RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 MICALL2Q8IY33 904 aa12.88□□□□□ -0.35
SMCHD1-212ENST00000585229 ZCRB1Q8TBF4 217 aaKnown RBP12.88□□□□□ -0.35
SMCHD1-212ENST00000585229 BOLA1Q9Y3E2 137 aa12.88□□□□□ -0.35
SMCHD1-212ENST00000585229 CYP27B1O15528 508 aa12.87□□□□□ -0.35
SMCHD1-212ENST00000585229 C1orf141Q5JVX7 400 aa12.87□□□□□ -0.35
SMCHD1-212ENST00000585229 IFNL2Q8IZJ0 200 aa12.87□□□□□ -0.35
SMCHD1-212ENST00000585229 IFT57Q9NWB7 429 aa12.87□□□□□ -0.35
SMCHD1-212ENST00000585229 HSP90AB1P08238 724 aaKnown RBP12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 DCTN1Q14203 1278 aa12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 LHX8Q68G74 356 aa12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 MCM10Q7L590 875 aa12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 IL17REQ8NFR9 667 aa12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 RTF1Q92541 710 aaKnown RBP12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 THUMPD2Q9BTF0 503 aaKnown RBP12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 BABAM1Q9NWV8 329 aa12.86□□□□□ -0.35
SMCHD1-212ENST00000585229 PAPPAQ13219 1627 aa12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 RNMTO43148 476 aaKnown RBP12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 GNAI1P63096 354 aa12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 L3MBTL3Q96JM7 780 aaPredicted RBP12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 MYH16Q9H6N6 1097 aa12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 USP35Q9P2H5 1018 aa12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 TRPC5Q9UL62 973 aaPredicted RBP12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 FANCIQ9NVI1 1328 aa12.85□□□□□ -0.35
SMCHD1-212ENST00000585229 CHL1O00533 1208 aa12.84□□□□□ -0.35
SMCHD1-212ENST00000585229 ONECUT3O60422 494 aaPredicted RBP12.84□□□□□ -0.35
SMCHD1-212ENST00000585229 ITGB4P16144 1822 aa12.83□□□□□ -0.35
SMCHD1-212ENST00000585229 DOT1LQ8TEK3 1739 aa12.83□□□□□ -0.36
SMCHD1-212ENST00000585229 DCAF5Q96JK2 942 aa12.83□□□□□ -0.36
SMCHD1-212ENST00000585229 GJD4Q96KN9 370 aaPredicted RBP12.83□□□□□ -0.36
SMCHD1-212ENST00000585229 LGR6Q9HBX8 967 aa12.83□□□□□ -0.36
SMCHD1-212ENST00000585229 TSHZ2Q9NRE2 1034 aa12.83□□□□□ -0.36
SMCHD1-212ENST00000585229 UBR2Q8IWV8 1755 aa12.82□□□□□ -0.36
SMCHD1-212ENST00000585229 MPRIPQ6WCQ1 1025 aa12.82□□□□□ -0.36
SMCHD1-212ENST00000585229 VSIG10Q8N0Z9 540 aa12.82□□□□□ -0.36
SMCHD1-212ENST00000585229 CCDC9Q9Y3X0 531 aaKnown RBP12.82□□□□□ -0.36
SMCHD1-212ENST00000585229 BCL9O00512 1426 aa12.81□□□□□ -0.36
SMCHD1-212ENST00000585229 EXOC5O00471 708 aa12.81□□□□□ -0.36
SMCHD1-212ENST00000585229 CT47B1P0C2W7 299 aaPredicted RBP12.81□□□□□ -0.36
SMCHD1-212ENST00000585229 TAF7Q15545 349 aaPredicted RBP12.81□□□□□ -0.36
SMCHD1-212ENST00000585229 DDB1Q16531 1140 aa12.81□□□□□ -0.36
SMCHD1-212ENST00000585229 ZNF772Q68DY9 489 aaPredicted RBP12.81□□□□□ -0.36
SMCHD1-212ENST00000585229 MBIPQ9NS73 344 aa12.81□□□□□ -0.36
SMCHD1-212ENST00000585229 ERVV-2B6SEH9 535 aa12.8□□□□□ -0.36
SMCHD1-212ENST00000585229 FAM98CQ17RN3 349 aaKnown RBP12.8□□□□□ -0.36
SMCHD1-212ENST00000585229 TSR2Q969E8 191 aaKnown RBP12.8□□□□□ -0.36
SMCHD1-212ENST00000585229 QTRT2Q9H974 415 aaKnown RBP12.8□□□□□ -0.36
SMCHD1-212ENST00000585229 SLC52A2Q9HAB3 445 aa12.8□□□□□ -0.36
SMCHD1-212ENST00000585229 BRWD3Q6RI45 1802 aa12.79□□□□□ -0.36
SMCHD1-212ENST00000585229 TEFQ10587 303 aa12.79□□□□□ -0.36
SMCHD1-212ENST00000585229 TMEM92Q6UXU6 159 aa12.79□□□□□ -0.36
SMCHD1-212ENST00000585229 OTUD5Q96G74 571 aa12.79□□□□□ -0.36
SMCHD1-212ENST00000585229 MARCH10Q8NA82 808 aaPredicted RBP12.78□□□□□ -0.36
SMCHD1-212ENST00000585229 RNF123Q5XPI4 1314 aa12.78□□□□□ -0.36
SMCHD1-212ENST00000585229 SBF2Q86WG5 1849 aa12.78□□□□□ -0.36
SMCHD1-212ENST00000585229 HEG1Q9ULI3 1381 aa12.78□□□□□ -0.36
SMCHD1-212ENST00000585229 NHSQ6T4R5 1651 aa12.77□□□□□ -0.36
SMCHD1-212ENST00000585229 EXOSC9Q06265 439 aaKnown RBP12.77□□□□□ -0.37
SMCHD1-212ENST00000585229 DDX54Q8TDD1 881 aaKnown RBP12.77□□□□□ -0.37
SMCHD1-212ENST00000585229 TSPYL4Q9UJ04 414 aa12.77□□□□□ -0.37
SMCHD1-212ENST00000585229 LAS1LQ9Y4W2 734 aaKnown RBP12.77□□□□□ -0.37
SMCHD1-212ENST00000585229 SOS1Q07889 1333 aaPredicted RBP12.77□□□□□ -0.37
SMCHD1-212ENST00000585229 CICQ96RK0 1608 aaPredicted RBP12.77□□□□□ -0.37
SMCHD1-212ENST00000585229 LAMB4A4D0S4 1761 aa12.76□□□□□ -0.37
SMCHD1-212ENST00000585229 CACNA1FO60840 1977 aa12.76□□□□□ -0.37
SMCHD1-212ENST00000585229 RBM6P78332 1123 aaKnown RBP12.76□□□□□ -0.37
SMCHD1-212ENST00000585229 ZNF428Q96B54 188 aa12.76□□□□□ -0.37
SMCHD1-212ENST00000585229 RCAN3Q9UKA8 241 aa12.76□□□□□ -0.37
SMCHD1-212ENST00000585229 KCPQ6ZWJ8 1503 aa12.76□□□□□ -0.37
SMCHD1-212ENST00000585229 G3V3G9 751 aa12.75□□□□□ -0.37
SMCHD1-212ENST00000585229 C5P01031 1676 aa12.75□□□□□ -0.37
SMCHD1-212ENST00000585229 HOXB7P09629 217 aa12.75□□□□□ -0.37
SMCHD1-212ENST00000585229 RGS17Q9UGC6 210 aaPredicted RBP12.75□□□□□ -0.37
SMCHD1-212ENST00000585229 ZNF831Q5JPB2 1677 aa12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 BTBD11A6QL63 1104 aa12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 VAMP4O75379 141 aa12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 CABP4P57796 275 aa12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 EIF4A1P60842 406 aaKnown RBP12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 SEPT12Q8IYM1 358 aa12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 C8orf58Q8NAV2 365 aa12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 NFATC2IPQ8NCF5 419 aa12.74□□□□□ -0.37
SMCHD1-212ENST00000585229 RARSP54136 660 aaKnown RBP12.73□□□□□ -0.37
SMCHD1-212ENST00000585229 ZNF790Q6PG37 636 aa12.73□□□□□ -0.37
SMCHD1-212ENST00000585229 C3orf67Q6ZVT6 689 aa12.73□□□□□ -0.37
SMCHD1-212ENST00000585229 TSPYL6Q8N831 410 aa12.73□□□□□ -0.37
SMCHD1-212ENST00000585229 MIS18AQ9NYP9 233 aa12.73□□□□□ -0.37
SMCHD1-212ENST00000585229 KCNQ3O43525 872 aa12.72□□□□□ -0.37
SMCHD1-212ENST00000585229 BRPF1P55201 1214 aaPredicted RBP12.72□□□□□ -0.37
SMCHD1-212ENST00000585229 TWISTNBQ3B726 338 aaPredicted RBP12.72□□□□□ -0.37
SMCHD1-212ENST00000585229 ALDH1L2Q3SY69 923 aa12.72□□□□□ -0.37
SMCHD1-212ENST00000585229 BTAF1O14981 1849 aa12.72□□□□□ -0.37
SMCHD1-212ENST00000585229 RGS12O14924 1447 aa12.71□□□□□ -0.37
SMCHD1-212ENST00000585229 MAMSTRQ6ZN01 415 aa12.71□□□□□ -0.37
SMCHD1-212ENST00000585229 PIGBQ92521 554 aa12.71□□□□□ -0.37
SMCHD1-212ENST00000585229 SCUBE2Q9NQ36 999 aa12.71□□□□□ -0.37
SMCHD1-212ENST00000585229 TMOD3Q9NYL9 352 aa12.71□□□□□ -0.37
SMCHD1-212ENST00000585229 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.71□□□□□ -0.37
SMCHD1-212ENST00000585229 KAT6BQ8WYB5 2073 aa12.7□□□□□ -0.38
SMCHD1-212ENST00000585229 KRT24Q2M2I5 525 aa12.7□□□□□ -0.38
SMCHD1-212ENST00000585229 TJP1Q07157 1748 aa12.7□□□□□ -0.38
SMCHD1-212ENST00000585229 LY75O60449 1722 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms