RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 TAF7Q15545 349 aaPredicted RBP20.74■□□□□ 0.91
LIG3-215ENST00000592690 RUNDC1Q96C34 613 aa20.74■□□□□ 0.91
LIG3-215ENST00000592690 MIS18AQ9NYP9 233 aa20.74■□□□□ 0.91
LIG3-215ENST00000592690 RRP7AQ9Y3A4 280 aaKnown RBP20.74■□□□□ 0.91
LIG3-215ENST00000592690 COL15A1P39059 1388 aa20.72■□□□□ 0.91
LIG3-215ENST00000592690 SRP68Q9UHB9 627 aaKnown RBP20.72■□□□□ 0.91
LIG3-215ENST00000592690 KIF13BQ9NQT8 1826 aa20.71■□□□□ 0.91
LIG3-215ENST00000592690 SCN7AQ01118 1682 aa20.71■□□□□ 0.91
LIG3-215ENST00000592690 PRAMEF22A3QJZ6 481 aa20.71■□□□□ 0.91
LIG3-215ENST00000592690 ANP32CO43423 234 aa20.71■□□□□ 0.91
LIG3-215ENST00000592690 STARD3NLO95772 234 aa20.71■□□□□ 0.91
LIG3-215ENST00000592690 GYS1P13807 737 aa20.71■□□□□ 0.91
LIG3-215ENST00000592690 NEUROD2Q15784 382 aa20.71■□□□□ 0.91
LIG3-215ENST00000592690 USP42Q9H9J4 1324 aaKnown RBP20.71■□□□□ 0.91
LIG3-215ENST00000592690 CANXP27824 592 aaKnown RBP20.7■□□□□ 0.9
LIG3-215ENST00000592690 TEX13AQ9BXU3 409 aaPredicted RBP20.7■□□□□ 0.9
LIG3-215ENST00000592690 MMP10P09238 476 aa20.69■□□□□ 0.9
LIG3-215ENST00000592690 NLGN2Q8NFZ4 835 aa20.69■□□□□ 0.9
LIG3-215ENST00000592690 BCORQ6W2J9 1755 aa20.69■□□□□ 0.9
LIG3-215ENST00000592690 KIAA1551Q9HCM1 1747 aa20.68■□□□□ 0.9
LIG3-215ENST00000592690 USP16Q9Y5T5 823 aa20.68■□□□□ 0.9
LIG3-215ENST00000592690 AFDNP55196 1824 aaKnown RBP20.68■□□□□ 0.9
LIG3-215ENST00000592690 SNRPA1P09661 255 aaKnown RBP20.67■□□□□ 0.9
LIG3-215ENST00000592690 LMOD3Q0VAK6 560 aa20.67■□□□□ 0.9
LIG3-215ENST00000592690 NLGN1Q8N2Q7 840 aa20.67■□□□□ 0.9
LIG3-215ENST00000592690 PNISRQ8TF01 805 aaKnown RBP20.67■□□□□ 0.9
LIG3-215ENST00000592690 TRIM35Q9UPQ4 493 aa20.67■□□□□ 0.9
LIG3-215ENST00000592690 A1BGP04217 495 aa20.66■□□□□ 0.9
LIG3-215ENST00000592690 EIF5P55010 431 aaKnown RBP20.66■□□□□ 0.9
LIG3-215ENST00000592690 FKBP8Q14318 412 aa20.66■□□□□ 0.9
LIG3-215ENST00000592690 N4BP2Q86UW6 1770 aaPredicted RBP20.66■□□□□ 0.9
LIG3-215ENST00000592690 USPL1Q5W0Q7 1092 aa20.65■□□□□ 0.9
LIG3-215ENST00000592690 MRS2Q9HD23 443 aa20.65■□□□□ 0.9
LIG3-215ENST00000592690 NARFQ9UHQ1 456 aa20.65■□□□□ 0.9
LIG3-215ENST00000592690 ZPR1O75312 459 aa20.64■□□□□ 0.89
LIG3-215ENST00000592690 PIP4K2AP48426 406 aaPredicted RBP20.64■□□□□ 0.89
LIG3-215ENST00000592690 EIF4A1P60842 406 aaKnown RBP20.64■□□□□ 0.89
LIG3-215ENST00000592690 ZNF330Q9Y3S2 320 aaPredicted RBP20.64■□□□□ 0.89
LIG3-215ENST00000592690 CD2APQ9Y5K6 639 aa20.64■□□□□ 0.89
LIG3-215ENST00000592690 APAF1O14727 1248 aa20.63■□□□□ 0.89
LIG3-215ENST00000592690 IL6STP40189 918 aaPredicted RBP20.63■□□□□ 0.89
LIG3-215ENST00000592690 TSPYL4Q9UJ04 414 aa20.63■□□□□ 0.89
LIG3-215ENST00000592690 CHD4Q14839 1912 aa20.63■□□□□ 0.89
LIG3-215ENST00000592690 NRXN2Q9P2S2 1712 aa20.62■□□□□ 0.89
LIG3-215ENST00000592690 DDR1Q08345 913 aa20.62■□□□□ 0.89
LIG3-215ENST00000592690 BCL2L12Q9HB09 334 aa20.62■□□□□ 0.89
LIG3-215ENST00000592690 C10orf71Q711Q0 1435 aa20.61■□□□□ 0.89
LIG3-215ENST00000592690 BRCA1P38398 1863 aaKnown RBP20.61■□□□□ 0.89
LIG3-215ENST00000592690 GIGYF1O75420 1035 aaPredicted RBP20.61■□□□□ 0.89
LIG3-215ENST00000592690 A0A087WZG4 1122 aa20.6■□□□□ 0.89
LIG3-215ENST00000592690 DCAF8L1A6NGE4 600 aa20.6■□□□□ 0.89
LIG3-215ENST00000592690 TBC1D2BQ9UPU7 963 aa20.6■□□□□ 0.89
LIG3-215ENST00000592690 PARP3Q9Y6F1 533 aa20.6■□□□□ 0.89
LIG3-215ENST00000592690 NBPF26B4DH59 902 aa20.59■□□□□ 0.89
LIG3-215ENST00000592690 NBPF10Q6P3W6 841 aaKnown RBP20.59■□□□□ 0.89
LIG3-215ENST00000592690 NBPF15Q8N660 670 aa20.59■□□□□ 0.89
LIG3-215ENST00000592690 TM4SF1P30408 202 aa20.58■□□□□ 0.89
LIG3-215ENST00000592690 BABAM1Q9NWV8 329 aa20.58■□□□□ 0.89
LIG3-215ENST00000592690 NUP98P52948 1817 aa20.57■□□□□ 0.88
LIG3-215ENST00000592690 PXDNLA1KZ92 1463 aa20.57■□□□□ 0.88
LIG3-215ENST00000592690 SENP3-EIF4A1A0A087X0R7 540 aa20.57■□□□□ 0.88
LIG3-215ENST00000592690 POLRMTO00411 1230 aaKnown RBP20.57■□□□□ 0.88
LIG3-215ENST00000592690 NFIXQ14938 502 aa20.57■□□□□ 0.88
LIG3-215ENST00000592690 PELP1Q8IZL8 1130 aaKnown RBP20.57■□□□□ 0.88
LIG3-215ENST00000592690 CHL1O00533 1208 aa20.56■□□□□ 0.88
LIG3-215ENST00000592690 LAS1LQ9Y4W2 734 aaKnown RBP20.56■□□□□ 0.88
LIG3-215ENST00000592690 ANKRD31Q8N7Z5 1873 aa20.56■□□□□ 0.88
LIG3-215ENST00000592690 CAMTA2O94983 1202 aa20.55■□□□□ 0.88
LIG3-215ENST00000592690 GPR162Q16538 588 aa20.55■□□□□ 0.88
LIG3-215ENST00000592690 NPM2Q86SE8 214 aaKnown RBP20.55■□□□□ 0.88
LIG3-215ENST00000592690 DZIP3Q86Y13 1208 aaKnown RBP20.55■□□□□ 0.88
LIG3-215ENST00000592690 GOLGB1Q14789 3259 aaKnown RBP20.54■□□□□ 0.88
LIG3-215ENST00000592690 YBX3P16989 372 aaKnown RBP eCLIP20.54■□□□□ 0.881e-6■■□□□ 11.7
LIG3-215ENST00000592690 BICDL1Q6ZP65 573 aa20.54■□□□□ 0.88
LIG3-215ENST00000592690 KRT24Q2M2I5 525 aa20.53■□□□□ 0.88
LIG3-215ENST00000592690 TBC1D9BQ66K14 1250 aa20.53■□□□□ 0.88
LIG3-215ENST00000592690 WWC3Q9ULE0 1092 aa20.53■□□□□ 0.88
LIG3-215ENST00000592690 DLEC1Q9Y238 1755 aa20.53■□□□□ 0.88
LIG3-215ENST00000592690 CFAP44Q96MT7 982 aa20.52■□□□□ 0.88
LIG3-215ENST00000592690 SERPINB2P05120 415 aa20.51■□□□□ 0.87
LIG3-215ENST00000592690 ARFGEF1Q9Y6D6 1849 aa20.5■□□□□ 0.87
LIG3-215ENST00000592690 ZNF853P0CG23 659 aa20.5■□□□□ 0.87
LIG3-215ENST00000592690 MYL6BP14649 208 aa20.5■□□□□ 0.87
LIG3-215ENST00000592690 EIF2S2P20042 333 aaKnown RBP20.5■□□□□ 0.87
LIG3-215ENST00000592690 NGEFQ8N5V2 710 aa20.5■□□□□ 0.87
LIG3-215ENST00000592690 MBIPQ9NS73 344 aa20.5■□□□□ 0.87
LIG3-215ENST00000592690 CARMIL3Q8ND23 1372 aa20.49■□□□□ 0.87
LIG3-215ENST00000592690 A0A0G2JLW4 131 aa20.49■□□□□ 0.87
LIG3-215ENST00000592690 DPEP1P16444 411 aa20.49■□□□□ 0.87
LIG3-215ENST00000592690 TGFB2P61812 414 aa20.49■□□□□ 0.87
LIG3-215ENST00000592690 UTRNP46939 3433 aa20.49■□□□□ 0.87
LIG3-215ENST00000592690 COL11A2P13942 1736 aaPredicted RBP20.49■□□□□ 0.87
LIG3-215ENST00000592690 ERBB4Q15303 1308 aa20.49■□□□□ 0.87
LIG3-215ENST00000592690 FAM9BQ8IZU0 186 aa20.48■□□□□ 0.87
LIG3-215ENST00000592690 NECTIN2Q92692 538 aa20.48■□□□□ 0.87
LIG3-215ENST00000592690 IFT57Q9NWB7 429 aa20.48■□□□□ 0.87
LIG3-215ENST00000592690 ANKRD36CQ5JPF3 1778 aa20.48■□□□□ 0.87
LIG3-215ENST00000592690 GNAI1P63096 354 aa20.47■□□□□ 0.87
LIG3-215ENST00000592690 CALD1Q05682 793 aaKnown RBP20.47■□□□□ 0.87
LIG3-215ENST00000592690 PDIA6Q15084 440 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms