RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RNMTO43148 476 aaKnown RBP14□□□□□ -0.17
LIG3-212ENST00000590181 MTHFSDQ2M296 383 aaKnown RBP14□□□□□ -0.17
LIG3-212ENST00000590181 C9orf131Q5VYM1 1079 aa14□□□□□ -0.17
LIG3-212ENST00000590181 CCDC88AQ3V6T2 1871 aa13.99□□□□□ -0.17
LIG3-212ENST00000590181 NRXN2Q9P2S2 1712 aa13.99□□□□□ -0.17
LIG3-212ENST00000590181 RFC4P35249 363 aa13.99□□□□□ -0.17
LIG3-212ENST00000590181 ARHGEF1Q92888 912 aaKnown RBP13.99□□□□□ -0.17
LIG3-212ENST00000590181 TEX13AQ9BXU3 409 aaPredicted RBP13.99□□□□□ -0.17
LIG3-212ENST00000590181 RPS6KA4O75676 772 aa13.98□□□□□ -0.17
LIG3-212ENST00000590181 HTRA3P83110 453 aa13.98□□□□□ -0.17
LIG3-212ENST00000590181 MRC1P22897 1456 aa13.98□□□□□ -0.17
LIG3-212ENST00000590181 KDM2BQ8NHM5 1336 aa13.97□□□□□ -0.17
LIG3-212ENST00000590181 U2AF1L5P0DN76 240 aaPredicted RBP13.97□□□□□ -0.17
LIG3-212ENST00000590181 U2AF1Q01081 240 aaKnown RBP eCLIP13.97□□□□□ -0.17
LIG3-212ENST00000590181 TEFQ10587 303 aa13.97□□□□□ -0.17
LIG3-212ENST00000590181 KLRG1Q96E93 195 aa13.97□□□□□ -0.17
LIG3-212ENST00000590181 RNF181Q9P0P0 153 aa13.97□□□□□ -0.17
LIG3-212ENST00000590181 TTC5Q8N0Z6 440 aa13.96□□□□□ -0.17
LIG3-212ENST00000590181 RTF1Q92541 710 aaKnown RBP13.96□□□□□ -0.17
LIG3-212ENST00000590181 RSPH6AQ9H0K4 717 aa13.96□□□□□ -0.17
LIG3-212ENST00000590181 USP42Q9H9J4 1324 aaKnown RBP13.95□□□□□ -0.18
LIG3-212ENST00000590181 SCN7AQ01118 1682 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 KCNA3P22001 575 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 PRKAR2BP31323 418 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 DDR1Q08345 913 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 FSTL1Q12841 308 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 DALRD3Q5D0E6 543 aaKnown RBP13.95□□□□□ -0.18
LIG3-212ENST00000590181 LGR6Q9HBX8 967 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 PIM2Q9P1W9 311 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 SRP68Q9UHB9 627 aaKnown RBP13.95□□□□□ -0.18
LIG3-212ENST00000590181 COL11A2P13942 1736 aaPredicted RBP13.95□□□□□ -0.18
LIG3-212ENST00000590181 CACNA1SQ13698 1873 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 CEMIPQ8WUJ3 1361 aa13.95□□□□□ -0.18
LIG3-212ENST00000590181 UBR2Q8IWV8 1755 aa13.94□□□□□ -0.18
LIG3-212ENST00000590181 PTCD1O75127 700 aaKnown RBP13.94□□□□□ -0.18
LIG3-212ENST00000590181 STARD3NLO95772 234 aa13.94□□□□□ -0.18
LIG3-212ENST00000590181 CRKLP46109 303 aaKnown RBP13.94□□□□□ -0.18
LIG3-212ENST00000590181 JMYQ8N9B5 988 aa13.94□□□□□ -0.18
LIG3-212ENST00000590181 CAPN15O75808 1086 aa13.93□□□□□ -0.18
LIG3-212ENST00000590181 CHRNA5P30532 468 aa13.93□□□□□ -0.18
LIG3-212ENST00000590181 CNGB1Q14028 1251 aaPredicted RBP13.93□□□□□ -0.18
LIG3-212ENST00000590181 FKBP8Q14318 412 aa13.93□□□□□ -0.18
LIG3-212ENST00000590181 COL13A1Q5TAT6 717 aaPredicted RBP13.93□□□□□ -0.18
LIG3-212ENST00000590181 DICER1Q9UPY3 1922 aaKnown RBP13.93□□□□□ -0.18
LIG3-212ENST00000590181 ANKRD31Q8N7Z5 1873 aa13.93□□□□□ -0.18
LIG3-212ENST00000590181 RASSF7Q02833 373 aa13.92□□□□□ -0.18
LIG3-212ENST00000590181 ZNF790Q6PG37 636 aa13.92□□□□□ -0.18
LIG3-212ENST00000590181 IL17REQ8NFR9 667 aa13.92□□□□□ -0.18
LIG3-212ENST00000590181 A0A087WZG4 1122 aa13.91□□□□□ -0.18
LIG3-212ENST00000590181 SMC1BQ8NDV3 1235 aa13.91□□□□□ -0.18
LIG3-212ENST00000590181 PNISRQ8TF01 805 aaKnown RBP13.91□□□□□ -0.18
LIG3-212ENST00000590181 FMNL2Q96PY5 1086 aa13.91□□□□□ -0.18
LIG3-212ENST00000590181 RRAGCQ9HB90 399 aa13.91□□□□□ -0.18
LIG3-212ENST00000590181 MYBBP1AQ9BQG0 1328 aaKnown RBP13.9□□□□□ -0.18
LIG3-212ENST00000590181 ZC3H4Q9UPT8 1303 aaKnown RBP13.9□□□□□ -0.18
LIG3-212ENST00000590181 POLRMTO00411 1230 aaKnown RBP13.9□□□□□ -0.18
LIG3-212ENST00000590181 CYP19A1P11511 503 aaPredicted RBP13.9□□□□□ -0.18
LIG3-212ENST00000590181 DDX10Q13206 875 aaKnown RBP13.9□□□□□ -0.18
LIG3-212ENST00000590181 TNS4Q8IZW8 715 aa13.9□□□□□ -0.18
LIG3-212ENST00000590181 PHACTR3Q96KR7 559 aa13.9□□□□□ -0.18
LIG3-212ENST00000590181 ARFGEF2Q9Y6D5 1785 aa13.9□□□□□ -0.18
LIG3-212ENST00000590181 SIPA1L3O60292 1781 aaPredicted RBP13.89□□□□□ -0.19
LIG3-212ENST00000590181 COL15A1P39059 1388 aa13.89□□□□□ -0.19
LIG3-212ENST00000590181 BTBD11A6QL63 1104 aa13.89□□□□□ -0.19
LIG3-212ENST00000590181 ZPR1O75312 459 aa13.89□□□□□ -0.19
LIG3-212ENST00000590181 FER1L6Q2WGJ9 1857 aa13.89□□□□□ -0.19
LIG3-212ENST00000590181 RGL2O15211 777 aa13.88□□□□□ -0.19
LIG3-212ENST00000590181 INTS5Q6P9B9 1019 aaKnown RBP13.88□□□□□ -0.19
LIG3-212ENST00000590181 NPM2Q86SE8 214 aaKnown RBP13.88□□□□□ -0.19
LIG3-212ENST00000590181 SOS1Q07889 1333 aaPredicted RBP13.88□□□□□ -0.19
LIG3-212ENST00000590181 MAPK8IP3Q9UPT6 1336 aa13.88□□□□□ -0.19
LIG3-212ENST00000590181 BCORQ6W2J9 1755 aa13.87□□□□□ -0.19
LIG3-212ENST00000590181 TAF7Q15545 349 aaPredicted RBP13.87□□□□□ -0.19
LIG3-212ENST00000590181 BABAM1Q9NWV8 329 aa13.87□□□□□ -0.19
LIG3-212ENST00000590181 CARMIL3Q8ND23 1372 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 HEG1Q9ULI3 1381 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 LMOD3Q0VAK6 560 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 SLC39A6Q13433 755 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 USPL1Q5W0Q7 1092 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 DNAJC10Q8IXB1 793 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 PLEKHF1Q96S99 279 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 NARFQ9UHQ1 456 aa13.86□□□□□ -0.19
LIG3-212ENST00000590181 SNRPA1P09661 255 aaKnown RBP13.85□□□□□ -0.19
LIG3-212ENST00000590181 LMNB1P20700 586 aa13.85□□□□□ -0.19
LIG3-212ENST00000590181 IL6STP40189 918 aaPredicted RBP13.85□□□□□ -0.19
LIG3-212ENST00000590181 NFE2L2Q16236 605 aa13.85□□□□□ -0.19
LIG3-212ENST00000590181 HSPA1AP0DMV8 641 aaKnown RBP13.84□□□□□ -0.19
LIG3-212ENST00000590181 HSPA1BP0DMV9 641 aaKnown RBP13.84□□□□□ -0.19
LIG3-212ENST00000590181 TM4SF1P30408 202 aa13.84□□□□□ -0.19
LIG3-212ENST00000590181 PRELPP51888 382 aa13.84□□□□□ -0.19
LIG3-212ENST00000590181 EIF5P55010 431 aaKnown RBP13.84□□□□□ -0.19
LIG3-212ENST00000590181 ZNF496Q96IT1 587 aaPredicted RBP13.84□□□□□ -0.19
LIG3-212ENST00000590181 PDZRN3Q9UPQ7 1066 aa13.84□□□□□ -0.19
LIG3-212ENST00000590181 NFIXQ14938 502 aa13.83□□□□□ -0.2
LIG3-212ENST00000590181 GLTPD2A6NH11 291 aa13.82□□□□□ -0.2
LIG3-212ENST00000590181 VEGFAP15692 232 aaPredicted RBP13.82□□□□□ -0.2
LIG3-212ENST00000590181 WDR43Q15061 677 aaKnown RBP eCLIP13.82□□□□□ -0.2
LIG3-212ENST00000590181 PRKRIP1Q9H875 184 aaPredicted RBP13.82□□□□□ -0.2
LIG3-212ENST00000590181 ZBTB1Q9Y2K1 713 aa13.82□□□□□ -0.2
LIG3-212ENST00000590181 DLG5Q8TDM6 1919 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms