RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 C4orf17Q53FE4 359 aa9.11□□□□□ -0.95
COPS3-216ENST00000579716 PHTF2Q8N3S3 785 aa9.11□□□□□ -0.95
COPS3-216ENST00000579716 SUV39H2Q9H5I1 410 aa9.11□□□□□ -0.95
COPS3-216ENST00000579716 CLSPNQ9HAW4 1339 aa9.1□□□□□ -0.95
COPS3-216ENST00000579716 MAP2K3P46734 347 aa9.1□□□□□ -0.95
COPS3-216ENST00000579716 CTBSQ01459 385 aa9.1□□□□□ -0.95
COPS3-216ENST00000579716 PODNQ7Z5L7 613 aa9.1□□□□□ -0.95
COPS3-216ENST00000579716 TRIM52Q96A61 297 aa9.1□□□□□ -0.95
COPS3-216ENST00000579716 MSX1P28360 303 aa9.09□□□□□ -0.95
COPS3-216ENST00000579716 AAMPQ13685 434 aa9.09□□□□□ -0.95
COPS3-216ENST00000579716 TEX2Q8IWB9 1127 aa9.09□□□□□ -0.95
COPS3-216ENST00000579716 EDARADDQ8WWZ3 215 aa9.09□□□□□ -0.95
COPS3-216ENST00000579716 RUBCNLQ9H714 662 aa9.09□□□□□ -0.95
COPS3-216ENST00000579716 BNIP3LO60238 219 aa9.08□□□□□ -0.96
COPS3-216ENST00000579716 BAG6P46379 1132 aa9.08□□□□□ -0.96
COPS3-216ENST00000579716 IRX6P78412 446 aaPredicted RBP9.08□□□□□ -0.96
COPS3-216ENST00000579716 CCDC27Q2M243 656 aa9.08□□□□□ -0.96
COPS3-216ENST00000579716 TMED8Q6PL24 325 aaPredicted RBP9.08□□□□□ -0.96
COPS3-216ENST00000579716 CCDC82Q8N4S0 544 aa9.08□□□□□ -0.96
COPS3-216ENST00000579716 PLCD4Q9BRC7 762 aa9.08□□□□□ -0.96
COPS3-216ENST00000579716 A0A1B0GTH6 734 aa9.07□□□□□ -0.96
COPS3-216ENST00000579716 SOCS7O14512 581 aa9.07□□□□□ -0.96
COPS3-216ENST00000579716 BANK1Q8NDB2 785 aa9.07□□□□□ -0.96
COPS3-216ENST00000579716 ZSCAN10Q96SZ4 725 aaPredicted RBP9.07□□□□□ -0.96
COPS3-216ENST00000579716 NSFL1CQ9UNZ2 370 aaKnown RBP9.07□□□□□ -0.96
COPS3-216ENST00000579716 ITGB7P26010 798 aa9.06□□□□□ -0.96
COPS3-216ENST00000579716 ABHD17AQ96GS6 310 aa9.06□□□□□ -0.96
COPS3-216ENST00000579716 ETNK1Q9HBU6 452 aa9.06□□□□□ -0.96
COPS3-216ENST00000579716 DNAAF2Q9NVR5 837 aaKnown RBP9.06□□□□□ -0.96
COPS3-216ENST00000579716 PRDM16Q9HAZ2 1276 aa9.05□□□□□ -0.96
COPS3-216ENST00000579716 KLF15Q9UIH9 416 aa9.05□□□□□ -0.96
COPS3-216ENST00000579716 K7ELQ4 463 aaPredicted RBP9.04□□□□□ -0.96
COPS3-216ENST00000579716 FURINP09958 794 aa9.04□□□□□ -0.96
COPS3-216ENST00000579716 PPARGC1BQ86YN6 1023 aaKnown RBP9.04□□□□□ -0.96
COPS3-216ENST00000579716 ZNF526Q8TF50 670 aaPredicted RBP9.04□□□□□ -0.96
COPS3-216ENST00000579716 KRTAP4-8Q9BYQ9 185 aa9.04□□□□□ -0.96
COPS3-216ENST00000579716 CHIC2Q9UKJ5 165 aa9.04□□□□□ -0.96
COPS3-216ENST00000579716 MKL2Q9ULH7 1088 aa9.04□□□□□ -0.96
COPS3-216ENST00000579716 ZNF295-AS1Q8N0V1 137 aa9.03□□□□□ -0.96
COPS3-216ENST00000579716 BTBD6Q96KE9 485 aa9.03□□□□□ -0.96
COPS3-216ENST00000579716 GGA1Q9UJY5 639 aa9.03□□□□□ -0.96
COPS3-216ENST00000579716 IRF5Q13568 498 aa9.02□□□□□ -0.97
COPS3-216ENST00000579716 LBRQ14739 615 aaKnown RBP9.02□□□□□ -0.97
COPS3-216ENST00000579716 CRISPLD1Q9H336 500 aa9.02□□□□□ -0.97
COPS3-216ENST00000579716 GDF2Q9UK05 429 aaPredicted RBP9.02□□□□□ -0.97
COPS3-216ENST00000579716 ATXN7L1Q9ULK2 861 aaPredicted RBP9.02□□□□□ -0.97
COPS3-216ENST00000579716 NDUFB9Q9Y6M9 179 aa9.02□□□□□ -0.97
COPS3-216ENST00000579716 FGFR3P22607 806 aa9.01□□□□□ -0.97
COPS3-216ENST00000579716 SCNN1DP51172 638 aa9.01□□□□□ -0.97
COPS3-216ENST00000579716 GOLGA6L1Q8N7Z2 621 aa9.01□□□□□ -0.97
COPS3-216ENST00000579716 PHF24Q9UPV7 400 aa9.01□□□□□ -0.97
COPS3-216ENST00000579716 C1QTNF9BB2RNN3 333 aa9□□□□□ -0.97
COPS3-216ENST00000579716 MAFGO15525 162 aa9□□□□□ -0.97
COPS3-216ENST00000579716 EPXP11678 715 aa9□□□□□ -0.97
COPS3-216ENST00000579716 ATP4AP20648 1035 aa9□□□□□ -0.97
COPS3-216ENST00000579716 TMEM214Q6NUQ4 689 aaKnown RBP9□□□□□ -0.97
COPS3-216ENST00000579716 SLCO4C1Q6ZQN7 724 aa9□□□□□ -0.97
COPS3-216ENST00000579716 CD163Q86VB7 1156 aa9□□□□□ -0.97
COPS3-216ENST00000579716 ZCCHC2Q9C0B9 1178 aaKnown RBP9□□□□□ -0.97
COPS3-216ENST00000579716 RRAGCQ9HB90 399 aa9□□□□□ -0.97
COPS3-216ENST00000579716 BMP4P12644 408 aa8.99□□□□□ -0.97
COPS3-216ENST00000579716 DGKGP49619 791 aa8.99□□□□□ -0.97
COPS3-216ENST00000579716 Q8N3U1 123 aa8.99□□□□□ -0.97
COPS3-216ENST00000579716 RHBDD1Q8TEB9 315 aa8.99□□□□□ -0.97
COPS3-216ENST00000579716 MYCP01106 439 aaPredicted RBP8.98□□□□□ -0.97
COPS3-216ENST00000579716 GNASQ5JWF2 1037 aa8.98□□□□□ -0.97
COPS3-216ENST00000579716 TBC1D2BQ9UPU7 963 aa8.98□□□□□ -0.97
COPS3-216ENST00000579716 AMOTL2Q9Y2J4 779 aa8.98□□□□□ -0.97
COPS3-216ENST00000579716 ZNF330Q9Y3S2 320 aaPredicted RBP8.98□□□□□ -0.97
COPS3-216ENST00000579716 CHRNA4P43681 627 aa8.97□□□□□ -0.97
COPS3-216ENST00000579716 GRIN2CQ14957 1233 aa8.97□□□□□ -0.97
COPS3-216ENST00000579716 ALYREFQ86V81 257 aaKnown RBP8.97□□□□□ -0.97
COPS3-216ENST00000579716 ESF1Q9H501 851 aaKnown RBP8.97□□□□□ -0.97
COPS3-216ENST00000579716 ANAPC15P60006 121 aa8.96□□□□□ -0.98
COPS3-216ENST00000579716 FLIIQ13045 1269 aa8.96□□□□□ -0.98
COPS3-216ENST00000579716 RNF135Q8IUD6 432 aa8.96□□□□□ -0.98
COPS3-216ENST00000579716 ANKRD13AQ8IZ07 590 aa8.96□□□□□ -0.98
COPS3-216ENST00000579716 USP3Q9Y6I4 520 aa8.96□□□□□ -0.98
COPS3-216ENST00000579716 NEURL1BA8MQ27 555 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 CSB-PGBD3P0DP91 1061 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 ARAFP10398 606 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 MCCP23508 829 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 USP4Q13107 963 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 HSP90AB4PQ58FF6 505 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 ESCO1Q5FWF5 840 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 EFHC2Q5JST6 749 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 FCHSD1Q86WN1 690 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 PGBD3Q8N328 593 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 PCDHGC4Q9Y5F7 938 aa8.95□□□□□ -0.98
COPS3-216ENST00000579716 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.94□□□□□ -0.98
COPS3-216ENST00000579716 INHAP05111 366 aa8.94□□□□□ -0.98
COPS3-216ENST00000579716 TNP2Q05952 138 aa8.94□□□□□ -0.98
COPS3-216ENST00000579716 TLR1Q15399 786 aa8.94□□□□□ -0.98
COPS3-216ENST00000579716 GLIPR1L2Q4G1C9 344 aa8.94□□□□□ -0.98
COPS3-216ENST00000579716 ERICH6BQ5W0A0 696 aa8.94□□□□□ -0.98
COPS3-216ENST00000579716 EXOC8Q8IYI6 725 aa8.94□□□□□ -0.98
COPS3-216ENST00000579716 IQSEC3Q9UPP2 1182 aaPredicted RBP8.94□□□□□ -0.98
COPS3-216ENST00000579716 CADPSQ9ULU8 1353 aa8.94□□□□□ -0.98
COPS3-216ENST00000579716 PLEKHD1A6NEE1 506 aa8.93□□□□□ -0.98
COPS3-216ENST00000579716 GNB5O14775 395 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms