RNA–Protein interactions for RNA: ENST00000589007.5

RETREG3-207, Transcript of reticulophagy regulator family member 3, humanhuman

TSL 3

Gene RETREG3, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-207ENST00000589007 TM4SF1P30408 202 aa11.9□□□□□ -0.5
RETREG3-207ENST00000589007 ABHD8Q96I13 439 aa11.9□□□□□ -0.5
RETREG3-207ENST00000589007 PARP3Q9Y6F1 533 aa11.9□□□□□ -0.5
RETREG3-207ENST00000589007 MRC1P22897 1456 aa11.89□□□□□ -0.51
RETREG3-207ENST00000589007 HSPA8P11142 646 aaKnown RBP11.89□□□□□ -0.51
RETREG3-207ENST00000589007 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.89□□□□□ -0.51
RETREG3-207ENST00000589007 PDE4DIPQ5VU43 2346 aa11.89□□□□□ -0.51
RETREG3-207ENST00000589007 LMNB1P20700 586 aa11.88□□□□□ -0.51
RETREG3-207ENST00000589007 WBP1LQ9NX94 342 aa11.88□□□□□ -0.51
RETREG3-207ENST00000589007 EYA1Q99502 592 aa11.87□□□□□ -0.51
RETREG3-207ENST00000589007 BCL2L12Q9HB09 334 aa11.87□□□□□ -0.51
RETREG3-207ENST00000589007 TRPM7Q96QT4 1865 aa11.87□□□□□ -0.51
RETREG3-207ENST00000589007 VEGFBP49765 207 aa11.86□□□□□ -0.51
RETREG3-207ENST00000589007 LBX1P52954 281 aa11.86□□□□□ -0.51
RETREG3-207ENST00000589007 CRKLP46109 303 aaKnown RBP11.85□□□□□ -0.51
RETREG3-207ENST00000589007 CTCFP49711 727 aaPredicted RBP11.85□□□□□ -0.51
RETREG3-207ENST00000589007 INTS5Q6P9B9 1019 aaKnown RBP11.85□□□□□ -0.51
RETREG3-207ENST00000589007 CARD11Q9BXL7 1154 aa11.85□□□□□ -0.51
RETREG3-207ENST00000589007 SIPA1L3O60292 1781 aaPredicted RBP11.84□□□□□ -0.51
RETREG3-207ENST00000589007 ITGBL1O95965 494 aaPredicted RBP11.84□□□□□ -0.51
RETREG3-207ENST00000589007 RFC4P35249 363 aa11.84□□□□□ -0.51
RETREG3-207ENST00000589007 CHADLQ6NUI6 762 aa11.84□□□□□ -0.51
RETREG3-207ENST00000589007 IFNL2Q8IZJ0 200 aa11.84□□□□□ -0.51
RETREG3-207ENST00000589007 SPG7Q9UQ90 795 aa11.84□□□□□ -0.51
RETREG3-207ENST00000589007 SNED1Q8TER0 1413 aa11.84□□□□□ -0.51
RETREG3-207ENST00000589007 COL4A5P29400 1685 aa11.84□□□□□ -0.51
RETREG3-207ENST00000589007 SOS1Q07889 1333 aaPredicted RBP11.84□□□□□ -0.51
RETREG3-207ENST00000589007 WASHC2AQ641Q2 1341 aa11.84□□□□□ -0.51
RETREG3-207ENST00000589007 CARD14Q9BXL6 1004 aa11.83□□□□□ -0.52
RETREG3-207ENST00000589007 ERVV-2B6SEH9 535 aa11.82□□□□□ -0.52
RETREG3-207ENST00000589007 NFIXQ14938 502 aa11.82□□□□□ -0.52
RETREG3-207ENST00000589007 LTBP3Q9NS15 1303 aa11.82□□□□□ -0.52
RETREG3-207ENST00000589007 CASP8AP2Q9UKL3 1982 aa11.81□□□□□ -0.52
RETREG3-207ENST00000589007 RASSF10A6NK89 507 aa11.81□□□□□ -0.52
RETREG3-207ENST00000589007 RBM42Q9BTD8 480 aaKnown RBP11.81□□□□□ -0.52
RETREG3-207ENST00000589007 COL15A1P39059 1388 aa11.8□□□□□ -0.52
RETREG3-207ENST00000589007 ST20-MTHFSA0A0A6YYL1 179 aa11.8□□□□□ -0.52
RETREG3-207ENST00000589007 USPL1Q5W0Q7 1092 aa11.8□□□□□ -0.52
RETREG3-207ENST00000589007 L3MBTL3Q96JM7 780 aaPredicted RBP11.8□□□□□ -0.52
RETREG3-207ENST00000589007 DDNO94850 711 aaPredicted RBP11.79□□□□□ -0.52
RETREG3-207ENST00000589007 MLLT1Q03111 559 aaPredicted RBP11.79□□□□□ -0.52
RETREG3-207ENST00000589007 EIF4A2Q14240 407 aaKnown RBP11.79□□□□□ -0.52
RETREG3-207ENST00000589007 TTLL6Q8N841 843 aa11.78□□□□□ -0.52
RETREG3-207ENST00000589007 LDHDQ86WU2 507 aa11.77□□□□□ -0.53
RETREG3-207ENST00000589007 TAF1DQ9H5J8 278 aaPredicted RBP11.77□□□□□ -0.53
RETREG3-207ENST00000589007 POLKQ9UBT6 870 aa11.77□□□□□ -0.53
RETREG3-207ENST00000589007 ZNF541Q9H0D2 1346 aa11.77□□□□□ -0.53
RETREG3-207ENST00000589007 TMEM88BA6NKF7 163 aa11.76□□□□□ -0.53
RETREG3-207ENST00000589007 PTCD1O75127 700 aaKnown RBP11.76□□□□□ -0.53
RETREG3-207ENST00000589007 DNAJC10Q8IXB1 793 aa11.76□□□□□ -0.53
RETREG3-207ENST00000589007 NARFQ9UHQ1 456 aa11.76□□□□□ -0.53
RETREG3-207ENST00000589007 ZBTB1Q9Y2K1 713 aa11.76□□□□□ -0.53
RETREG3-207ENST00000589007 SERPINB2P05120 415 aa11.75□□□□□ -0.53
RETREG3-207ENST00000589007 CYP19A1P11511 503 aaPredicted RBP11.75□□□□□ -0.53
RETREG3-207ENST00000589007 ERFEQ4G0M1 354 aa11.75□□□□□ -0.53
RETREG3-207ENST00000589007 C2CD5Q86YS7 1000 aa11.75□□□□□ -0.53
RETREG3-207ENST00000589007 NEUROD1Q13562 356 aa11.74□□□□□ -0.53
RETREG3-207ENST00000589007 AIDAQ96BJ3 306 aa11.74□□□□□ -0.53
RETREG3-207ENST00000589007 WDR33Q9C0J8 1336 aaKnown RBP11.74□□□□□ -0.53
RETREG3-207ENST00000589007 C21orf2O43822 256 aa11.73□□□□□ -0.53
RETREG3-207ENST00000589007 FMR1Q06787 632 aaKnown RBP eCLIP11.73□□□□□ -0.53
RETREG3-207ENST00000589007 AEBP1Q8IUX7 1158 aa11.73□□□□□ -0.53
RETREG3-207ENST00000589007 C7orf43Q8WVR3 580 aa11.73□□□□□ -0.53
RETREG3-207ENST00000589007 PRR5LQ6MZQ0 368 aa11.72□□□□□ -0.53
RETREG3-207ENST00000589007 MKI67P46013 3256 aaKnown RBP11.71□□□□□ -0.53
RETREG3-207ENST00000589007 CCDC85CA6NKD9 419 aa11.71□□□□□ -0.53
RETREG3-207ENST00000589007 DPY19L2Q6NUT2 758 aa11.71□□□□□ -0.53
RETREG3-207ENST00000589007 ZNF530Q6P9A1 599 aaPredicted RBP11.71□□□□□ -0.53
RETREG3-207ENST00000589007 NFATC2IPQ8NCF5 419 aa11.71□□□□□ -0.53
RETREG3-207ENST00000589007 TAOK3Q9H2K8 898 aa11.71□□□□□ -0.53
RETREG3-207ENST00000589007 HTTP42858 3142 aa11.71□□□□□ -0.54
RETREG3-207ENST00000589007 HSP90AB1P08238 724 aaKnown RBP11.7□□□□□ -0.54
RETREG3-207ENST00000589007 CABP4P57796 275 aa11.7□□□□□ -0.54
RETREG3-207ENST00000589007 TBC1D9BQ66K14 1250 aa11.7□□□□□ -0.54
RETREG3-207ENST00000589007 CCDC24Q8N4L8 307 aa11.7□□□□□ -0.54
RETREG3-207ENST00000589007 MCOLN1Q9GZU1 580 aa11.7□□□□□ -0.54
RETREG3-207ENST00000589007 H0YIN7 160 aa11.69□□□□□ -0.54
RETREG3-207ENST00000589007 DEFB115Q30KQ5 88 aa11.69□□□□□ -0.54
RETREG3-207ENST00000589007 MAP1SQ66K74 1059 aaPredicted RBP11.69□□□□□ -0.54
RETREG3-207ENST00000589007 ZNF219Q9P2Y4 722 aaPredicted RBP11.69□□□□□ -0.54
RETREG3-207ENST00000589007 TSKSQ9UJT2 592 aa11.69□□□□□ -0.54
RETREG3-207ENST00000589007 RNF123Q5XPI4 1314 aa11.68□□□□□ -0.54
RETREG3-207ENST00000589007 IQCA1LA6NCM1 817 aa11.68□□□□□ -0.54
RETREG3-207ENST00000589007 PPM1GO15355 546 aaPredicted RBP11.68□□□□□ -0.54
RETREG3-207ENST00000589007 ZPR1O75312 459 aa11.68□□□□□ -0.54
RETREG3-207ENST00000589007 EIF5P55010 431 aaKnown RBP11.68□□□□□ -0.54
RETREG3-207ENST00000589007 MAP2K1Q02750 393 aaPredicted RBP11.68□□□□□ -0.54
RETREG3-207ENST00000589007 PRPF40BQ6NWY9 871 aaKnown RBP11.68□□□□□ -0.54
RETREG3-207ENST00000589007 BRIP1Q9BX63 1249 aa11.68□□□□□ -0.54
RETREG3-207ENST00000589007 BRCA2P51587 3418 aa11.67□□□□□ -0.54
RETREG3-207ENST00000589007 SRGNP10124 158 aa11.67□□□□□ -0.54
RETREG3-207ENST00000589007 EPHX2P34913 555 aa11.67□□□□□ -0.54
RETREG3-207ENST00000589007 CST9Q5W186 159 aa11.67□□□□□ -0.54
RETREG3-207ENST00000589007 CYP4F22Q6NT55 531 aa11.67□□□□□ -0.54
RETREG3-207ENST00000589007 OLFM4Q6UX06 510 aa11.67□□□□□ -0.54
RETREG3-207ENST00000589007 CAPNS2Q96L46 248 aa11.67□□□□□ -0.54
RETREG3-207ENST00000589007 SLC39A6Q13433 755 aa11.66□□□□□ -0.54
RETREG3-207ENST00000589007 SLC51AQ86UW1 340 aa11.66□□□□□ -0.54
RETREG3-207ENST00000589007 CNTROBQ8N137 903 aa11.66□□□□□ -0.54
RETREG3-207ENST00000589007 SLC52A2Q9HAB3 445 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms