RNA–Protein interactions for RNA: ENST00000596365.5

LINC00649-208, long intergenic non-protein coding RNA 649, human

TSL 5

Gene LINC00649, Length 682 nt, Biotype antisense RNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00649-208	ENST00000596365	ZC3H4	Q9UPT8	1303 aa	Known RBP	12.02	□□□□□ -0.49
LINC00649-208	ENST00000596365	CHRM1	P11229	460 aa	Predicted RBP	12.01	□□□□□ -0.49
LINC00649-208	ENST00000596365	VEGFA	P15692	232 aa	Predicted RBP	12.01	□□□□□ -0.49
LINC00649-208	ENST00000596365	FBLN1	P23142	703 aa		12.01	□□□□□ -0.49
LINC00649-208	ENST00000596365	ATP6V1A	P38606	617 aa		12.01	□□□□□ -0.49
LINC00649-208	ENST00000596365	ITPK1	Q13572	414 aa		12.01	□□□□□ -0.49
LINC00649-208	ENST00000596365	RTCB	Q9Y3I0	505 aa	Known RBP	12.01	□□□□□ -0.49
LINC00649-208	ENST00000596365	CCDC88A	Q3V6T2	1871 aa		12.01	□□□□□ -0.49
LINC00649-208	ENST00000596365	ATMIN	O43313	823 aa	Predicted RBP	12	□□□□□ -0.49
LINC00649-208	ENST00000596365	ASTL	Q6HA08	431 aa	Predicted RBP	12	□□□□□ -0.49
LINC00649-208	ENST00000596365	ZNF831	Q5JPB2	1677 aa		12	□□□□□ -0.49
LINC00649-208	ENST00000596365	NKX1-1	Q15270	411 aa	Predicted RBP	11.99	□□□□□ -0.49
LINC00649-208	ENST00000596365	PUS7	Q96PZ0	661 aa	Known RBP	11.99	□□□□□ -0.49
LINC00649-208	ENST00000596365	PRDM10	Q9NQV6	1147 aa		11.99	□□□□□ -0.49
LINC00649-208	ENST00000596365	TMOD3	Q9NYL9	352 aa		11.99	□□□□□ -0.49
LINC00649-208	ENST00000596365	COL5A3	P25940	1745 aa	Predicted RBP	11.98	□□□□□ -0.49
LINC00649-208	ENST00000596365	TIAM2	Q8IVF5	1701 aa		11.98	□□□□□ -0.49
LINC00649-208	ENST00000596365	GYS1	P13807	737 aa		11.98	□□□□□ -0.49
LINC00649-208	ENST00000596365	RRS1	Q15050	365 aa	Known RBP	11.98	□□□□□ -0.49
LINC00649-208	ENST00000596365	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.98	□□□□□ -0.49
LINC00649-208	ENST00000596365	ASAP1	Q9ULH1	1129 aa		11.98	□□□□□ -0.49
LINC00649-208	ENST00000596365	INSR	P06213	1382 aa		11.97	□□□□□ -0.49
LINC00649-208	ENST00000596365	GLTPD2	A6NH11	291 aa		11.97	□□□□□ -0.49
LINC00649-208	ENST00000596365	RFC4	P35249	363 aa		11.97	□□□□□ -0.49
LINC00649-208	ENST00000596365	TIE1	P35590	1138 aa		11.97	□□□□□ -0.49
LINC00649-208	ENST00000596365	ARHGEF1	Q92888	912 aa	Known RBP	11.97	□□□□□ -0.49
LINC00649-208	ENST00000596365	PCDHB8	Q9UN66	801 aa		11.97	□□□□□ -0.49
LINC00649-208	ENST00000596365	SPG7	Q9UQ90	795 aa		11.97	□□□□□ -0.49
LINC00649-208	ENST00000596365	KDM6A	O15550	1401 aa	Predicted RBP	11.96	□□□□□ -0.49
LINC00649-208	ENST00000596365	FOXN1	O15353	648 aa		11.96	□□□□□ -0.49
LINC00649-208	ENST00000596365	RC3H1	Q5TC82	1133 aa	Known RBP	11.96	□□□□□ -0.49
LINC00649-208	ENST00000596365	MYH14	Q7Z406	1995 aa	Known RBP	11.96	□□□□□ -0.5
LINC00649-208	ENST00000596365	LMNB1	P20700	586 aa		11.95	□□□□□ -0.5
LINC00649-208	ENST00000596365	ATN1	P54259	1190 aa	Predicted RBP	11.95	□□□□□ -0.5
LINC00649-208	ENST00000596365	FAM161A	Q3B820	660 aa		11.95	□□□□□ -0.5
LINC00649-208	ENST00000596365	HSP90AB2P	Q58FF8	381 aa		11.95	□□□□□ -0.5
LINC00649-208	ENST00000596365	AIDA	Q96BJ3	306 aa		11.95	□□□□□ -0.5
LINC00649-208	ENST00000596365	ATG3	Q9NT62	314 aa		11.95	□□□□□ -0.5
LINC00649-208	ENST00000596365	MKRN1	Q9UHC7	482 aa	Known RBP	11.95	□□□□□ -0.5
LINC00649-208	ENST00000596365	FLT4	P35916	1363 aa		11.94	□□□□□ -0.5
LINC00649-208	ENST00000596365	KDR	P35968	1356 aa		11.94	□□□□□ -0.5
LINC00649-208	ENST00000596365	KIF24	Q5T7B8	1368 aa		11.94	□□□□□ -0.5
LINC00649-208	ENST00000596365	RPS6KA4	O75676	772 aa		11.94	□□□□□ -0.5
LINC00649-208	ENST00000596365	CTCF	P49711	727 aa	Predicted RBP	11.94	□□□□□ -0.5
LINC00649-208	ENST00000596365	RASSF7	Q02833	373 aa		11.94	□□□□□ -0.5
LINC00649-208	ENST00000596365	CNTNAP4	Q9C0A0	1308 aa		11.93	□□□□□ -0.5
LINC00649-208	ENST00000596365	DLEC1	Q9Y238	1755 aa		11.93	□□□□□ -0.5
LINC00649-208	ENST00000596365	TTLL13P	A6NNM8	815 aa		11.93	□□□□□ -0.5
LINC00649-208	ENST00000596365	CHRNA5	P30532	468 aa		11.93	□□□□□ -0.5
LINC00649-208	ENST00000596365	DICER1	Q9UPY3	1922 aa	Known RBP	11.93	□□□□□ -0.5
LINC00649-208	ENST00000596365	VIRMA	Q69YN4	1812 aa	Known RBP	11.93	□□□□□ -0.5
LINC00649-208	ENST00000596365	KIF20B	Q96Q89	1820 aa		11.93	□□□□□ -0.5
LINC00649-208	ENST00000596365	CARD11	Q9BXL7	1154 aa		11.92	□□□□□ -0.5
LINC00649-208	ENST00000596365	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.92	□□□□□ -0.5
LINC00649-208	ENST00000596365	NCAPD2	Q15021	1401 aa		11.92	□□□□□ -0.5
LINC00649-208	ENST00000596365	CNTNAP1	P78357	1384 aa		11.92	□□□□□ -0.5
LINC00649-208	ENST00000596365	DPY19L2	Q6NUT2	758 aa		11.91	□□□□□ -0.5
LINC00649-208	ENST00000596365	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.91	□□□□□ -0.5
LINC00649-208	ENST00000596365	IFNL2	Q8IZJ0	200 aa		11.91	□□□□□ -0.5
LINC00649-208	ENST00000596365	GGNBP2	Q9H3C7	697 aa		11.91	□□□□□ -0.5
LINC00649-208	ENST00000596365	AFDN	P55196	1824 aa	Known RBP	11.9	□□□□□ -0.5
LINC00649-208	ENST00000596365	FYB1	O15117	783 aa		11.9	□□□□□ -0.5
LINC00649-208	ENST00000596365	PHKG2	P15735	406 aa		11.9	□□□□□ -0.5
LINC00649-208	ENST00000596365	MLLT1	Q03111	559 aa	Predicted RBP	11.9	□□□□□ -0.5
LINC00649-208	ENST00000596365	DDR1	Q08345	913 aa		11.9	□□□□□ -0.5
LINC00649-208	ENST00000596365	ABHD8	Q96I13	439 aa		11.9	□□□□□ -0.5
LINC00649-208	ENST00000596365	SLC4A9	Q96Q91	983 aa		11.9	□□□□□ -0.5
LINC00649-208	ENST00000596365	POTEC	B2RU33	542 aa		11.89	□□□□□ -0.51
LINC00649-208	ENST00000596365	TMEM106C	Q9BVX2	250 aa		11.89	□□□□□ -0.51
LINC00649-208	ENST00000596365	TONSL	Q96HA7	1378 aa		11.89	□□□□□ -0.51
LINC00649-208	ENST00000596365	USP42	Q9H9J4	1324 aa	Known RBP	11.88	□□□□□ -0.51
LINC00649-208	ENST00000596365	POLRMT	O00411	1230 aa	Known RBP	11.88	□□□□□ -0.51
LINC00649-208	ENST00000596365	LBX1	P52954	281 aa		11.88	□□□□□ -0.51
LINC00649-208	ENST00000596365	SRP68	Q9UHB9	627 aa	Known RBP	11.88	□□□□□ -0.51
LINC00649-208	ENST00000596365	ANKRD26	Q9UPS8	1709 aa		11.87	□□□□□ -0.51
LINC00649-208	ENST00000596365	ERVV-2	B6SEH9	535 aa		11.87	□□□□□ -0.51
LINC00649-208	ENST00000596365	TM4SF1	P30408	202 aa		11.87	□□□□□ -0.51
LINC00649-208	ENST00000596365	LHX8	Q68G74	356 aa		11.87	□□□□□ -0.51
LINC00649-208	ENST00000596365	SLC39A7	Q92504	469 aa		11.87	□□□□□ -0.51
LINC00649-208	ENST00000596365	SIN3A	Q96ST3	1273 aa		11.87	□□□□□ -0.51
LINC00649-208	ENST00000596365	WBP1L	Q9NX94	342 aa		11.87	□□□□□ -0.51
LINC00649-208	ENST00000596365	NRXN2	Q9P2S2	1712 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	SLC24A1	O60721	1099 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	C7	P10643	843 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	VEGFB	P49765	207 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	RGS19	P49795	217 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	NEUROD1	Q13562	356 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	TTLL6	Q8N841	843 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	FER1L6	Q2WGJ9	1857 aa		11.86	□□□□□ -0.51
LINC00649-208	ENST00000596365	ADAMTS7	Q9UKP4	1686 aa		11.85	□□□□□ -0.51
LINC00649-208	ENST00000596365	CRKL	P46109	303 aa	Known RBP	11.85	□□□□□ -0.51
LINC00649-208	ENST00000596365	METRN	Q9UJH8	293 aa		11.85	□□□□□ -0.51
LINC00649-208	ENST00000596365	TRIM35	Q9UPQ4	493 aa		11.85	□□□□□ -0.51
LINC00649-208	ENST00000596365	SCN4A	P35499	1836 aa		11.85	□□□□□ -0.51
LINC00649-208	ENST00000596365	TJP1	Q07157	1748 aa		11.85	□□□□□ -0.51
LINC00649-208	ENST00000596365	PASK	Q96RG2	1323 aa		11.85	□□□□□ -0.51
LINC00649-208	ENST00000596365	TNRC18	O15417	2968 aa	Predicted RBP	11.84	□□□□□ -0.51
LINC00649-208	ENST00000596365	NFKBIE	O00221	500 aa		11.84	□□□□□ -0.51
LINC00649-208	ENST00000596365	ZPR1	O75312	459 aa		11.84	□□□□□ -0.51
LINC00649-208	ENST00000596365	HSP90AB1	P08238	724 aa	Known RBP	11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms