RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 HOXB7P09629 217 aa14.09□□□□□ -0.15
TOP3A-216ENST00000583804 CYP19A1P11511 503 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-216ENST00000583804 HMGB2P26583 209 aaKnown RBP14.09□□□□□ -0.15
TOP3A-216ENST00000583804 IRX6P78412 446 aaPredicted RBP14.09□□□□□ -0.15
TOP3A-216ENST00000583804 LY75O60449 1722 aa14.09□□□□□ -0.15
TOP3A-216ENST00000583804 SOS1Q07889 1333 aaPredicted RBP14.08□□□□□ -0.16
TOP3A-216ENST00000583804 A1BGP04217 495 aa14.08□□□□□ -0.16
TOP3A-216ENST00000583804 BCL2L13Q9BXK5 485 aa14.08□□□□□ -0.16
TOP3A-216ENST00000583804 CHMP4AQ9BY43 222 aa14.08□□□□□ -0.16
TOP3A-216ENST00000583804 RCAN3Q9UKA8 241 aa14.08□□□□□ -0.16
TOP3A-216ENST00000583804 CANXP27824 592 aaKnown RBP14.07□□□□□ -0.16
TOP3A-216ENST00000583804 CRKLP46109 303 aaKnown RBP14.07□□□□□ -0.16
TOP3A-216ENST00000583804 PIP4K2AP48426 406 aaPredicted RBP14.07□□□□□ -0.16
TOP3A-216ENST00000583804 CCDC30Q5VVM6 783 aa14.07□□□□□ -0.16
TOP3A-216ENST00000583804 INTS5Q6P9B9 1019 aaKnown RBP14.06□□□□□ -0.16
TOP3A-216ENST00000583804 AK7Q96M32 723 aa14.06□□□□□ -0.16
TOP3A-216ENST00000583804 CCDC87Q9NVE4 849 aa14.06□□□□□ -0.16
TOP3A-216ENST00000583804 TJP1Q07157 1748 aa14.06□□□□□ -0.16
TOP3A-216ENST00000583804 GNPATO15228 680 aa14.06□□□□□ -0.16
TOP3A-216ENST00000583804 CT47B1P0C2W7 299 aaPredicted RBP14.06□□□□□ -0.16
TOP3A-216ENST00000583804 MYL6BP14649 208 aa14.06□□□□□ -0.16
TOP3A-216ENST00000583804 RC3H1Q5TC82 1133 aaKnown RBP14.06□□□□□ -0.16
TOP3A-216ENST00000583804 STK31Q9BXU1 1019 aa14.06□□□□□ -0.16
TOP3A-216ENST00000583804 CHPF2Q9P2E5 772 aa14.06□□□□□ -0.16
TOP3A-216ENST00000583804 ZNF330Q9Y3S2 320 aaPredicted RBP14.06□□□□□ -0.16
TOP3A-216ENST00000583804 C5P01031 1676 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 CNTNAP4Q9C0A0 1308 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 NBPF26B4DH59 902 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 ANXA1P04083 346 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 NBPF14Q5TI25 921 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 NBPF10Q6P3W6 841 aaKnown RBP14.05□□□□□ -0.16
TOP3A-216ENST00000583804 NPM2Q86SE8 214 aaKnown RBP14.05□□□□□ -0.16
TOP3A-216ENST00000583804 NBPF15Q8N660 670 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 STK32BQ9NY57 414 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 ZBTB1Q9Y2K1 713 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 RGPD3A6NKT7 1758 aaPredicted RBP14.05□□□□□ -0.16
TOP3A-216ENST00000583804 RGPD4Q7Z3J3 1758 aa14.05□□□□□ -0.16
TOP3A-216ENST00000583804 ZNF831Q5JPB2 1677 aa14.04□□□□□ -0.16
TOP3A-216ENST00000583804 PLIN1O60240 522 aa14.04□□□□□ -0.16
TOP3A-216ENST00000583804 ARXQ96QS3 562 aa14.04□□□□□ -0.16
TOP3A-216ENST00000583804 DDX21Q9NR30 783 aaKnown RBP eCLIP14.04□□□□□ -0.16
TOP3A-216ENST00000583804 TFCP2L1Q9NZI6 479 aa14.04□□□□□ -0.16
TOP3A-216ENST00000583804 DBF4Q9UBU7 674 aaPredicted RBP14.04□□□□□ -0.16
TOP3A-216ENST00000583804 ERBB4Q15303 1308 aa14.03□□□□□ -0.16
TOP3A-216ENST00000583804 BCAR3O75815 825 aa14.03□□□□□ -0.16
TOP3A-216ENST00000583804 SLC4A2P04920 1241 aa14.03□□□□□ -0.16
TOP3A-216ENST00000583804 ZNF827Q17R98 1081 aa14.03□□□□□ -0.16
TOP3A-216ENST00000583804 PROSER3Q2NL68 480 aa14.03□□□□□ -0.16
TOP3A-216ENST00000583804 SMIM5Q71RC9 77 aa14.03□□□□□ -0.16
TOP3A-216ENST00000583804 SSH1Q8WYL5 1049 aa14.03□□□□□ -0.16
TOP3A-216ENST00000583804 RTCBQ9Y3I0 505 aaKnown RBP14.03□□□□□ -0.16
TOP3A-216ENST00000583804 RPS6KA4O75676 772 aa14.02□□□□□ -0.16
TOP3A-216ENST00000583804 PHF14O94880 888 aa14.02□□□□□ -0.16
TOP3A-216ENST00000583804 PDIA6Q15084 440 aa14.02□□□□□ -0.16
TOP3A-216ENST00000583804 AKT1S1Q96B36 256 aa14.02□□□□□ -0.16
TOP3A-216ENST00000583804 ZNF428Q96B54 188 aa14.02□□□□□ -0.16
TOP3A-216ENST00000583804 ANO8Q9HCE9 1232 aaPredicted RBP14.02□□□□□ -0.16
TOP3A-216ENST00000583804 SMC4Q9NTJ3 1288 aa14.02□□□□□ -0.16
TOP3A-216ENST00000583804 C4BP0C0L5 1744 aa14.02□□□□□ -0.17
TOP3A-216ENST00000583804 LAMB4A4D0S4 1761 aa14.01□□□□□ -0.17
TOP3A-216ENST00000583804 IL6STP40189 918 aaPredicted RBP14.01□□□□□ -0.17
TOP3A-216ENST00000583804 RARSP54136 660 aaKnown RBP14.01□□□□□ -0.17
TOP3A-216ENST00000583804 AIMP1Q12904 312 aaKnown RBP14.01□□□□□ -0.17
TOP3A-216ENST00000583804 SLC15A2Q16348 729 aa14.01□□□□□ -0.17
TOP3A-216ENST00000583804 HYPKQ9NX55 129 aa14.01□□□□□ -0.17
TOP3A-216ENST00000583804 TAF1LQ8IZX4 1826 aa14.01□□□□□ -0.17
TOP3A-216ENST00000583804 CICQ96RK0 1608 aaPredicted RBP14.01□□□□□ -0.17
TOP3A-216ENST00000583804 COL5A3P25940 1745 aaPredicted RBP14□□□□□ -0.17
TOP3A-216ENST00000583804 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14□□□□□ -0.17
TOP3A-216ENST00000583804 EIF5P55010 431 aaKnown RBP14□□□□□ -0.17
TOP3A-216ENST00000583804 ALDH1L2Q3SY69 923 aa14□□□□□ -0.17
TOP3A-216ENST00000583804 TRAPPC3LQ5T215 181 aa14□□□□□ -0.17
TOP3A-216ENST00000583804 RREB1Q92766 1687 aa14□□□□□ -0.17
TOP3A-216ENST00000583804 MSH5O43196 834 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 RRP1P56182 461 aaKnown RBP13.99□□□□□ -0.17
TOP3A-216ENST00000583804 COPS6Q7L5N1 327 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 AMIGO3Q86WK7 504 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 MRPL50Q8N5N7 158 aaKnown RBP13.99□□□□□ -0.17
TOP3A-216ENST00000583804 XAGE3Q8WTP9 111 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 FRAT1Q92837 279 aaPredicted RBP13.99□□□□□ -0.17
TOP3A-216ENST00000583804 PHAXQ9H814 394 aaKnown RBP13.99□□□□□ -0.17
TOP3A-216ENST00000583804 A0A087WZG4 1122 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 G2E3Q7L622 706 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 TBC1D2BQ9UPU7 963 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 NUP188Q5SRE5 1749 aa13.99□□□□□ -0.17
TOP3A-216ENST00000583804 MYH14Q7Z406 1995 aaKnown RBP13.98□□□□□ -0.17
TOP3A-216ENST00000583804 COL15A1P39059 1388 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 NEFLP07196 543 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 SSFA2P28290 1259 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 RFC4P35249 363 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 KIF6Q6ZMV9 814 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 TTLL7Q6ZT98 887 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 LRP10Q7Z4F1 713 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 DZIP3Q86Y13 1208 aaKnown RBP13.98□□□□□ -0.17
TOP3A-216ENST00000583804 FLAD1Q8NFF5 587 aa13.98□□□□□ -0.17
TOP3A-216ENST00000583804 ARHGEF1Q92888 912 aaKnown RBP13.98□□□□□ -0.17
TOP3A-216ENST00000583804 FLIIQ13045 1269 aa13.97□□□□□ -0.17
TOP3A-216ENST00000583804 FKBP8Q14318 412 aa13.97□□□□□ -0.17
TOP3A-216ENST00000583804 COL23A1Q86Y22 540 aaPredicted RBP13.97□□□□□ -0.17
TOP3A-216ENST00000583804 TNNQ9UQP3 1299 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms