RNA–Protein interactions for RNA: ENST00000582772.1

MSI2-216, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 398 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-216	ENST00000582772	P2RX7	Q99572	595 aa	Known RBP	7.83	□□□□□ -1.16
MSI2-216	ENST00000582772	HACL1	Q9UJ83	578 aa		7.83	□□□□□ -1.16
MSI2-216	ENST00000582772	CDH23	Q9H251	3354 aa		7.83	□□□□□ -1.16
MSI2-216	ENST00000582772	NRXN2	Q9P2S2	1712 aa		7.83	□□□□□ -1.16
MSI2-216	ENST00000582772	NFAT5	O94916	1531 aa		7.83	□□□□□ -1.16
MSI2-216	ENST00000582772	ADGRB1	O14514	1584 aa		7.82	□□□□□ -1.16
MSI2-216	ENST00000582772	CSB-PGBD3	P0DP91	1061 aa		7.82	□□□□□ -1.16
MSI2-216	ENST00000582772	EPHX2	P34913	555 aa		7.82	□□□□□ -1.16
MSI2-216	ENST00000582772	BCOR	Q6W2J9	1755 aa		7.82	□□□□□ -1.16
MSI2-216	ENST00000582772	ACE	P12821	1306 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	NCOR1	O75376	2440 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	SMG6	Q86US8	1419 aa	Known RBP	7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	ITGB4	P16144	1822 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	CHRNA5	P30532	468 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	TMF1	P82094	1093 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	DEFB123	Q8N688	67 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	MTMR10	Q9NXD2	777 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	RNF186	Q9NXI6	227 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	CLEC11A	Q9Y240	323 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	PARP3	Q9Y6F1	533 aa		7.81	□□□□□ -1.16
MSI2-216	ENST00000582772	MUC6	Q6W4X9	2439 aa		7.8	□□□□□ -1.16
MSI2-216	ENST00000582772	ZNF831	Q5JPB2	1677 aa		7.8	□□□□□ -1.16
MSI2-216	ENST00000582772	TNFRSF10A	O00220	468 aa		7.8	□□□□□ -1.16
MSI2-216	ENST00000582772	NOM1	Q5C9Z4	860 aa	Known RBP	7.8	□□□□□ -1.16
MSI2-216	ENST00000582772	ZIC5	Q96T25	663 aa		7.8	□□□□□ -1.16
MSI2-216	ENST00000582772	AFDN	P55196	1824 aa	Known RBP	7.8	□□□□□ -1.16
MSI2-216	ENST00000582772	BDP1	A6H8Y1	2624 aa		7.8	□□□□□ -1.16
MSI2-216	ENST00000582772	CACNA1G	O43497	2377 aa		7.79	□□□□□ -1.16
MSI2-216	ENST00000582772	ARFGEF2	Q9Y6D5	1785 aa		7.79	□□□□□ -1.16
MSI2-216	ENST00000582772	TMEM265	A0A087WTH1	108 aa		7.79	□□□□□ -1.16
MSI2-216	ENST00000582772	PLEKHG3	A1L390	1219 aa		7.79	□□□□□ -1.16
MSI2-216	ENST00000582772	SAFB2	Q14151	953 aa	Known RBP eCLIP	7.79	□□□□□ -1.16	2e-6	■■■■□ 20
MSI2-216	ENST00000582772	COL5A3	P25940	1745 aa	Predicted RBP	7.78	□□□□□ -1.16
MSI2-216	ENST00000582772	ZBTB7C	A1YPR0	619 aa		7.78	□□□□□ -1.16
MSI2-216	ENST00000582772	TRPA1	O75762	1119 aa		7.78	□□□□□ -1.16
MSI2-216	ENST00000582772	GYS1	P13807	737 aa		7.78	□□□□□ -1.16
MSI2-216	ENST00000582772	UNC79	Q9P2D8	2635 aa		7.78	□□□□□ -1.16
MSI2-216	ENST00000582772	FAM155A	B1AL88	458 aa	Predicted RBP	7.77	□□□□□ -1.17
MSI2-216	ENST00000582772	FOXK2	Q01167	660 aa		7.77	□□□□□ -1.17
MSI2-216	ENST00000582772	NUDT16	Q96DE0	195 aa	Known RBP	7.77	□□□□□ -1.17
MSI2-216	ENST00000582772	C14orf93	Q9H972	538 aa	Known RBP	7.77	□□□□□ -1.17
MSI2-216	ENST00000582772	LTN1	O94822	1766 aa		7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	ROCK1	Q13464	1354 aa		7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	TTLL6	Q8N841	843 aa		7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	LINC00116	Q8NCU8	138 aa		7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	DDX54	Q8TDD1	881 aa	Known RBP	7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	CABP2	Q9NPB3	220 aa		7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	POGK	Q9P215	609 aa		7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	RPTOR	Q8N122	1335 aa		7.76	□□□□□ -1.17
MSI2-216	ENST00000582772	CACNA1B	Q00975	2339 aa		7.75	□□□□□ -1.17
MSI2-216	ENST00000582772	GNPAT	O15228	680 aa		7.75	□□□□□ -1.17
MSI2-216	ENST00000582772	EN2	P19622	333 aa	Predicted RBP	7.75	□□□□□ -1.17
MSI2-216	ENST00000582772	ZNF296	Q8WUU4	475 aa	Predicted RBP	7.75	□□□□□ -1.17
MSI2-216	ENST00000582772	HDAC9	Q9UKV0	1011 aa		7.75	□□□□□ -1.17
MSI2-216	ENST00000582772	USP31	Q70CQ4	1352 aa		7.74	□□□□□ -1.17
MSI2-216	ENST00000582772	USP34	Q70CQ2	3546 aa		7.74	□□□□□ -1.17
MSI2-216	ENST00000582772	TRAF5	O00463	557 aa		7.74	□□□□□ -1.17
MSI2-216	ENST00000582772	REM2	Q8IYK8	340 aa	Predicted RBP	7.74	□□□□□ -1.17
MSI2-216	ENST00000582772	KCNH5	Q8NCM2	988 aa		7.74	□□□□□ -1.17
MSI2-216	ENST00000582772	SMARCC1	Q92922	1105 aa	Predicted RBP	7.74	□□□□□ -1.17
MSI2-216	ENST00000582772	CHD8	Q9HCK8	2581 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	NLRP6	P59044	892 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772		Q7L0L9	218 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	ALYREF	Q86V81	257 aa	Known RBP	7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	ARMC5	Q96C12	935 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	TAOK3	Q9H2K8	898 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	HCN4	Q9Y3Q4	1203 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	CCDC61	Q9Y6R9	512 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	CFAP54	Q96N23	3096 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	RNF123	Q5XPI4	1314 aa		7.73	□□□□□ -1.17
MSI2-216	ENST00000582772	COL11A2	P13942	1736 aa	Predicted RBP	7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	CELF2	O95319	508 aa	Known RBP	7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	SRPK2	P78362	688 aa	Known RBP	7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	DDR1	Q08345	913 aa		7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	TRAPPC3L	Q5T215	181 aa		7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	NLRP2	Q9NX02	1062 aa		7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	ZNF541	Q9H0D2	1346 aa		7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	KMT2B	Q9UMN6	2715 aa	Predicted RBP	7.72	□□□□□ -1.17
MSI2-216	ENST00000582772	C5orf42	Q9H799	3197 aa		7.71	□□□□□ -1.18
MSI2-216	ENST00000582772	KIF23	Q02241	960 aa	Predicted RBP	7.71	□□□□□ -1.18
MSI2-216	ENST00000582772	KDM3B	Q7LBC6	1761 aa		7.71	□□□□□ -1.18
MSI2-216	ENST00000582772	CACNA1S	Q13698	1873 aa		7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	ANKRD31	Q8N7Z5	1873 aa		7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	MYH14	Q7Z406	1995 aa	Known RBP	7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	LRIT3	Q3SXY7	679 aa		7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	USP50	Q70EL3	339 aa	Predicted RBP	7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	GPC2	Q8N158	579 aa		7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	CCDC102A	Q96A19	550 aa		7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	CSRNP1	Q96S65	589 aa		7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	TTC21A	Q8NDW8	1320 aa		7.7	□□□□□ -1.18
MSI2-216	ENST00000582772	LOC102724428	A0A0B4J2F2	783 aa		7.69	□□□□□ -1.18
MSI2-216	ENST00000582772	POLRMT	O00411	1230 aa	Known RBP	7.69	□□□□□ -1.18
MSI2-216	ENST00000582772	SIK1	P57059	783 aa		7.69	□□□□□ -1.18
MSI2-216	ENST00000582772	KANK4	Q5T7N3	995 aa	Predicted RBP	7.69	□□□□□ -1.18
MSI2-216	ENST00000582772	RGMB	Q6NW40	437 aa		7.69	□□□□□ -1.18
MSI2-216	ENST00000582772	ARHGEF1	Q92888	912 aa	Known RBP	7.69	□□□□□ -1.18
MSI2-216	ENST00000582772	RTCB	Q9Y3I0	505 aa	Known RBP	7.69	□□□□□ -1.18
MSI2-216	ENST00000582772	RGS20	O76081	388 aa		7.68	□□□□□ -1.18
MSI2-216	ENST00000582772	TJAP1	Q5JTD0	557 aa		7.68	□□□□□ -1.18
MSI2-216	ENST00000582772	SYNE4	Q8N205	404 aa		7.68	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms