RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 FHDC1Q9C0D6 1143 aaPredicted RBP17.84■□□□□ 0.45
CIITA-210ENST00000575513 MYH14Q7Z406 1995 aaKnown RBP17.83■□□□□ 0.44
CIITA-210ENST00000575513 MSL1Q68DK7 614 aa17.83■□□□□ 0.44
CIITA-210ENST00000575513 MRS2Q9HD23 443 aa17.83■□□□□ 0.44
CIITA-210ENST00000575513 THUMPD2Q9BTF0 503 aaKnown RBP17.82■□□□□ 0.44
CIITA-210ENST00000575513 MIS18AQ9NYP9 233 aa17.82■□□□□ 0.44
CIITA-210ENST00000575513 TRIM35Q9UPQ4 493 aa17.82■□□□□ 0.44
CIITA-210ENST00000575513 ZBTB1Q9Y2K1 713 aa17.82■□□□□ 0.44
CIITA-210ENST00000575513 DLG5Q8TDM6 1919 aa17.81■□□□□ 0.44
CIITA-210ENST00000575513 A0A087WZG4 1122 aa17.81■□□□□ 0.44
CIITA-210ENST00000575513 GYS1P13807 737 aa17.81■□□□□ 0.44
CIITA-210ENST00000575513 IL6STP40189 918 aaPredicted RBP17.81■□□□□ 0.44
CIITA-210ENST00000575513 EIF5P55010 431 aaKnown RBP17.81■□□□□ 0.44
CIITA-210ENST00000575513 NEUROD2Q15784 382 aa17.81■□□□□ 0.44
CIITA-210ENST00000575513 RRP7AQ9Y3A4 280 aaKnown RBP17.81■□□□□ 0.44
CIITA-210ENST00000575513 USP42Q9H9J4 1324 aaKnown RBP17.8■□□□□ 0.44
CIITA-210ENST00000575513 APAF1O14727 1248 aa17.8■□□□□ 0.44
CIITA-210ENST00000575513 ZPR1O75312 459 aa17.8■□□□□ 0.44
CIITA-210ENST00000575513 EIF4A1P60842 406 aaKnown RBP17.8■□□□□ 0.44
CIITA-210ENST00000575513 NCBP3Q53F19 620 aaKnown RBP17.8■□□□□ 0.44
CIITA-210ENST00000575513 NARFQ9UHQ1 456 aa17.8■□□□□ 0.44
CIITA-210ENST00000575513 CD2APQ9Y5K6 639 aa17.8■□□□□ 0.44
CIITA-210ENST00000575513 USP16Q9Y5T5 823 aa17.8■□□□□ 0.44
CIITA-210ENST00000575513 GIGYF1O75420 1035 aaPredicted RBP17.79■□□□□ 0.44
CIITA-210ENST00000575513 CANXP27824 592 aaKnown RBP17.79■□□□□ 0.44
CIITA-210ENST00000575513 TSPYL4Q9UJ04 414 aa17.79■□□□□ 0.44
CIITA-210ENST00000575513 COL15A1P39059 1388 aa17.79■□□□□ 0.44
CIITA-210ENST00000575513 CHL1O00533 1208 aa17.78■□□□□ 0.44
CIITA-210ENST00000575513 DCAF8L1A6NGE4 600 aa17.77■□□□□ 0.44
CIITA-210ENST00000575513 A1BGP04217 495 aa17.77■□□□□ 0.44
CIITA-210ENST00000575513 MMP10P09238 476 aa17.77■□□□□ 0.44
CIITA-210ENST00000575513 CALD1Q05682 793 aaKnown RBP17.77■□□□□ 0.44
CIITA-210ENST00000575513 PRAMEF22A3QJZ6 481 aa17.76■□□□□ 0.43
CIITA-210ENST00000575513 NPM2Q86SE8 214 aaKnown RBP17.76■□□□□ 0.43
CIITA-210ENST00000575513 SRP68Q9UHB9 627 aaKnown RBP17.76■□□□□ 0.43
CIITA-210ENST00000575513 CCDC27Q2M243 656 aa17.75■□□□□ 0.43
CIITA-210ENST00000575513 CFAP44Q96MT7 982 aa17.75■□□□□ 0.43
CIITA-210ENST00000575513 RGL2O15211 777 aa17.74■□□□□ 0.43
CIITA-210ENST00000575513 TM4SF1P30408 202 aa17.74■□□□□ 0.43
CIITA-210ENST00000575513 FKBP8Q14318 412 aa17.74■□□□□ 0.43
CIITA-210ENST00000575513 USPL1Q5W0Q7 1092 aa17.74■□□□□ 0.43
CIITA-210ENST00000575513 PARP3Q9Y6F1 533 aa17.74■□□□□ 0.43
CIITA-210ENST00000575513 KDM3BQ7LBC6 1761 aa17.73■□□□□ 0.43
CIITA-210ENST00000575513 ZNF853P0CG23 659 aa17.72■□□□□ 0.43
CIITA-210ENST00000575513 KLHL34Q8N239 644 aa17.72■□□□□ 0.43
CIITA-210ENST00000575513 BCL2L12Q9HB09 334 aa17.72■□□□□ 0.43
CIITA-210ENST00000575513 IFT57Q9NWB7 429 aa17.72■□□□□ 0.43
CIITA-210ENST00000575513 ERBB4Q15303 1308 aa17.72■□□□□ 0.43
CIITA-210ENST00000575513 NBPF26B4DH59 902 aa17.71■□□□□ 0.43
CIITA-210ENST00000575513 GNAI1P63096 354 aa17.71■□□□□ 0.43
CIITA-210ENST00000575513 NBPF10Q6P3W6 841 aaKnown RBP17.71■□□□□ 0.43
CIITA-210ENST00000575513 CLEC4GQ6UXB4 293 aa17.71■□□□□ 0.43
CIITA-210ENST00000575513 NGEFQ8N5V2 710 aa17.71■□□□□ 0.43
CIITA-210ENST00000575513 NBPF15Q8N660 670 aa17.71■□□□□ 0.43
CIITA-210ENST00000575513 C4AP0C0L4 1744 aa17.71■□□□□ 0.43
CIITA-210ENST00000575513 HOXB7P09629 217 aa17.7■□□□□ 0.42
CIITA-210ENST00000575513 TGFB2P61812 414 aa17.7■□□□□ 0.42
CIITA-210ENST00000575513 DIEXFQ68CQ4 756 aaKnown RBP17.7■□□□□ 0.42
CIITA-210ENST00000575513 TBC1D2BQ9UPU7 963 aa17.7■□□□□ 0.42
CIITA-210ENST00000575513 POLRMTO00411 1230 aaKnown RBP17.69■□□□□ 0.42
CIITA-210ENST00000575513 CAMTA2O94983 1202 aa17.69■□□□□ 0.42
CIITA-210ENST00000575513 NFIXQ14938 502 aa17.69■□□□□ 0.42
CIITA-210ENST00000575513 DZIP3Q86Y13 1208 aaKnown RBP17.69■□□□□ 0.42
CIITA-210ENST00000575513 NLGN2Q8NFZ4 835 aa17.69■□□□□ 0.42
CIITA-210ENST00000575513 ZNF330Q9Y3S2 320 aaPredicted RBP17.69■□□□□ 0.42
CIITA-210ENST00000575513 LAS1LQ9Y4W2 734 aaKnown RBP17.69■□□□□ 0.42
CIITA-210ENST00000575513 DDR1Q08345 913 aa17.68■□□□□ 0.42
CIITA-210ENST00000575513 WWC1Q8IX03 1113 aa17.68■□□□□ 0.42
CIITA-210ENST00000575513 CCER2I3L3R5 266 aa17.67■□□□□ 0.42
CIITA-210ENST00000575513 MBIPQ9NS73 344 aa17.67■□□□□ 0.42
CIITA-210ENST00000575513 ZNF652Q9Y2D9 606 aa17.67■□□□□ 0.42
CIITA-210ENST00000575513 ERVV-1B6SEH8 477 aa17.66■□□□□ 0.42
CIITA-210ENST00000575513 PIP4K2AP48426 406 aaPredicted RBP17.66■□□□□ 0.42
CIITA-210ENST00000575513 FAM9BQ8IZU0 186 aa17.66■□□□□ 0.42
CIITA-210ENST00000575513 IL16Q14005 1332 aa17.66■□□□□ 0.42
CIITA-210ENST00000575513 C10orf71Q711Q0 1435 aa17.65■□□□□ 0.42
CIITA-210ENST00000575513 SERPINB2P05120 415 aa17.65■□□□□ 0.42
CIITA-210ENST00000575513 CHMP4AQ9BY43 222 aa17.65■□□□□ 0.42
CIITA-210ENST00000575513 EIF2S2P20042 333 aaKnown RBP17.64■□□□□ 0.41
CIITA-210ENST00000575513 PDIA6Q15084 440 aa17.64■□□□□ 0.41
CIITA-210ENST00000575513 GPR162Q16538 588 aa17.64■□□□□ 0.41
CIITA-210ENST00000575513 TBC1D9BQ66K14 1250 aa17.64■□□□□ 0.41
CIITA-210ENST00000575513 WDR63Q8IWG1 891 aa17.64■□□□□ 0.41
CIITA-210ENST00000575513 SETDB2Q96T68 719 aa17.64■□□□□ 0.41
CIITA-210ENST00000575513 LAMB4A4D0S4 1761 aa17.63■□□□□ 0.41
CIITA-210ENST00000575513 GRIN3BO60391 1043 aa17.63■□□□□ 0.41
CIITA-210ENST00000575513 LRP10Q7Z4F1 713 aa17.63■□□□□ 0.41
CIITA-210ENST00000575513 MYL6BP14649 208 aa17.62■□□□□ 0.41
CIITA-210ENST00000575513 DUSP27Q5VZP5 1158 aa17.62■□□□□ 0.41
CIITA-210ENST00000575513 DDX21Q9NR30 783 aaKnown RBP eCLIP17.62■□□□□ 0.41
CIITA-210ENST00000575513 CARMIL3Q8ND23 1372 aa17.62■□□□□ 0.41
CIITA-210ENST00000575513 KRT24Q2M2I5 525 aa17.61■□□□□ 0.41
CIITA-210ENST00000575513 KIF6Q6ZMV9 814 aa17.61■□□□□ 0.41
CIITA-210ENST00000575513 BICDL1Q6ZP65 573 aa17.61■□□□□ 0.41
CIITA-210ENST00000575513 MAP3K15Q6ZN16 1313 aa17.61■□□□□ 0.41
CIITA-210ENST00000575513 HDGFL1Q5TGJ6 251 aa17.6■□□□□ 0.41
CIITA-210ENST00000575513 DBF4Q9UBU7 674 aaPredicted RBP17.6■□□□□ 0.41
CIITA-210ENST00000575513 PDZRN3Q9UPQ7 1066 aa17.6■□□□□ 0.41
CIITA-210ENST00000575513 SCN7AQ01118 1682 aa17.6■□□□□ 0.41
CIITA-210ENST00000575513 KIF13BQ9NQT8 1826 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms