RNA–Protein interactions for RNA: ENST00000583708.5

UBBP4-201, Transcript of ubiquitin B pseudogene 4, humanhuman

BASIC

Gene UBBP4, Length 689 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-201ENST00000583708 AKT1S1Q96B36 256 aa12□□□□□ -0.49
UBBP4-201ENST00000583708 AK7Q96M32 723 aa12□□□□□ -0.49
UBBP4-201ENST00000583708 DBF4Q9UBU7 674 aaPredicted RBP12□□□□□ -0.49
UBBP4-201ENST00000583708 RTCBQ9Y3I0 505 aaKnown RBP12□□□□□ -0.49
UBBP4-201ENST00000583708 KDM3BQ7LBC6 1761 aa12□□□□□ -0.49
UBBP4-201ENST00000583708 UBR2Q8IWV8 1755 aa12□□□□□ -0.49
UBBP4-201ENST00000583708 CRKLP46109 303 aaKnown RBP11.99□□□□□ -0.49
UBBP4-201ENST00000583708 EXOSC9Q06265 439 aaKnown RBP11.99□□□□□ -0.49
UBBP4-201ENST00000583708 C8orf58Q8NAV2 365 aa11.99□□□□□ -0.49
UBBP4-201ENST00000583708 LINC00116Q8NCU8 138 aa11.99□□□□□ -0.49
UBBP4-201ENST00000583708 SLC16A10Q8TF71 515 aa11.99□□□□□ -0.49
UBBP4-201ENST00000583708 SPINK5Q9NQ38 1064 aaPredicted RBP11.99□□□□□ -0.49
UBBP4-201ENST00000583708 DDX21Q9NR30 783 aaKnown RBP eCLIP11.99□□□□□ -0.49
UBBP4-201ENST00000583708 HYPKQ9NX55 129 aa11.99□□□□□ -0.49
UBBP4-201ENST00000583708 USP16Q9Y5T5 823 aa11.99□□□□□ -0.49
UBBP4-201ENST00000583708 VAMP4O75379 141 aa11.98□□□□□ -0.49
UBBP4-201ENST00000583708 ALDH1L2Q3SY69 923 aa11.98□□□□□ -0.49
UBBP4-201ENST00000583708 HDGFL1Q5TGJ6 251 aa11.98□□□□□ -0.49
UBBP4-201ENST00000583708 INTS5Q6P9B9 1019 aaKnown RBP11.98□□□□□ -0.49
UBBP4-201ENST00000583708 TSR2Q969E8 191 aaKnown RBP11.98□□□□□ -0.49
UBBP4-201ENST00000583708 STK31Q9BXU1 1019 aa11.98□□□□□ -0.49
UBBP4-201ENST00000583708 TFCP2L1Q9NZI6 479 aa11.98□□□□□ -0.49
UBBP4-201ENST00000583708 C5P01031 1676 aa11.97□□□□□ -0.49
UBBP4-201ENST00000583708 EIF5P55010 431 aaKnown RBP11.97□□□□□ -0.49
UBBP4-201ENST00000583708 BRPF1P55201 1214 aaPredicted RBP11.97□□□□□ -0.49
UBBP4-201ENST00000583708 TRAPPC3LQ5T215 181 aa11.97□□□□□ -0.49
UBBP4-201ENST00000583708 CDCA7LQ96GN5 454 aa11.97□□□□□ -0.49
UBBP4-201ENST00000583708 RREB1Q92766 1687 aa11.95□□□□□ -0.5
UBBP4-201ENST00000583708 ERVV-1B6SEH8 477 aa11.95□□□□□ -0.5
UBBP4-201ENST00000583708 GNPATO15228 680 aa11.95□□□□□ -0.5
UBBP4-201ENST00000583708 A1BGP04217 495 aa11.95□□□□□ -0.5
UBBP4-201ENST00000583708 EIF2S2P20042 333 aaKnown RBP11.95□□□□□ -0.5
UBBP4-201ENST00000583708 CLEC4GQ6UXB4 293 aa11.95□□□□□ -0.5
UBBP4-201ENST00000583708 SENP3-EIF4A1A0A087X0R7 540 aa11.94□□□□□ -0.5
UBBP4-201ENST00000583708 ELL2O00472 640 aaPredicted RBP11.94□□□□□ -0.5
UBBP4-201ENST00000583708 DDX58O95786 925 aaKnown RBP11.94□□□□□ -0.5
UBBP4-201ENST00000583708 RFC4P35249 363 aa11.94□□□□□ -0.5
UBBP4-201ENST00000583708 PDIA6Q15084 440 aa11.94□□□□□ -0.5
UBBP4-201ENST00000583708 TSPYL6Q8N831 410 aa11.94□□□□□ -0.5
UBBP4-201ENST00000583708 ZBTB1Q9Y2K1 713 aa11.94□□□□□ -0.5
UBBP4-201ENST00000583708 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.93□□□□□ -0.5
UBBP4-201ENST00000583708 NBPF26B4DH59 902 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 ZPR1O75312 459 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 CANXP27824 592 aaKnown RBP11.93□□□□□ -0.5
UBBP4-201ENST00000583708 KCNQ4P56696 695 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 KRT24Q2M2I5 525 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 NBPF10Q6P3W6 841 aaKnown RBP11.93□□□□□ -0.5
UBBP4-201ENST00000583708 NLGN1Q8N2Q7 840 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 NBPF15Q8N660 670 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 NARFQ9UHQ1 456 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 ZNF652Q9Y2D9 606 aa11.93□□□□□ -0.5
UBBP4-201ENST00000583708 C4BP0C0L5 1744 aa11.92□□□□□ -0.5
UBBP4-201ENST00000583708 PRAMEF22A3QJZ6 481 aa11.92□□□□□ -0.5
UBBP4-201ENST00000583708 SLC4A2P04920 1241 aa11.92□□□□□ -0.5
UBBP4-201ENST00000583708 ZNF827Q17R98 1081 aa11.92□□□□□ -0.5
UBBP4-201ENST00000583708 HSP90AB3PQ58FF7 597 aa11.92□□□□□ -0.5
UBBP4-201ENST00000583708 KIF6Q6ZMV9 814 aa11.92□□□□□ -0.5
UBBP4-201ENST00000583708 ARHGEF1Q92888 912 aaKnown RBP11.92□□□□□ -0.5
UBBP4-201ENST00000583708 TJP1Q07157 1748 aa11.91□□□□□ -0.5
UBBP4-201ENST00000583708 TAF1LQ8IZX4 1826 aa11.91□□□□□ -0.5
UBBP4-201ENST00000583708 IPO8O15397 1037 aaKnown RBP11.91□□□□□ -0.5
UBBP4-201ENST00000583708 LRP10Q7Z4F1 713 aa11.91□□□□□ -0.5
UBBP4-201ENST00000583708 ARHGAP45Q92619 1136 aa11.91□□□□□ -0.5
UBBP4-201ENST00000583708 ANO8Q9HCE9 1232 aaPredicted RBP11.91□□□□□ -0.5
UBBP4-201ENST00000583708 CHPF2Q9P2E5 772 aa11.91□□□□□ -0.5
UBBP4-201ENST00000583708 COL5A3P25940 1745 aaPredicted RBP11.91□□□□□ -0.5
UBBP4-201ENST00000583708 COL15A1P39059 1388 aa11.91□□□□□ -0.5
UBBP4-201ENST00000583708 PTPRCP08575 1304 aa11.9□□□□□ -0.5
UBBP4-201ENST00000583708 PNPLA7Q6ZV29 1317 aa11.9□□□□□ -0.5
UBBP4-201ENST00000583708 RARSP54136 660 aaKnown RBP11.9□□□□□ -0.5
UBBP4-201ENST00000583708 NUP188Q5SRE5 1749 aa11.9□□□□□ -0.5
UBBP4-201ENST00000583708 ANKRD13DQ6ZTN6 518 aa11.9□□□□□ -0.5
UBBP4-201ENST00000583708 COPS6Q7L5N1 327 aa11.9□□□□□ -0.5
UBBP4-201ENST00000583708 DZIP3Q86Y13 1208 aaKnown RBP11.9□□□□□ -0.5
UBBP4-201ENST00000583708 COL23A1Q86Y22 540 aaPredicted RBP11.9□□□□□ -0.5
UBBP4-201ENST00000583708 PLBD2Q8NHP8 589 aa11.9□□□□□ -0.5
UBBP4-201ENST00000583708 CACNA1FO60840 1977 aa11.9□□□□□ -0.5
UBBP4-201ENST00000583708 LAMB4A4D0S4 1761 aa11.9□□□□□ -0.51
UBBP4-201ENST00000583708 MAP3K15Q6ZN16 1313 aa11.89□□□□□ -0.51
UBBP4-201ENST00000583708 KIF16BQ96L93 1317 aa11.89□□□□□ -0.51
UBBP4-201ENST00000583708 USP42Q9H9J4 1324 aaKnown RBP11.89□□□□□ -0.51
UBBP4-201ENST00000583708 MS4A1P11836 297 aa11.89□□□□□ -0.51
UBBP4-201ENST00000583708 MYL6BP14649 208 aa11.89□□□□□ -0.51
UBBP4-201ENST00000583708 TRIM28Q13263 835 aaKnown RBP11.89□□□□□ -0.51
UBBP4-201ENST00000583708 YTHDC1Q96MU7 727 aaKnown RBP11.89□□□□□ -0.51
UBBP4-201ENST00000583708 MTFR1LQ9H019 292 aa11.89□□□□□ -0.51
UBBP4-201ENST00000583708 QSER1Q2KHR3 1735 aa11.89□□□□□ -0.51
UBBP4-201ENST00000583708 CAMTA2O94983 1202 aa11.88□□□□□ -0.51
UBBP4-201ENST00000583708 FLIIQ13045 1269 aa11.88□□□□□ -0.51
UBBP4-201ENST00000583708 R3HDM1Q15032 1099 aaKnown RBP11.88□□□□□ -0.51
UBBP4-201ENST00000583708 KSR2Q6VAB6 950 aa11.88□□□□□ -0.51
UBBP4-201ENST00000583708 GIGYF2Q6Y7W6 1299 aaKnown RBP11.88□□□□□ -0.51
UBBP4-201ENST00000583708 MRPL50Q8N5N7 158 aaKnown RBP11.88□□□□□ -0.51
UBBP4-201ENST00000583708 XAGE3Q8WTP9 111 aa11.88□□□□□ -0.51
UBBP4-201ENST00000583708 SSH1Q8WYL5 1049 aa11.88□□□□□ -0.51
UBBP4-201ENST00000583708 SMC4Q9NTJ3 1288 aa11.88□□□□□ -0.51
UBBP4-201ENST00000583708 MYH14Q7Z406 1995 aaKnown RBP11.88□□□□□ -0.51
UBBP4-201ENST00000583708 IBTKQ9P2D0 1353 aaPredicted RBP11.88□□□□□ -0.51
UBBP4-201ENST00000583708 MSH5O43196 834 aa11.87□□□□□ -0.51
UBBP4-201ENST00000583708 HSP90B1P14625 803 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms