RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 NGEFQ8N5V2 710 aa23.79■■□□□ 1.4
LIG1-216ENST00000598938 KCNQ3O43525 872 aa23.78■■□□□ 1.4
LIG1-216ENST00000598938 GPBP1L1Q9HC44 474 aaPredicted RBP23.78■■□□□ 1.4
LIG1-216ENST00000598938 BABAM1Q9NWV8 329 aa23.78■■□□□ 1.4
LIG1-216ENST00000598938 MIS18AQ9NYP9 233 aa23.78■■□□□ 1.4
LIG1-216ENST00000598938 ATP6V1AP38606 617 aa23.77■■□□□ 1.4
LIG1-216ENST00000598938 ITPK1Q13572 414 aa23.77■■□□□ 1.4
LIG1-216ENST00000598938 WWC1Q8IX03 1113 aa23.77■■□□□ 1.4
LIG1-216ENST00000598938 TJP1Q07157 1748 aa23.76■■□□□ 1.39
LIG1-216ENST00000598938 CALD1Q05682 793 aaKnown RBP23.76■■□□□ 1.39
LIG1-216ENST00000598938 ZNF496Q96IT1 587 aaPredicted RBP23.76■■□□□ 1.39
LIG1-216ENST00000598938 VSIG10Q8N0Z9 540 aa23.75■■□□□ 1.39
LIG1-216ENST00000598938 AK7Q96M32 723 aa23.75■■□□□ 1.39
LIG1-216ENST00000598938 HEG1Q9ULI3 1381 aa23.75■■□□□ 1.39
LIG1-216ENST00000598938 COL5A3P25940 1745 aaPredicted RBP23.74■■□□□ 1.39
LIG1-216ENST00000598938 CHL1O00533 1208 aa23.74■■□□□ 1.39
LIG1-216ENST00000598938 LINC00116Q8NCU8 138 aa23.74■■□□□ 1.39
LIG1-216ENST00000598938 FMNL2Q96PY5 1086 aa23.74■■□□□ 1.39
LIG1-216ENST00000598938 TSPYL4Q9UJ04 414 aa23.74■■□□□ 1.39
LIG1-216ENST00000598938 SALL2Q9Y467 1007 aaPredicted RBP23.74■■□□□ 1.39
LIG1-216ENST00000598938 ZNF853P0CG23 659 aa23.73■■□□□ 1.39
LIG1-216ENST00000598938 CFAP44Q96MT7 982 aa23.73■■□□□ 1.39
LIG1-216ENST00000598938 SSFA2P28290 1259 aa23.72■■□□□ 1.39
LIG1-216ENST00000598938 IFT57Q9NWB7 429 aa23.72■■□□□ 1.39
LIG1-216ENST00000598938 KIF13BQ9NQT8 1826 aa23.71■■□□□ 1.39
LIG1-216ENST00000598938 IL16Q14005 1332 aa23.71■■□□□ 1.39
LIG1-216ENST00000598938 ZNF521Q96K83 1311 aa23.7■■□□□ 1.38
LIG1-216ENST00000598938 HSPA6P17066 643 aa23.7■■□□□ 1.38
LIG1-216ENST00000598938 EIF4A1P60842 406 aaKnown RBP23.7■■□□□ 1.38
LIG1-216ENST00000598938 GNAI1P63096 354 aa23.7■■□□□ 1.38
LIG1-216ENST00000598938 WDR63Q8IWG1 891 aa23.7■■□□□ 1.38
LIG1-216ENST00000598938 DNAJC10Q8IXB1 793 aa23.7■■□□□ 1.38
LIG1-216ENST00000598938 LAS1LQ9Y4W2 734 aaKnown RBP23.7■■□□□ 1.38
LIG1-216ENST00000598938 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.68■■□□□ 1.38
LIG1-216ENST00000598938 CNTNAP4Q9C0A0 1308 aa23.67■■□□□ 1.38
LIG1-216ENST00000598938 CYP19A1P11511 503 aaPredicted RBP23.67■■□□□ 1.38
LIG1-216ENST00000598938 RC3H1Q5TC82 1133 aaKnown RBP23.67■■□□□ 1.38
LIG1-216ENST00000598938 TEX13AQ9BXU3 409 aaPredicted RBP23.67■■□□□ 1.38
LIG1-216ENST00000598938 MBIPQ9NS73 344 aa23.67■■□□□ 1.38
LIG1-216ENST00000598938 SNRPA1P09661 255 aaKnown RBP23.66■■□□□ 1.38
LIG1-216ENST00000598938 CRKLP46109 303 aaKnown RBP23.65■■□□□ 1.38
LIG1-216ENST00000598938 AMIGO3Q86WK7 504 aa23.65■■□□□ 1.38
LIG1-216ENST00000598938 KIAA1551Q9HCM1 1747 aa23.64■■□□□ 1.38
LIG1-216ENST00000598938 PRAMEF22A3QJZ6 481 aa23.64■■□□□ 1.37
LIG1-216ENST00000598938 PHF14O94880 888 aa23.64■■□□□ 1.37
LIG1-216ENST00000598938 LAMB4A4D0S4 1761 aa23.63■■□□□ 1.37
LIG1-216ENST00000598938 STARD3NLO95772 234 aa23.63■■□□□ 1.37
LIG1-216ENST00000598938 INTS5Q6P9B9 1019 aaKnown RBP23.63■■□□□ 1.37
LIG1-216ENST00000598938 MYH14Q7Z406 1995 aaKnown RBP23.63■■□□□ 1.37
LIG1-216ENST00000598938 CCDC87Q9NVE4 849 aa23.62■■□□□ 1.37
LIG1-216ENST00000598938 USP16Q9Y5T5 823 aa23.62■■□□□ 1.37
LIG1-216ENST00000598938 GNPATO15228 680 aa23.61■■□□□ 1.37
LIG1-216ENST00000598938 ZNF526Q8TF50 670 aaPredicted RBP23.61■■□□□ 1.37
LIG1-216ENST00000598938 SPINK5Q9NQ38 1064 aaPredicted RBP23.61■■□□□ 1.37
LIG1-216ENST00000598938 KRT24Q2M2I5 525 aa23.6■■□□□ 1.37
LIG1-216ENST00000598938 TSR2Q969E8 191 aaKnown RBP23.6■■□□□ 1.37
LIG1-216ENST00000598938 RPS6KA4O75676 772 aa23.59■■□□□ 1.37
LIG1-216ENST00000598938 PXDNLA1KZ92 1463 aa23.59■■□□□ 1.37
LIG1-216ENST00000598938 FANCIQ9NVI1 1328 aa23.59■■□□□ 1.37
LIG1-216ENST00000598938 KIF3CO14782 793 aa23.58■■□□□ 1.37
LIG1-216ENST00000598938 HNRNPUQ00839 825 aaKnown RBP eCLIP23.58■■□□□ 1.37
LIG1-216ENST00000598938 ZBTB1Q9Y2K1 713 aa23.58■■□□□ 1.37
LIG1-216ENST00000598938 RTCBQ9Y3I0 505 aaKnown RBP23.58■■□□□ 1.37
LIG1-216ENST00000598938 BRCA1P38398 1863 aaKnown RBP23.58■■□□□ 1.36
LIG1-216ENST00000598938 N4BP2Q86UW6 1770 aaPredicted RBP23.57■■□□□ 1.36
LIG1-216ENST00000598938 HOXB7P09629 217 aa23.57■■□□□ 1.36
LIG1-216ENST00000598938 GOLGA2Q08379 1002 aa23.57■■□□□ 1.36
LIG1-216ENST00000598938 A1BGP04217 495 aa23.56■■□□□ 1.36
LIG1-216ENST00000598938 SMIM5Q71RC9 77 aa23.56■■□□□ 1.36
LIG1-216ENST00000598938 MYH16Q9H6N6 1097 aa23.56■■□□□ 1.36
LIG1-216ENST00000598938 SOS1Q07889 1333 aaPredicted RBP23.56■■□□□ 1.36
LIG1-216ENST00000598938 ADRA2BP18089 450 aa23.55■■□□□ 1.36
LIG1-216ENST00000598938 TGFB2P61812 414 aa23.55■■□□□ 1.36
LIG1-216ENST00000598938 C10orf71Q711Q0 1435 aa23.55■■□□□ 1.36
LIG1-216ENST00000598938 C4AP0C0L4 1744 aa23.55■■□□□ 1.36
LIG1-216ENST00000598938 MMP10P09238 476 aa23.54■■□□□ 1.36
LIG1-216ENST00000598938 DUSP27Q5VZP5 1158 aa23.54■■□□□ 1.36
LIG1-216ENST00000598938 C8orf58Q8NAV2 365 aa23.54■■□□□ 1.36
LIG1-216ENST00000598938 ARFGEF1Q9Y6D6 1849 aa23.54■■□□□ 1.36
LIG1-216ENST00000598938 E9PSI1 815 aa23.53■■□□□ 1.36
LIG1-216ENST00000598938 CANXP27824 592 aaKnown RBP23.53■■□□□ 1.36
LIG1-216ENST00000598938 IL6STP40189 918 aaPredicted RBP23.53■■□□□ 1.36
LIG1-216ENST00000598938 EIF5P55010 431 aaKnown RBP23.53■■□□□ 1.36
LIG1-216ENST00000598938 NLGN1Q8N2Q7 840 aa23.53■■□□□ 1.36
LIG1-216ENST00000598938 NBPF26B4DH59 902 aa23.52■■□□□ 1.36
LIG1-216ENST00000598938 APLP1P51693 650 aa23.52■■□□□ 1.36
LIG1-216ENST00000598938 SLFN5Q08AF3 891 aa23.52■■□□□ 1.36
LIG1-216ENST00000598938 TRAPPC3LQ5T215 181 aa23.52■■□□□ 1.36
LIG1-216ENST00000598938 NBPF10Q6P3W6 841 aaKnown RBP23.52■■□□□ 1.36
LIG1-216ENST00000598938 NBPF15Q8N660 670 aa23.52■■□□□ 1.36
LIG1-216ENST00000598938 ERBB4Q15303 1308 aa23.52■■□□□ 1.36
LIG1-216ENST00000598938 COL15A1P39059 1388 aa23.52■■□□□ 1.36
LIG1-216ENST00000598938 ARHGEF1Q92888 912 aaKnown RBP23.51■■□□□ 1.35
LIG1-216ENST00000598938 WWC3Q9ULE0 1092 aa23.51■■□□□ 1.35
LIG1-216ENST00000598938 TOMM70O94826 608 aa23.5■■□□□ 1.35
LIG1-216ENST00000598938 EIF2S2P20042 333 aaKnown RBP23.5■■□□□ 1.35
LIG1-216ENST00000598938 PIP4K2AP48426 406 aaPredicted RBP23.5■■□□□ 1.35
LIG1-216ENST00000598938 TRMT2AQ8IZ69 625 aaKnown RBP23.5■■□□□ 1.35
LIG1-216ENST00000598938 TSPYL6Q8N831 410 aa23.5■■□□□ 1.35
LIG1-216ENST00000598938 CDCA7LQ96GN5 454 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms