RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 EIF5P55010 431 aaKnown RBP12.82□□□□□ -0.36
VRK3-215ENST00000599138 NLGN2Q8NFZ4 835 aa12.82□□□□□ -0.36
VRK3-215ENST00000599138 KDM3BQ7LBC6 1761 aa12.81□□□□□ -0.36
VRK3-215ENST00000599138 GOLGB1Q14789 3259 aaKnown RBP12.81□□□□□ -0.36
VRK3-215ENST00000599138 MMP10P09238 476 aa12.81□□□□□ -0.36
VRK3-215ENST00000599138 RIPK4P57078 832 aa12.81□□□□□ -0.36
VRK3-215ENST00000599138 WDR43Q15061 677 aaKnown RBP eCLIP12.81□□□□□ -0.36
VRK3-215ENST00000599138 PNISRQ8TF01 805 aaKnown RBP12.81□□□□□ -0.36
VRK3-215ENST00000599138 RUNDC1Q96C34 613 aa12.81□□□□□ -0.36
VRK3-215ENST00000599138 THUMPD2Q9BTF0 503 aaKnown RBP12.81□□□□□ -0.36
VRK3-215ENST00000599138 SRP68Q9UHB9 627 aaKnown RBP12.81□□□□□ -0.36
VRK3-215ENST00000599138 COL15A1P39059 1388 aa12.81□□□□□ -0.36
VRK3-215ENST00000599138 SNRPA1P09661 255 aaKnown RBP12.8□□□□□ -0.36
VRK3-215ENST00000599138 CCDC146Q8IYE0 955 aa12.8□□□□□ -0.36
VRK3-215ENST00000599138 MIS18AQ9NYP9 233 aa12.8□□□□□ -0.36
VRK3-215ENST00000599138 NARFQ9UHQ1 456 aa12.8□□□□□ -0.36
VRK3-215ENST00000599138 USP16Q9Y5T5 823 aa12.8□□□□□ -0.36
VRK3-215ENST00000599138 KIF13BQ9NQT8 1826 aa12.79□□□□□ -0.36
VRK3-215ENST00000599138 PRAMEF22A3QJZ6 481 aa12.79□□□□□ -0.36
VRK3-215ENST00000599138 DCAF8L1A6NGE4 600 aa12.79□□□□□ -0.36
VRK3-215ENST00000599138 CANXP27824 592 aaKnown RBP12.79□□□□□ -0.36
VRK3-215ENST00000599138 FKBP8Q14318 412 aa12.79□□□□□ -0.36
VRK3-215ENST00000599138 KLHL34Q8N239 644 aa12.79□□□□□ -0.36
VRK3-215ENST00000599138 ZPR1O75312 459 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 A1BGP04217 495 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 TM4SF1P30408 202 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 IL6STP40189 918 aaPredicted RBP12.78□□□□□ -0.36
VRK3-215ENST00000599138 LMOD3Q0VAK6 560 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 CCDC184Q52MB2 194 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 USPL1Q5W0Q7 1092 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 BCL2L12Q9HB09 334 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 TRIM35Q9UPQ4 493 aa12.78□□□□□ -0.36
VRK3-215ENST00000599138 A0A087WZG4 1122 aa12.77□□□□□ -0.37
VRK3-215ENST00000599138 EIF4A1P60842 406 aaKnown RBP12.77□□□□□ -0.37
VRK3-215ENST00000599138 DDR1Q08345 913 aa12.77□□□□□ -0.37
VRK3-215ENST00000599138 BABAM1Q9NWV8 329 aa12.77□□□□□ -0.37
VRK3-215ENST00000599138 RRP7AQ9Y3A4 280 aaKnown RBP12.77□□□□□ -0.37
VRK3-215ENST00000599138 C10orf71Q711Q0 1435 aa12.77□□□□□ -0.37
VRK3-215ENST00000599138 GIGYF1O75420 1035 aaPredicted RBP12.76□□□□□ -0.37
VRK3-215ENST00000599138 PARP3Q9Y6F1 533 aa12.76□□□□□ -0.37
VRK3-215ENST00000599138 KIAA1551Q9HCM1 1747 aa12.76□□□□□ -0.37
VRK3-215ENST00000599138 LAMB4A4D0S4 1761 aa12.75□□□□□ -0.37
VRK3-215ENST00000599138 NBPF26B4DH59 902 aa12.75□□□□□ -0.37
VRK3-215ENST00000599138 POLRMTO00411 1230 aaKnown RBP12.75□□□□□ -0.37
VRK3-215ENST00000599138 ANP32CO43423 234 aa12.75□□□□□ -0.37
VRK3-215ENST00000599138 CHD4Q14839 1912 aa12.75□□□□□ -0.37
VRK3-215ENST00000599138 NBPF10Q6P3W6 841 aaKnown RBP12.75□□□□□ -0.37
VRK3-215ENST00000599138 NBPF15Q8N660 670 aa12.75□□□□□ -0.37
VRK3-215ENST00000599138 SCN7AQ01118 1682 aa12.74□□□□□ -0.37
VRK3-215ENST00000599138 YBX3P16989 372 aaKnown RBP eCLIP12.74□□□□□ -0.375e-7■■□□□ 11.5
VRK3-215ENST00000599138 NFIXQ14938 502 aa12.74□□□□□ -0.37
VRK3-215ENST00000599138 NEUROD2Q15784 382 aa12.74□□□□□ -0.37
VRK3-215ENST00000599138 GPR162Q16538 588 aa12.74□□□□□ -0.37
VRK3-215ENST00000599138 AFDNP55196 1824 aaKnown RBP12.74□□□□□ -0.37
VRK3-215ENST00000599138 NRXN2Q9P2S2 1712 aa12.74□□□□□ -0.37
VRK3-215ENST00000599138 PXDNLA1KZ92 1463 aa12.73□□□□□ -0.37
VRK3-215ENST00000599138 CHL1O00533 1208 aa12.73□□□□□ -0.37
VRK3-215ENST00000599138 APAF1O14727 1248 aa12.73□□□□□ -0.37
VRK3-215ENST00000599138 CAMTA2O94983 1202 aa12.73□□□□□ -0.37
VRK3-215ENST00000599138 PIP4K2AP48426 406 aaPredicted RBP12.73□□□□□ -0.37
VRK3-215ENST00000599138 TGFB2P61812 414 aa12.73□□□□□ -0.37
VRK3-215ENST00000599138 TSPYL4Q9UJ04 414 aa12.73□□□□□ -0.37
VRK3-215ENST00000599138 TBC1D2BQ9UPU7 963 aa12.73□□□□□ -0.37
VRK3-215ENST00000599138 BCORQ6W2J9 1755 aa12.72□□□□□ -0.37
VRK3-215ENST00000599138 RGL2O15211 777 aa12.72□□□□□ -0.37
VRK3-215ENST00000599138 N4BP2Q86UW6 1770 aaPredicted RBP12.71□□□□□ -0.37
VRK3-215ENST00000599138 GRIN3BO60391 1043 aa12.71□□□□□ -0.37
VRK3-215ENST00000599138 DZIP3Q86Y13 1208 aaKnown RBP12.71□□□□□ -0.37
VRK3-215ENST00000599138 ZNF330Q9Y3S2 320 aaPredicted RBP12.71□□□□□ -0.37
VRK3-215ENST00000599138 BRCA1P38398 1863 aaKnown RBP12.71□□□□□ -0.37
VRK3-215ENST00000599138 ERBB4Q15303 1308 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 SERPINB2P05120 415 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 ZNF853P0CG23 659 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 KCNA3P22001 575 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 YY1P25490 414 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 TBC1D9BQ66K14 1250 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 CLEC4GQ6UXB4 293 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 NPM2Q86SE8 214 aaKnown RBP12.7□□□□□ -0.38
VRK3-215ENST00000599138 PELP1Q8IZL8 1130 aaKnown RBP12.7□□□□□ -0.38
VRK3-215ENST00000599138 CFAP44Q96MT7 982 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 MRS2Q9HD23 443 aa12.7□□□□□ -0.38
VRK3-215ENST00000599138 A0A0G2JLW4 131 aa12.69□□□□□ -0.38
VRK3-215ENST00000599138 DPEP1P16444 411 aa12.69□□□□□ -0.38
VRK3-215ENST00000599138 PDIA6Q15084 440 aa12.68□□□□□ -0.38
VRK3-215ENST00000599138 NCBP3Q53F19 620 aaKnown RBP12.68□□□□□ -0.38
VRK3-215ENST00000599138 LRP10Q7Z4F1 713 aa12.68□□□□□ -0.38
VRK3-215ENST00000599138 CARMIL3Q8ND23 1372 aa12.68□□□□□ -0.38
VRK3-215ENST00000599138 CCDC27Q2M243 656 aa12.67□□□□□ -0.38
VRK3-215ENST00000599138 BICDL1Q6ZP65 573 aa12.67□□□□□ -0.38
VRK3-215ENST00000599138 SETDB2Q96T68 719 aa12.67□□□□□ -0.38
VRK3-215ENST00000599138 IFT57Q9NWB7 429 aa12.67□□□□□ -0.38
VRK3-215ENST00000599138 ANKRD31Q8N7Z5 1873 aa12.66□□□□□ -0.38
VRK3-215ENST00000599138 ERVV-1B6SEH8 477 aa12.66□□□□□ -0.38
VRK3-215ENST00000599138 HOXB7P09629 217 aa12.66□□□□□ -0.38
VRK3-215ENST00000599138 CALD1Q05682 793 aaKnown RBP12.66□□□□□ -0.38
VRK3-215ENST00000599138 KRT24Q2M2I5 525 aa12.66□□□□□ -0.38
VRK3-215ENST00000599138 PRR5LQ6MZQ0 368 aa12.66□□□□□ -0.38
VRK3-215ENST00000599138 MBIPQ9NS73 344 aa12.66□□□□□ -0.38
VRK3-215ENST00000599138 ZNF652Q9Y2D9 606 aa12.66□□□□□ -0.38
VRK3-215ENST00000599138 LAS1LQ9Y4W2 734 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms