RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 MIS18AQ9NYP9 233 aa14.28□□□□□ -0.12
CLIP3-203ENST00000586457 CD2APQ9Y5K6 639 aa14.28□□□□□ -0.12
CLIP3-203ENST00000586457 UBR3Q6ZT12 1888 aa14.27□□□□□ -0.12
CLIP3-203ENST00000586457 TMPOP42166 694 aaKnown RBP14.27□□□□□ -0.13
CLIP3-203ENST00000586457 RRP7AQ9Y3A4 280 aaKnown RBP14.27□□□□□ -0.13
CLIP3-203ENST00000586457 KCNQ3O43525 872 aa14.26□□□□□ -0.13
CLIP3-203ENST00000586457 TSPYL4Q9UJ04 414 aa14.26□□□□□ -0.13
CLIP3-203ENST00000586457 ZBTB1Q9Y2K1 713 aa14.26□□□□□ -0.13
CLIP3-203ENST00000586457 LAS1LQ9Y4W2 734 aaKnown RBP14.26□□□□□ -0.13
CLIP3-203ENST00000586457 ADAMTS7Q9UKP4 1686 aa14.26□□□□□ -0.13
CLIP3-203ENST00000586457 GYS1P13807 737 aa14.25□□□□□ -0.13
CLIP3-203ENST00000586457 USPL1Q5W0Q7 1092 aa14.25□□□□□ -0.13
CLIP3-203ENST00000586457 THUMPD2Q9BTF0 503 aaKnown RBP14.25□□□□□ -0.13
CLIP3-203ENST00000586457 SRP68Q9UHB9 627 aaKnown RBP14.25□□□□□ -0.13
CLIP3-203ENST00000586457 NARFQ9UHQ1 456 aa14.25□□□□□ -0.13
CLIP3-203ENST00000586457 KCPQ6ZWJ8 1503 aa14.25□□□□□ -0.13
CLIP3-203ENST00000586457 COL5A3P25940 1745 aaPredicted RBP14.24□□□□□ -0.13
CLIP3-203ENST00000586457 SOS1Q07889 1333 aaPredicted RBP14.24□□□□□ -0.13
CLIP3-203ENST00000586457 USP42Q9H9J4 1324 aaKnown RBP14.24□□□□□ -0.13
CLIP3-203ENST00000586457 NPHP1O15259 732 aa14.24□□□□□ -0.13
CLIP3-203ENST00000586457 IL6STP40189 918 aaPredicted RBP14.24□□□□□ -0.13
CLIP3-203ENST00000586457 MRS2Q9HD23 443 aa14.24□□□□□ -0.13
CLIP3-203ENST00000586457 COL15A1P39059 1388 aa14.23□□□□□ -0.13
CLIP3-203ENST00000586457 A1BGP04217 495 aa14.23□□□□□ -0.13
CLIP3-203ENST00000586457 USP16Q9Y5T5 823 aa14.23□□□□□ -0.13
CLIP3-203ENST00000586457 TJP1Q07157 1748 aa14.22□□□□□ -0.13
CLIP3-203ENST00000586457 GRIN3BO60391 1043 aa14.22□□□□□ -0.13
CLIP3-203ENST00000586457 CALD1Q05682 793 aaKnown RBP14.22□□□□□ -0.13
CLIP3-203ENST00000586457 FKBP8Q14318 412 aa14.22□□□□□ -0.13
CLIP3-203ENST00000586457 NLGN2Q8NFZ4 835 aa14.22□□□□□ -0.13
CLIP3-203ENST00000586457 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
CLIP3-203ENST00000586457 TBC1D2BQ9UPU7 963 aa14.22□□□□□ -0.13
CLIP3-203ENST00000586457 YY1P25490 414 aa14.21□□□□□ -0.13
CLIP3-203ENST00000586457 EIF5P55010 431 aaKnown RBP14.21□□□□□ -0.13
CLIP3-203ENST00000586457 BICDL1Q6ZP65 573 aa14.21□□□□□ -0.13
CLIP3-203ENST00000586457 SIPA1L3O60292 1781 aaPredicted RBP14.2□□□□□ -0.14
CLIP3-203ENST00000586457 APAF1O14727 1248 aa14.2□□□□□ -0.14
CLIP3-203ENST00000586457 TGFB2P61812 414 aa14.2□□□□□ -0.14
CLIP3-203ENST00000586457 DZIP3Q86Y13 1208 aaKnown RBP14.2□□□□□ -0.14
CLIP3-203ENST00000586457 ZNF652Q9Y2D9 606 aa14.2□□□□□ -0.14
CLIP3-203ENST00000586457 MYH14Q7Z406 1995 aaKnown RBP14.2□□□□□ -0.14
CLIP3-203ENST00000586457 UBR2Q8IWV8 1755 aa14.19□□□□□ -0.14
CLIP3-203ENST00000586457 PRAMEF22A3QJZ6 481 aa14.19□□□□□ -0.14
CLIP3-203ENST00000586457 EIF4A1P60842 406 aaKnown RBP14.19□□□□□ -0.14
CLIP3-203ENST00000586457 NGEFQ8N5V2 710 aa14.19□□□□□ -0.14
CLIP3-203ENST00000586457 SETDB2Q96T68 719 aa14.19□□□□□ -0.14
CLIP3-203ENST00000586457 DLG5Q8TDM6 1919 aa14.19□□□□□ -0.14
CLIP3-203ENST00000586457 GIGYF1O75420 1035 aaPredicted RBP14.18□□□□□ -0.14
CLIP3-203ENST00000586457 EIF2S2P20042 333 aaKnown RBP14.18□□□□□ -0.14
CLIP3-203ENST00000586457 PIP4K2AP48426 406 aaPredicted RBP14.18□□□□□ -0.14
CLIP3-203ENST00000586457 CICQ96RK0 1608 aaPredicted RBP14.18□□□□□ -0.14
CLIP3-203ENST00000586457 COL24A1Q17RW2 1714 aa14.18□□□□□ -0.14
CLIP3-203ENST00000586457 SERPINB2P05120 415 aa14.17□□□□□ -0.14
CLIP3-203ENST00000586457 MYL6BP14649 208 aa14.17□□□□□ -0.14
CLIP3-203ENST00000586457 TM4SF1P30408 202 aa14.17□□□□□ -0.14
CLIP3-203ENST00000586457 NFIXQ14938 502 aa14.17□□□□□ -0.14
CLIP3-203ENST00000586457 KIF6Q6ZMV9 814 aa14.17□□□□□ -0.14
CLIP3-203ENST00000586457 WWC3Q9ULE0 1092 aa14.17□□□□□ -0.14
CLIP3-203ENST00000586457 A0A0G2JLW4 131 aa14.16□□□□□ -0.14
CLIP3-203ENST00000586457 TRIM35Q9UPQ4 493 aa14.16□□□□□ -0.14
CLIP3-203ENST00000586457 POLRMTO00411 1230 aaKnown RBP14.15□□□□□ -0.14
CLIP3-203ENST00000586457 GTF2E1P29083 439 aaPredicted RBP14.15□□□□□ -0.14
CLIP3-203ENST00000586457 GNAI1P63096 354 aa14.15□□□□□ -0.14
CLIP3-203ENST00000586457 DDR1Q08345 913 aa14.15□□□□□ -0.14
CLIP3-203ENST00000586457 FAM9BQ8IZU0 186 aa14.15□□□□□ -0.14
CLIP3-203ENST00000586457 BCS1LQ9Y276 419 aa14.15□□□□□ -0.14
CLIP3-203ENST00000586457 CHL1O00533 1208 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 CCDC184Q52MB2 194 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 TBC1D9BQ66K14 1250 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 CLEC4GQ6UXB4 293 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 CFAP44Q96MT7 982 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 CHMP4AQ9BY43 222 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 PIM2Q9P1W9 311 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 C4AP0C0L4 1744 aa14.14□□□□□ -0.15
CLIP3-203ENST00000586457 H0YIN7 160 aa14.13□□□□□ -0.15
CLIP3-203ENST00000586457 DPEP1P16444 411 aa14.13□□□□□ -0.15
CLIP3-203ENST00000586457 ST5P78524 1137 aa14.13□□□□□ -0.15
CLIP3-203ENST00000586457 NECTIN2Q92692 538 aa14.13□□□□□ -0.15
CLIP3-203ENST00000586457 CARMIL3Q8ND23 1372 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 NBPF26B4DH59 902 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 CAMTA2O94983 1202 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 YBX3P16989 372 aaKnown RBP eCLIP14.12□□□□□ -0.15
CLIP3-203ENST00000586457 PDE6BP35913 854 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 DALRD3Q5D0E6 543 aaKnown RBP14.12□□□□□ -0.15
CLIP3-203ENST00000586457 NBPF10Q6P3W6 841 aaKnown RBP14.12□□□□□ -0.15
CLIP3-203ENST00000586457 NBPF5PQ86XG9 351 aaPredicted RBP14.12□□□□□ -0.15
CLIP3-203ENST00000586457 NBPF15Q8N660 670 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 CNBD1Q8NA66 436 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 BCL2L12Q9HB09 334 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 NIP7Q9Y221 180 aaKnown RBP eCLIP14.12□□□□□ -0.15
CLIP3-203ENST00000586457 ERBB4Q15303 1308 aa14.12□□□□□ -0.15
CLIP3-203ENST00000586457 TPTE2Q6XPS3 522 aa14.11□□□□□ -0.15
CLIP3-203ENST00000586457 ARHGAP27Q6ZUM4 889 aa14.11□□□□□ -0.15
CLIP3-203ENST00000586457 IFT57Q9NWB7 429 aa14.11□□□□□ -0.15
CLIP3-203ENST00000586457 PDZRN3Q9UPQ7 1066 aa14.11□□□□□ -0.15
CLIP3-203ENST00000586457 SALL2Q9Y467 1007 aaPredicted RBP14.11□□□□□ -0.15
CLIP3-203ENST00000586457 C10orf71Q711Q0 1435 aa14.1□□□□□ -0.15
CLIP3-203ENST00000586457 SENP3-EIF4A1A0A087X0R7 540 aa14.1□□□□□ -0.15
CLIP3-203ENST00000586457 FAM177BA6PVY3 158 aa14.1□□□□□ -0.15
CLIP3-203ENST00000586457 ERVV-1B6SEH8 477 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms