RNA–Protein interactions for RNA: ENST00000584541.1

RFFL-211, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-211ENST00000584541 NECTIN2Q92692 538 aa23.52■■□□□ 1.36
RFFL-211ENST00000584541 STK31Q9BXU1 1019 aa23.52■■□□□ 1.36
RFFL-211ENST00000584541 ITPK1Q13572 414 aa23.51■■□□□ 1.35
RFFL-211ENST00000584541 ALDH1L2Q3SY69 923 aa23.51■■□□□ 1.35
RFFL-211ENST00000584541 CYP19A1P11511 503 aaPredicted RBP23.5■■□□□ 1.35
RFFL-211ENST00000584541 RCAN3Q9UKA8 241 aa23.5■■□□□ 1.35
RFFL-211ENST00000584541 ERBB4Q15303 1308 aa23.5■■□□□ 1.35
RFFL-211ENST00000584541 KCNQ4P56696 695 aa23.49■■□□□ 1.35
RFFL-211ENST00000584541 EN1Q05925 392 aaPredicted RBP23.49■■□□□ 1.35
RFFL-211ENST00000584541 DBF4Q9UBU7 674 aaPredicted RBP23.49■■□□□ 1.35
RFFL-211ENST00000584541 C4BP0C0L5 1744 aa23.48■■□□□ 1.35
RFFL-211ENST00000584541 RARSP54136 660 aaKnown RBP23.48■■□□□ 1.35
RFFL-211ENST00000584541 UPF1Q92900 1129 aaKnown RBP eCLIP23.48■■□□□ 1.35
RFFL-211ENST00000584541 RREB1Q92766 1687 aa23.48■■□□□ 1.35
RFFL-211ENST00000584541 LINC00116Q8NCU8 138 aa23.47■■□□□ 1.35
RFFL-211ENST00000584541 CAMKK2Q96RR4 588 aa23.47■■□□□ 1.35
RFFL-211ENST00000584541 LRRC4BQ9NT99 713 aa23.47■■□□□ 1.35
RFFL-211ENST00000584541 SMC4Q9NTJ3 1288 aa23.47■■□□□ 1.35
RFFL-211ENST00000584541 TCERG1O14776 1098 aaKnown RBP23.46■■□□□ 1.35
RFFL-211ENST00000584541 CRKLP46109 303 aaKnown RBP23.46■■□□□ 1.35
RFFL-211ENST00000584541 EZH2Q15910 746 aaKnown RBP23.46■■□□□ 1.35
RFFL-211ENST00000584541 MYH14Q7Z406 1995 aaKnown RBP23.46■■□□□ 1.35
RFFL-211ENST00000584541 DEFB132Q7Z7B7 95 aa23.46■■□□□ 1.35
RFFL-211ENST00000584541 PROM2Q8N271 834 aa23.46■■□□□ 1.35
RFFL-211ENST00000584541 SSH1Q8WYL5 1049 aa23.46■■□□□ 1.35
RFFL-211ENST00000584541 CNTNAP4Q9C0A0 1308 aa23.46■■□□□ 1.35
RFFL-211ENST00000584541 DDX21Q9NR30 783 aaKnown RBP eCLIP23.46■■□□□ 1.35
RFFL-211ENST00000584541 CCDC87Q9NVE4 849 aa23.46■■□□□ 1.35
RFFL-211ENST00000584541 CHPF2Q9P2E5 772 aa23.46■■□□□ 1.35
RFFL-211ENST00000584541 A1BGP04217 495 aa23.45■■□□□ 1.34
RFFL-211ENST00000584541 RC3H1Q5TC82 1133 aaKnown RBP23.45■■□□□ 1.34
RFFL-211ENST00000584541 SLC4A2P04920 1241 aa23.44■■□□□ 1.34
RFFL-211ENST00000584541 NPM2Q86SE8 214 aaKnown RBP23.44■■□□□ 1.34
RFFL-211ENST00000584541 BCL2L13Q9BXK5 485 aa23.44■■□□□ 1.34
RFFL-211ENST00000584541 HYPKQ9NX55 129 aa23.44■■□□□ 1.34
RFFL-211ENST00000584541 NUP188Q5SRE5 1749 aa23.43■■□□□ 1.34
RFFL-211ENST00000584541 MYL6BP14649 208 aa23.43■■□□□ 1.34
RFFL-211ENST00000584541 CANXP27824 592 aaKnown RBP23.43■■□□□ 1.34
RFFL-211ENST00000584541 AK7Q96M32 723 aa23.43■■□□□ 1.34
RFFL-211ENST00000584541 INTS5Q6P9B9 1019 aaKnown RBP23.42■■□□□ 1.34
RFFL-211ENST00000584541 MRPL50Q8N5N7 158 aaKnown RBP23.42■■□□□ 1.34
RFFL-211ENST00000584541 ZBTB1Q9Y2K1 713 aa23.42■■□□□ 1.34
RFFL-211ENST00000584541 KIF16BQ96L93 1317 aa23.41■■□□□ 1.34
RFFL-211ENST00000584541 PDIA6Q15084 440 aa23.41■■□□□ 1.34
RFFL-211ENST00000584541 NBPF26B4DH59 902 aa23.4■■□□□ 1.34
RFFL-211ENST00000584541 BCAR3O75815 825 aa23.4■■□□□ 1.34
RFFL-211ENST00000584541 ANXA1P04083 346 aa23.4■■□□□ 1.34
RFFL-211ENST00000584541 IL6STP40189 918 aaPredicted RBP23.4■■□□□ 1.34
RFFL-211ENST00000584541 PIP4K2AP48426 406 aaPredicted RBP23.4■■□□□ 1.34
RFFL-211ENST00000584541 BRPF1P55201 1214 aaPredicted RBP23.4■■□□□ 1.34
RFFL-211ENST00000584541 NBPF14Q5TI25 921 aa23.4■■□□□ 1.34
RFFL-211ENST00000584541 NBPF10Q6P3W6 841 aaKnown RBP23.4■■□□□ 1.34
RFFL-211ENST00000584541 NBPF15Q8N660 670 aa23.4■■□□□ 1.34
RFFL-211ENST00000584541 ZNF330Q9Y3S2 320 aaPredicted RBP23.4■■□□□ 1.34
RFFL-211ENST00000584541 UBR3Q6ZT12 1888 aa23.39■■□□□ 1.34
RFFL-211ENST00000584541 GNPATO15228 680 aa23.39■■□□□ 1.33
RFFL-211ENST00000584541 PROSER3Q2NL68 480 aa23.39■■□□□ 1.33
RFFL-211ENST00000584541 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.38■■□□□ 1.33
RFFL-211ENST00000584541 RTCBQ9Y3I0 505 aaKnown RBP23.38■■□□□ 1.33
RFFL-211ENST00000584541 IPO8O15397 1037 aaKnown RBP23.37■■□□□ 1.33
RFFL-211ENST00000584541 RPS6KA4O75676 772 aa23.37■■□□□ 1.33
RFFL-211ENST00000584541 DDX58O95786 925 aaKnown RBP23.36■■□□□ 1.33
RFFL-211ENST00000584541 FLIIQ13045 1269 aa23.36■■□□□ 1.33
RFFL-211ENST00000584541 FRAT1Q92837 279 aaPredicted RBP23.36■■□□□ 1.33
RFFL-211ENST00000584541 PHAXQ9H814 394 aaKnown RBP23.36■■□□□ 1.33
RFFL-211ENST00000584541 PTPRCP08575 1304 aa23.35■■□□□ 1.33
RFFL-211ENST00000584541 A0A087WZG4 1122 aa23.35■■□□□ 1.33
RFFL-211ENST00000584541 EIF5P55010 431 aaKnown RBP23.35■■□□□ 1.33
RFFL-211ENST00000584541 AIMP1Q12904 312 aaKnown RBP23.35■■□□□ 1.33
RFFL-211ENST00000584541 XAGE3Q8WTP9 111 aa23.35■■□□□ 1.33
RFFL-211ENST00000584541 STK32BQ9NY57 414 aa23.35■■□□□ 1.33
RFFL-211ENST00000584541 NOB1Q9ULX3 412 aaKnown RBP23.35■■□□□ 1.33
RFFL-211ENST00000584541 COL15A1P39059 1388 aa23.35■■□□□ 1.33
RFFL-211ENST00000584541 TUBGCP6Q96RT7 1819 aa23.34■■□□□ 1.33
RFFL-211ENST00000584541 FKBP5Q13451 457 aaPredicted RBP23.34■■□□□ 1.33
RFFL-211ENST00000584541 KIF6Q6ZMV9 814 aa23.34■■□□□ 1.33
RFFL-211ENST00000584541 COPS6Q7L5N1 327 aa23.34■■□□□ 1.33
RFFL-211ENST00000584541 G2E3Q7L622 706 aa23.34■■□□□ 1.33
RFFL-211ENST00000584541 LRP10Q7Z4F1 713 aa23.34■■□□□ 1.33
RFFL-211ENST00000584541 ARXQ96QS3 562 aa23.34■■□□□ 1.33
RFFL-211ENST00000584541 QSER1Q2KHR3 1735 aa23.33■■□□□ 1.33
RFFL-211ENST00000584541 ZKSCAN2Q63HK3 967 aa23.33■■□□□ 1.33
RFFL-211ENST00000584541 AKT1S1Q96B36 256 aa23.33■■□□□ 1.33
RFFL-211ENST00000584541 TFCP2L1Q9NZI6 479 aa23.33■■□□□ 1.33
RFFL-211ENST00000584541 ADRA2BP18089 450 aa23.32■■□□□ 1.32
RFFL-211ENST00000584541 SSFA2P28290 1259 aa23.32■■□□□ 1.32
RFFL-211ENST00000584541 TRAPPC3LQ5T215 181 aa23.32■■□□□ 1.32
RFFL-211ENST00000584541 ARHGAP45Q92619 1136 aa23.32■■□□□ 1.32
RFFL-211ENST00000584541 C4AP0C0L4 1744 aa23.32■■□□□ 1.32
RFFL-211ENST00000584541 ZNF827Q17R98 1081 aa23.31■■□□□ 1.32
RFFL-211ENST00000584541 DZIP3Q86Y13 1208 aaKnown RBP23.31■■□□□ 1.32
RFFL-211ENST00000584541 FLAD1Q8NFF5 587 aa23.31■■□□□ 1.32
RFFL-211ENST00000584541 API5Q9BZZ5 524 aaKnown RBP23.31■■□□□ 1.32
RFFL-211ENST00000584541 SUPT16HQ9Y5B9 1047 aaKnown RBP23.31■■□□□ 1.32
RFFL-211ENST00000584541 ARFGEF2Q9Y6D5 1785 aa23.31■■□□□ 1.32
RFFL-211ENST00000584541 PHF14O94880 888 aa23.3■■□□□ 1.32
RFFL-211ENST00000584541 SLC15A2Q16348 729 aa23.3■■□□□ 1.32
RFFL-211ENST00000584541 ANKRD13DQ6ZTN6 518 aa23.3■■□□□ 1.32
RFFL-211ENST00000584541 BCORQ6W2J9 1755 aa23.29■■□□□ 1.32
RFFL-211ENST00000584541 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms