RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 PDE4CQ08493 712 aa9.06□□□□□ -0.96
NUP88-208ENST00000574087 PRIMPOLQ96LW4 560 aa9.06□□□□□ -0.96
NUP88-208ENST00000574087 SLC35F4A4IF30 521 aa9.05□□□□□ -0.96
NUP88-208ENST00000574087 NOS2P35228 1153 aa9.05□□□□□ -0.96
NUP88-208ENST00000574087 PHKA2P46019 1235 aa9.05□□□□□ -0.96
NUP88-208ENST00000574087 PTSQ03393 145 aa9.05□□□□□ -0.96
NUP88-208ENST00000574087 ZNF787Q6DD87 383 aa9.05□□□□□ -0.96
NUP88-208ENST00000574087 L3MBTL2Q969R5 705 aa9.05□□□□□ -0.96
NUP88-208ENST00000574087 C2orf49Q9BVC5 232 aaPredicted RBP9.05□□□□□ -0.96
NUP88-208ENST00000574087 CXXC1Q9P0U4 656 aaPredicted RBP9.05□□□□□ -0.96
NUP88-208ENST00000574087 EML1O00423 815 aa9.04□□□□□ -0.96
NUP88-208ENST00000574087 PPP1R12BO60237 982 aaPredicted RBP9.04□□□□□ -0.96
NUP88-208ENST00000574087 PLA2G4AP47712 749 aa9.04□□□□□ -0.96
NUP88-208ENST00000574087 SERTM1A2A2V5 107 aa9.03□□□□□ -0.96
NUP88-208ENST00000574087 FOXO3O43524 673 aa9.03□□□□□ -0.96
NUP88-208ENST00000574087 SSFA2P28290 1259 aa9.03□□□□□ -0.96
NUP88-208ENST00000574087 HIRAP54198 1017 aaPredicted RBP9.03□□□□□ -0.96
NUP88-208ENST00000574087 SH3PXD2AQ5TCZ1 1133 aa9.03□□□□□ -0.96
NUP88-208ENST00000574087 TIMMDC1Q9NPL8 285 aa9.03□□□□□ -0.96
NUP88-208ENST00000574087 DYRK1BQ9Y463 629 aa9.03□□□□□ -0.96
NUP88-208ENST00000574087 PARP3Q9Y6F1 533 aa9.03□□□□□ -0.96
NUP88-208ENST00000574087 ATP2B4P23634 1241 aa9.02□□□□□ -0.97
NUP88-208ENST00000574087 FKBP5Q13451 457 aaPredicted RBP9.02□□□□□ -0.97
NUP88-208ENST00000574087 CHMP7Q8WUX9 453 aaPredicted RBP9.02□□□□□ -0.97
NUP88-208ENST00000574087 A0A1B0GTH6 734 aa9.01□□□□□ -0.97
NUP88-208ENST00000574087 PHLDB3Q6NSJ2 640 aa9.01□□□□□ -0.97
NUP88-208ENST00000574087 CCDC155Q8N6L0 562 aa9.01□□□□□ -0.97
NUP88-208ENST00000574087 C1orf216Q8TAB5 229 aa9.01□□□□□ -0.97
NUP88-208ENST00000574087 ZDHHC3Q9NYG2 299 aa9.01□□□□□ -0.97
NUP88-208ENST00000574087 ZNF232Q9UNY5 417 aa9.01□□□□□ -0.97
NUP88-208ENST00000574087 CHMP3Q9Y3E7 222 aa9.01□□□□□ -0.97
NUP88-208ENST00000574087 TXLNAP40222 546 aa9□□□□□ -0.97
NUP88-208ENST00000574087 TRAIPQ9BWF2 469 aa9□□□□□ -0.97
NUP88-208ENST00000574087 ATP4AP20648 1035 aa8.99□□□□□ -0.97
NUP88-208ENST00000574087 MSX1P28360 303 aa8.99□□□□□ -0.97
NUP88-208ENST00000574087 C7orf43Q8WVR3 580 aa8.99□□□□□ -0.97
NUP88-208ENST00000574087 AIDAQ96BJ3 306 aa8.99□□□□□ -0.97
NUP88-208ENST00000574087 F11P03951 625 aa8.98□□□□□ -0.97
NUP88-208ENST00000574087 NBPF1Q3BBV0 1214 aa8.98□□□□□ -0.97
NUP88-208ENST00000574087 C1orf53Q5VUE5 145 aa8.98□□□□□ -0.97
NUP88-208ENST00000574087 COL26A1Q96A83 441 aa8.98□□□□□ -0.97
NUP88-208ENST00000574087 HCN4Q9Y3Q4 1203 aa8.98□□□□□ -0.97
NUP88-208ENST00000574087 PPFIA3O75145 1194 aa8.97□□□□□ -0.97
NUP88-208ENST00000574087 GAS2L1Q99501 681 aaPredicted RBP8.97□□□□□ -0.97
NUP88-208ENST00000574087 PHACTR1Q9C0D0 580 aa8.97□□□□□ -0.97
NUP88-208ENST00000574087 NXF1Q9UBU9 619 aaKnown RBP8.97□□□□□ -0.97
NUP88-208ENST00000574087 B4GALNT3Q6L9W6 998 aa8.96□□□□□ -0.98
NUP88-208ENST00000574087 CAPN12Q6ZSI9 719 aa8.96□□□□□ -0.98
NUP88-208ENST00000574087 HOMEZQ8IX15 550 aa8.96□□□□□ -0.98
NUP88-208ENST00000574087 ALDH16A1Q8IZ83 802 aa8.96□□□□□ -0.98
NUP88-208ENST00000574087 CRISPLD1Q9H336 500 aa8.96□□□□□ -0.98
NUP88-208ENST00000574087 PTCD1O75127 700 aaKnown RBP8.95□□□□□ -0.98
NUP88-208ENST00000574087 TATP17735 454 aaPredicted RBP8.95□□□□□ -0.98
NUP88-208ENST00000574087 ITGA6P23229 1130 aa8.95□□□□□ -0.98
NUP88-208ENST00000574087 SCNN1AP37088 669 aa8.95□□□□□ -0.98
NUP88-208ENST00000574087 NPAS3Q8IXF0 933 aa8.95□□□□□ -0.98
NUP88-208ENST00000574087 VTI1AQ96AJ9 217 aa8.95□□□□□ -0.98
NUP88-208ENST00000574087 ZIC5Q96T25 663 aa8.95□□□□□ -0.98
NUP88-208ENST00000574087 MKNK1Q9BUB5 465 aa8.95□□□□□ -0.98
NUP88-208ENST00000574087 QTRT2Q9H974 415 aaKnown RBP8.95□□□□□ -0.98
NUP88-208ENST00000574087 GPAMQ9HCL2 828 aa8.95□□□□□ -0.98
NUP88-208ENST00000574087 CUEDC1Q9NWM3 386 aaPredicted RBP8.95□□□□□ -0.98
NUP88-208ENST00000574087 BRD1O95696 1058 aa8.94□□□□□ -0.98
NUP88-208ENST00000574087 THBS1P07996 1170 aa8.94□□□□□ -0.98
NUP88-208ENST00000574087 PDIA4P13667 645 aaKnown RBP8.94□□□□□ -0.98
NUP88-208ENST00000574087 MYO19Q96H55 970 aa8.94□□□□□ -0.98
NUP88-208ENST00000574087 RUBCNLQ9H714 662 aa8.94□□□□□ -0.98
NUP88-208ENST00000574087 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.94□□□□□ -0.98
NUP88-208ENST00000574087 GPC6Q9Y625 555 aaPredicted RBP8.94□□□□□ -0.98
NUP88-208ENST00000574087 DBN1Q16643 649 aa8.93□□□□□ -0.98
NUP88-208ENST00000574087 RTN1Q16799 776 aa8.93□□□□□ -0.98
NUP88-208ENST00000574087 TRIM22Q8IYM9 498 aa8.93□□□□□ -0.98
NUP88-208ENST00000574087 KLRG1Q96E93 195 aa8.93□□□□□ -0.98
NUP88-208ENST00000574087 NGLY1Q96IV0 654 aa8.93□□□□□ -0.98
NUP88-208ENST00000574087 A0A1W2PNR3 127 aa8.92□□□□□ -0.98
NUP88-208ENST00000574087 LBRQ14739 615 aaKnown RBP8.92□□□□□ -0.98
NUP88-208ENST00000574087 RIPOR1Q6ZS17 1223 aa8.92□□□□□ -0.98
NUP88-208ENST00000574087 NANOS1Q8WY41 292 aaKnown RBP8.92□□□□□ -0.98
NUP88-208ENST00000574087 GMCL1Q96IK5 515 aa8.92□□□□□ -0.98
NUP88-208ENST00000574087 SEPT3Q9UH03 358 aa8.92□□□□□ -0.98
NUP88-208ENST00000574087 H3BM21 787 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 H7C1W4 665 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 TERTO14746 1132 aaKnown RBP8.91□□□□□ -0.98
NUP88-208ENST00000574087 VEGFBP49765 207 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 UBAP2LQ14157 1087 aaKnown RBP8.91□□□□□ -0.98
NUP88-208ENST00000574087 NAA30Q147X3 362 aaPredicted RBP8.91□□□□□ -0.98
NUP88-208ENST00000574087 ARSJQ5FYB0 599 aaPredicted RBP8.91□□□□□ -0.98
NUP88-208ENST00000574087 COX20Q5RI15 118 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 PGBD3Q8N328 593 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 RHPN1Q8TCX5 695 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 SAP130Q9H0E3 1048 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 LRFN2Q9ULH4 789 aa8.91□□□□□ -0.98
NUP88-208ENST00000574087 ARID4AP29374 1257 aaPredicted RBP8.9□□□□□ -0.98
NUP88-208ENST00000574087 C16orf46Q6P387 395 aa8.9□□□□□ -0.98
NUP88-208ENST00000574087 BICDL1Q6ZP65 573 aa8.9□□□□□ -0.98
NUP88-208ENST00000574087 TXNDC2Q86VQ3 553 aa8.9□□□□□ -0.98
NUP88-208ENST00000574087 NLRP8Q86W28 1048 aa8.9□□□□□ -0.98
NUP88-208ENST00000574087 ZNF837Q96EG3 531 aaPredicted RBP8.9□□□□□ -0.98
NUP88-208ENST00000574087 NUCKS1Q9H1E3 243 aaKnown RBP8.9□□□□□ -0.98
NUP88-208ENST00000574087 EFHC2Q5JST6 749 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms