RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 RAB11FIP3O75154 756 aa18.92■□□□□ 0.62
NUP88-207ENST00000573584 MCM5P33992 734 aa18.92■□□□□ 0.62
NUP88-207ENST00000573584 TUBGCP6Q96RT7 1819 aa18.92■□□□□ 0.62
NUP88-207ENST00000573584 GADD45BO75293 160 aaPredicted RBP18.91■□□□□ 0.62
NUP88-207ENST00000573584 USP48Q86UV5 1035 aa18.91■□□□□ 0.62
NUP88-207ENST00000573584 BABAM1Q9NWV8 329 aa18.91■□□□□ 0.62
NUP88-207ENST00000573584 MAP3K5Q99683 1374 aa18.91■□□□□ 0.62
NUP88-207ENST00000573584 HOXC9P31274 260 aa18.91■□□□□ 0.62
NUP88-207ENST00000573584 XRN1Q8IZH2 1706 aaKnown RBP18.91■□□□□ 0.62
NUP88-207ENST00000573584 NUTM2GQ5VZR2 741 aa18.9■□□□□ 0.62
NUP88-207ENST00000573584 LTV1Q96GA3 475 aaPredicted RBP18.9■□□□□ 0.62
NUP88-207ENST00000573584 RHPN1Q8TCX5 695 aa18.9■□□□□ 0.62
NUP88-207ENST00000573584 PHF14O94880 888 aa18.9■□□□□ 0.62
NUP88-207ENST00000573584 EID1Q9Y6B2 187 aa18.9■□□□□ 0.62
NUP88-207ENST00000573584 SRGAP3O43295 1099 aa18.89■□□□□ 0.61
NUP88-207ENST00000573584 PI4K2BQ8TCG2 481 aa18.89■□□□□ 0.61
NUP88-207ENST00000573584 FAM208AQ9UK61 1670 aaKnown RBP18.89■□□□□ 0.61
NUP88-207ENST00000573584 PXDNLA1KZ92 1463 aa18.89■□□□□ 0.61
NUP88-207ENST00000573584 SGSM2O43147 1006 aa18.89■□□□□ 0.61
NUP88-207ENST00000573584 POLA2Q14181 598 aa18.89■□□□□ 0.61
NUP88-207ENST00000573584 PLEKHG5O94827 1062 aa18.88■□□□□ 0.61
NUP88-207ENST00000573584 RAD50Q92878 1312 aa18.88■□□□□ 0.61
NUP88-207ENST00000573584 KIF1BPQ96EK5 621 aa18.88■□□□□ 0.61
NUP88-207ENST00000573584 PDCL3Q9H2J4 239 aa18.88■□□□□ 0.61
NUP88-207ENST00000573584 EIF2S2P20042 333 aaKnown RBP18.87■□□□□ 0.61
NUP88-207ENST00000573584 CSPP1Q1MSJ5 1256 aa18.87■□□□□ 0.61
NUP88-207ENST00000573584 SNX14Q9Y5W7 946 aa18.87■□□□□ 0.61
NUP88-207ENST00000573584 LRRC37A3O60309 1634 aa18.87■□□□□ 0.61
NUP88-207ENST00000573584 PTMAP06454 111 aaKnown RBP18.87■□□□□ 0.61
NUP88-207ENST00000573584 CNTROBQ8N137 903 aa18.87■□□□□ 0.61
NUP88-207ENST00000573584 NBPF7P0C2Y1 421 aaPredicted RBP18.86■□□□□ 0.61
NUP88-207ENST00000573584 LSG1Q9H089 658 aaKnown RBP18.85■□□□□ 0.61
NUP88-207ENST00000573584 AK2P54819 239 aa18.85■□□□□ 0.61
NUP88-207ENST00000573584 CWC27Q6UX04 472 aaKnown RBP18.85■□□□□ 0.61
NUP88-207ENST00000573584 RASEFQ8IZ41 740 aa18.85■□□□□ 0.61
NUP88-207ENST00000573584 USHBP1Q8N6Y0 703 aa18.85■□□□□ 0.61
NUP88-207ENST00000573584 TTC14Q96N46 770 aa18.85■□□□□ 0.61
NUP88-207ENST00000573584 LARP6Q9BRS8 491 aaKnown RBP18.85■□□□□ 0.61
NUP88-207ENST00000573584 RPAP1Q9BWH6 1393 aaPredicted RBP18.85■□□□□ 0.61
NUP88-207ENST00000573584 LIMCH1Q9UPQ0 1083 aa18.84■□□□□ 0.61
NUP88-207ENST00000573584 TBX22Q9Y458 520 aa18.84■□□□□ 0.61
NUP88-207ENST00000573584 ZSCAN22P10073 491 aaPredicted RBP18.84■□□□□ 0.61
NUP88-207ENST00000573584 VSIG10Q8N0Z9 540 aa18.84■□□□□ 0.61
NUP88-207ENST00000573584 ABTB2Q8N961 1025 aa18.84■□□□□ 0.61
NUP88-207ENST00000573584 TMEM87AQ8NBN3 555 aa18.84■□□□□ 0.61
NUP88-207ENST00000573584 CNPY2Q9Y2B0 182 aa18.84■□□□□ 0.61
NUP88-207ENST00000573584 CACNA1FO60840 1977 aa18.83■□□□□ 0.61
NUP88-207ENST00000573584 PIK3C2AO00443 1686 aa18.83■□□□□ 0.61
NUP88-207ENST00000573584 CEBPAP49715 358 aaPredicted RBP18.83■□□□□ 0.61
NUP88-207ENST00000573584 RBM10P98175 930 aaKnown RBP18.83■□□□□ 0.61
NUP88-207ENST00000573584 FAM184AQ8NB25 1140 aa18.83■□□□□ 0.61
NUP88-207ENST00000573584 SPG7Q9UQ90 795 aa18.83■□□□□ 0.61
NUP88-207ENST00000573584 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.83■□□□□ 0.61
NUP88-207ENST00000573584 TPRNQ4KMQ1 711 aa18.83■□□□□ 0.6
NUP88-207ENST00000573584 RUFY3Q7L099 469 aa18.83■□□□□ 0.6
NUP88-207ENST00000573584 PI4KAP2A4QPH2 592 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 STX6O43752 255 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 SYT1P21579 422 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 NWD1Q149M9 1564 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 BEND3Q5T5X7 828 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 PI4KAP1Q8N8J0 262 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 DNAAF4Q8WXU2 420 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 HSP90AB4PQ58FF6 505 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 CCDC183Q5T5S1 534 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 CHPF2Q9P2E5 772 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 DIP2AQ14689 1571 aa18.82■□□□□ 0.6
NUP88-207ENST00000573584 UQCRHLA0A096LP55 91 aa18.81■□□□□ 0.6
NUP88-207ENST00000573584 UQCRHP07919 91 aa18.81■□□□□ 0.6
NUP88-207ENST00000573584 SMC3Q9UQE7 1217 aa18.81■□□□□ 0.6
NUP88-207ENST00000573584 EIF4A1P60842 406 aaKnown RBP18.81■□□□□ 0.6
NUP88-207ENST00000573584 OS9Q13438 667 aaPredicted RBP18.81■□□□□ 0.6
NUP88-207ENST00000573584 UVSSAQ2YD98 709 aa18.81■□□□□ 0.6
NUP88-207ENST00000573584 CASTP20810 708 aaKnown RBP18.8■□□□□ 0.6
NUP88-207ENST00000573584 FAM13BQ9NYF5 915 aa18.8■□□□□ 0.6
NUP88-207ENST00000573584 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.8■□□□□ 0.6
NUP88-207ENST00000573584 RGPD8O14715 1765 aaPredicted RBP18.8■□□□□ 0.6
NUP88-207ENST00000573584 GLRX3O76003 335 aaKnown RBP18.8■□□□□ 0.6
NUP88-207ENST00000573584 CPA1P15085 419 aa18.8■□□□□ 0.6
NUP88-207ENST00000573584 UBE2HP62256 183 aa18.8■□□□□ 0.6
NUP88-207ENST00000573584 C14orf37Q86TY3 774 aa18.8■□□□□ 0.6
NUP88-207ENST00000573584 LGR6Q9HBX8 967 aa18.8■□□□□ 0.6
NUP88-207ENST00000573584 DIAPH3Q9NSV4 1193 aa18.8■□□□□ 0.6
NUP88-207ENST00000573584 KIAA2012Q0VF49 1180 aa18.79■□□□□ 0.6
NUP88-207ENST00000573584 ATP6V1DQ9Y5K8 247 aa18.79■□□□□ 0.6
NUP88-207ENST00000573584 N4BP2Q86UW6 1770 aaPredicted RBP18.79■□□□□ 0.6
NUP88-207ENST00000573584 LETM1O95202 739 aaPredicted RBP18.79■□□□□ 0.6
NUP88-207ENST00000573584 F13A1P00488 732 aa18.79■□□□□ 0.6
NUP88-207ENST00000573584 TTC41PQ6P2S7 1318 aa18.79■□□□□ 0.6
NUP88-207ENST00000573584 CEMIPQ8WUJ3 1361 aa18.79■□□□□ 0.6
NUP88-207ENST00000573584 CHMP4AQ9BY43 222 aa18.78■□□□□ 0.6
NUP88-207ENST00000573584 USP25Q9UHP3 1055 aa18.78■□□□□ 0.6
NUP88-207ENST00000573584 ANXA1P04083 346 aa18.78■□□□□ 0.6
NUP88-207ENST00000573584 HOXB7P09629 217 aa18.78■□□□□ 0.6
NUP88-207ENST00000573584 RUFY2Q8WXA3 655 aa18.78■□□□□ 0.6
NUP88-207ENST00000573584 HYPKQ9NX55 129 aa18.78■□□□□ 0.6
NUP88-207ENST00000573584 USP42Q9H9J4 1324 aaKnown RBP18.77■□□□□ 0.6
NUP88-207ENST00000573584 FIBPO43427 364 aa18.77■□□□□ 0.6
NUP88-207ENST00000573584 PLPPR3Q6T4P5 718 aa18.77■□□□□ 0.6
NUP88-207ENST00000573584 CLASRPQ8N2M8 674 aaKnown RBP18.77■□□□□ 0.6
NUP88-207ENST00000573584 MPNDQ8N594 471 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms