RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 SOS1Q07889 1333 aaPredicted RBP21.98■■□□□ 1.11
SREBF1-219ENST00000580540 UBR2Q8IWV8 1755 aa21.97■■□□□ 1.11
SREBF1-219ENST00000580540 TAF7Q15545 349 aaPredicted RBP21.97■■□□□ 1.11
SREBF1-219ENST00000580540 MIS18AQ9NYP9 233 aa21.97■■□□□ 1.11
SREBF1-219ENST00000580540 ZNF330Q9Y3S2 320 aaPredicted RBP21.97■■□□□ 1.11
SREBF1-219ENST00000580540 CICQ96RK0 1608 aaPredicted RBP21.97■■□□□ 1.11
SREBF1-219ENST00000580540 YY1P25490 414 aa21.96■■□□□ 1.11
SREBF1-219ENST00000580540 CCDC146Q8IYE0 955 aa21.96■■□□□ 1.11
SREBF1-219ENST00000580540 THUMPD2Q9BTF0 503 aaKnown RBP21.96■■□□□ 1.11
SREBF1-219ENST00000580540 PARP3Q9Y6F1 533 aa21.96■■□□□ 1.11
SREBF1-219ENST00000580540 USP42Q9H9J4 1324 aaKnown RBP21.96■■□□□ 1.11
SREBF1-219ENST00000580540 FKBP8Q14318 412 aa21.95■■□□□ 1.1
SREBF1-219ENST00000580540 USPL1Q5W0Q7 1092 aa21.95■■□□□ 1.1
SREBF1-219ENST00000580540 RIPK4P57078 832 aa21.94■■□□□ 1.1
SREBF1-219ENST00000580540 WWC3Q9ULE0 1092 aa21.94■■□□□ 1.1
SREBF1-219ENST00000580540 COL15A1P39059 1388 aa21.94■■□□□ 1.1
SREBF1-219ENST00000580540 C4AP0C0L4 1744 aa21.94■■□□□ 1.1
SREBF1-219ENST00000580540 DLG5Q8TDM6 1919 aa21.94■■□□□ 1.1
SREBF1-219ENST00000580540 PRAMEF22A3QJZ6 481 aa21.92■■□□□ 1.1
SREBF1-219ENST00000580540 A1BGP04217 495 aa21.92■■□□□ 1.1
SREBF1-219ENST00000580540 NEUROD2Q15784 382 aa21.92■■□□□ 1.1
SREBF1-219ENST00000580540 NPM2Q86SE8 214 aaKnown RBP21.92■■□□□ 1.1
SREBF1-219ENST00000580540 NARFQ9UHQ1 456 aa21.92■■□□□ 1.1
SREBF1-219ENST00000580540 RRP7AQ9Y3A4 280 aaKnown RBP21.92■■□□□ 1.1
SREBF1-219ENST00000580540 SNRPA1P09661 255 aaKnown RBP21.91■■□□□ 1.1
SREBF1-219ENST00000580540 ADAMTS8Q9UP79 889 aa21.91■■□□□ 1.1
SREBF1-219ENST00000580540 USP16Q9Y5T5 823 aa21.91■■□□□ 1.1
SREBF1-219ENST00000580540 A0A087WZG4 1122 aa21.9■■□□□ 1.1
SREBF1-219ENST00000580540 TMPOP42166 694 aaKnown RBP21.9■■□□□ 1.1
SREBF1-219ENST00000580540 EIF5P55010 431 aaKnown RBP21.9■■□□□ 1.1
SREBF1-219ENST00000580540 PNISRQ8TF01 805 aaKnown RBP21.9■■□□□ 1.1
SREBF1-219ENST00000580540 YBX3P16989 372 aaKnown RBP eCLIP21.89■■□□□ 1.09
SREBF1-219ENST00000580540 PIP4K2AP48426 406 aaPredicted RBP21.89■■□□□ 1.09
SREBF1-219ENST00000580540 DDR1Q08345 913 aa21.88■■□□□ 1.09
SREBF1-219ENST00000580540 RUNDC1Q96C34 613 aa21.88■■□□□ 1.09
SREBF1-219ENST00000580540 TBC1D2BQ9UPU7 963 aa21.88■■□□□ 1.09
SREBF1-219ENST00000580540 IL6STP40189 918 aaPredicted RBP21.87■■□□□ 1.09
SREBF1-219ENST00000580540 GRIN3BO60391 1043 aa21.86■■□□□ 1.09
SREBF1-219ENST00000580540 TM4SF1P30408 202 aa21.86■■□□□ 1.09
SREBF1-219ENST00000580540 LMOD3Q0VAK6 560 aa21.86■■□□□ 1.09
SREBF1-219ENST00000580540 BICDL1Q6ZP65 573 aa21.86■■□□□ 1.09
SREBF1-219ENST00000580540 A0A0G2JLW4 131 aa21.85■■□□□ 1.09
SREBF1-219ENST00000580540 NFIXQ14938 502 aa21.85■■□□□ 1.09
SREBF1-219ENST00000580540 BCL2L12Q9HB09 334 aa21.85■■□□□ 1.09
SREBF1-219ENST00000580540 POLRMTO00411 1230 aaKnown RBP21.84■■□□□ 1.09
SREBF1-219ENST00000580540 TSPYL4Q9UJ04 414 aa21.84■■□□□ 1.09
SREBF1-219ENST00000580540 EIF4A1P60842 406 aaKnown RBP21.83■■□□□ 1.09
SREBF1-219ENST00000580540 TGFB2P61812 414 aa21.83■■□□□ 1.09
SREBF1-219ENST00000580540 C10orf71Q711Q0 1435 aa21.82■■□□□ 1.08
SREBF1-219ENST00000580540 ANP32CO43423 234 aa21.82■■□□□ 1.08
SREBF1-219ENST00000580540 DPEP1P16444 411 aa21.82■■□□□ 1.08
SREBF1-219ENST00000580540 DZIP3Q86Y13 1208 aaKnown RBP21.82■■□□□ 1.08
SREBF1-219ENST00000580540 LAS1LQ9Y4W2 734 aaKnown RBP21.81■■□□□ 1.08
SREBF1-219ENST00000580540 PXDNLA1KZ92 1463 aa21.8■■□□□ 1.08
SREBF1-219ENST00000580540 GIGYF1O75420 1035 aaPredicted RBP21.8■■□□□ 1.08
SREBF1-219ENST00000580540 SERPINB2P05120 415 aa21.8■■□□□ 1.08
SREBF1-219ENST00000580540 CCDC184Q52MB2 194 aa21.8■■□□□ 1.08
SREBF1-219ENST00000580540 TBC1D9BQ66K14 1250 aa21.8■■□□□ 1.08
SREBF1-219ENST00000580540 UTRNP46939 3433 aa21.79■■□□□ 1.08
SREBF1-219ENST00000580540 NBPF26B4DH59 902 aa21.79■■□□□ 1.08
SREBF1-219ENST00000580540 NBPF10Q6P3W6 841 aaKnown RBP21.79■■□□□ 1.08
SREBF1-219ENST00000580540 NGEFQ8N5V2 710 aa21.79■■□□□ 1.08
SREBF1-219ENST00000580540 NBPF15Q8N660 670 aa21.79■■□□□ 1.08
SREBF1-219ENST00000580540 BCS1LQ9Y276 419 aa21.79■■□□□ 1.08
SREBF1-219ENST00000580540 KDM3BQ7LBC6 1761 aa21.79■■□□□ 1.08
SREBF1-219ENST00000580540 CHD4Q14839 1912 aa21.78■■□□□ 1.08
SREBF1-219ENST00000580540 CAMTA2O94983 1202 aa21.78■■□□□ 1.08
SREBF1-219ENST00000580540 TRIM35Q9UPQ4 493 aa21.78■■□□□ 1.08
SREBF1-219ENST00000580540 N4BP2Q86UW6 1770 aaPredicted RBP21.78■■□□□ 1.08
SREBF1-219ENST00000580540 APAF1O14727 1248 aa21.77■■□□□ 1.08
SREBF1-219ENST00000580540 KIF13BQ9NQT8 1826 aa21.77■■□□□ 1.08
SREBF1-219ENST00000580540 GOLGB1Q14789 3259 aaKnown RBP21.76■■□□□ 1.07
SREBF1-219ENST00000580540 CHRNA5P30532 468 aa21.76■■□□□ 1.07
SREBF1-219ENST00000580540 NPHP1O15259 732 aa21.75■■□□□ 1.07
SREBF1-219ENST00000580540 MYL6BP14649 208 aa21.75■■□□□ 1.07
SREBF1-219ENST00000580540 EIF2S2P20042 333 aaKnown RBP21.75■■□□□ 1.07
SREBF1-219ENST00000580540 SETDB2Q96T68 719 aa21.75■■□□□ 1.07
SREBF1-219ENST00000580540 MRS2Q9HD23 443 aa21.75■■□□□ 1.07
SREBF1-219ENST00000580540 BABAM1Q9NWV8 329 aa21.75■■□□□ 1.07
SREBF1-219ENST00000580540 PIM2Q9P1W9 311 aa21.74■■□□□ 1.07
SREBF1-219ENST00000580540 KCNA3P22001 575 aa21.73■■□□□ 1.07
SREBF1-219ENST00000580540 CCDC24Q8N4L8 307 aa21.73■■□□□ 1.07
SREBF1-219ENST00000580540 ZNF652Q9Y2D9 606 aa21.73■■□□□ 1.07
SREBF1-219ENST00000580540 AFDNP55196 1824 aaKnown RBP21.73■■□□□ 1.07
SREBF1-219ENST00000580540 SENP3-EIF4A1A0A087X0R7 540 aa21.72■■□□□ 1.07
SREBF1-219ENST00000580540 ZNF784Q8NCA9 323 aaPredicted RBP21.72■■□□□ 1.07
SREBF1-219ENST00000580540 SCN7AQ01118 1682 aa21.72■■□□□ 1.07
SREBF1-219ENST00000580540 KIAA1551Q9HCM1 1747 aa21.72■■□□□ 1.07
SREBF1-219ENST00000580540 LAMB4A4D0S4 1761 aa21.71■■□□□ 1.07
SREBF1-219ENST00000580540 CHL1O00533 1208 aa21.71■■□□□ 1.07
SREBF1-219ENST00000580540 DALRD3Q5D0E6 543 aaKnown RBP21.71■■□□□ 1.07
SREBF1-219ENST00000580540 ARHGAP27Q6ZUM4 889 aa21.71■■□□□ 1.07
SREBF1-219ENST00000580540 NECTIN2Q92692 538 aa21.71■■□□□ 1.07
SREBF1-219ENST00000580540 CARMIL3Q8ND23 1372 aa21.71■■□□□ 1.07
SREBF1-219ENST00000580540 CLEC4GQ6UXB4 293 aa21.7■■□□□ 1.06
SREBF1-219ENST00000580540 C2CD5Q86YS7 1000 aa21.7■■□□□ 1.06
SREBF1-219ENST00000580540 FAM177BA6PVY3 158 aa21.69■■□□□ 1.06
SREBF1-219ENST00000580540 KRT24Q2M2I5 525 aa21.69■■□□□ 1.06
SREBF1-219ENST00000580540 PRR5LQ6MZQ0 368 aa21.69■■□□□ 1.06
SREBF1-219ENST00000580540 KIF6Q6ZMV9 814 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms