RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 PLSCR1O15162 318 aa10.24□□□□□ -0.77
NUP88-205ENST00000572809 NSD3Q9BZ95 1437 aa10.24□□□□□ -0.77
NUP88-205ENST00000572809 PTPREP23469 700 aa10.23□□□□□ -0.77
NUP88-205ENST00000572809 R3HDM1Q15032 1099 aaKnown RBP10.23□□□□□ -0.77
NUP88-205ENST00000572809 NBPF14Q5TI25 921 aa10.23□□□□□ -0.77
NUP88-205ENST00000572809 PTF1AQ7RTS3 328 aa10.23□□□□□ -0.77
NUP88-205ENST00000572809 MRPL50Q8N5N7 158 aaKnown RBP10.23□□□□□ -0.77
NUP88-205ENST00000572809 PANK3Q9H999 370 aa10.23□□□□□ -0.77
NUP88-205ENST00000572809 CGNL1Q0VF96 1302 aa10.23□□□□□ -0.77
NUP88-205ENST00000572809 PARD3Q8TEW0 1356 aa10.23□□□□□ -0.77
NUP88-205ENST00000572809 LRRC37A3O60309 1634 aa10.22□□□□□ -0.77
NUP88-205ENST00000572809 TNS1Q9HBL0 1735 aaKnown RBP10.22□□□□□ -0.77
NUP88-205ENST00000572809 HSP90AB2PQ58FF8 381 aa10.22□□□□□ -0.77
NUP88-205ENST00000572809 NBPF6Q5VWK0 638 aa10.22□□□□□ -0.77
NUP88-205ENST00000572809 DDX54Q8TDD1 881 aaKnown RBP10.22□□□□□ -0.77
NUP88-205ENST00000572809 NBPF4Q96M43 638 aa10.22□□□□□ -0.77
NUP88-205ENST00000572809 ZBED2Q9BTP6 218 aa10.22□□□□□ -0.77
NUP88-205ENST00000572809 BCL9O00512 1426 aa10.22□□□□□ -0.77
NUP88-205ENST00000572809 MYOM1P52179 1685 aa10.22□□□□□ -0.77
NUP88-205ENST00000572809 PEAK1Q9H792 1746 aa10.21□□□□□ -0.77
NUP88-205ENST00000572809 PPM1GO15355 546 aaPredicted RBP10.21□□□□□ -0.77
NUP88-205ENST00000572809 KCNQ2O43526 872 aa10.21□□□□□ -0.77
NUP88-205ENST00000572809 FOSBP53539 338 aa10.21□□□□□ -0.77
NUP88-205ENST00000572809 ACSBG1Q96GR2 724 aa10.21□□□□□ -0.77
NUP88-205ENST00000572809 EMILIN1Q9Y6C2 1016 aa10.21□□□□□ -0.77
NUP88-205ENST00000572809 RTL1A6NKG5 1358 aa10.21□□□□□ -0.78
NUP88-205ENST00000572809 KIF24Q5T7B8 1368 aa10.21□□□□□ -0.78
NUP88-205ENST00000572809 WNK3Q9BYP7 1800 aa10.21□□□□□ -0.78
NUP88-205ENST00000572809 INSRP06213 1382 aa10.2□□□□□ -0.78
NUP88-205ENST00000572809 TNS2Q63HR2 1409 aa10.2□□□□□ -0.78
NUP88-205ENST00000572809 ZCRB1Q8TBF4 217 aaKnown RBP10.2□□□□□ -0.78
NUP88-205ENST00000572809 LARP6Q9BRS8 491 aaKnown RBP10.2□□□□□ -0.78
NUP88-205ENST00000572809 SBF2Q86WG5 1849 aa10.19□□□□□ -0.78
NUP88-205ENST00000572809 KIF20BQ96Q89 1820 aa10.19□□□□□ -0.78
NUP88-205ENST00000572809 SMG6Q86US8 1419 aaKnown RBP10.19□□□□□ -0.78
NUP88-205ENST00000572809 FLT4P35916 1363 aa10.19□□□□□ -0.78
NUP88-205ENST00000572809 TNNT2P45379 298 aaPredicted RBP10.19□□□□□ -0.78
NUP88-205ENST00000572809 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.19□□□□□ -0.78
NUP88-205ENST00000572809 USHBP1Q8N6Y0 703 aa10.19□□□□□ -0.78
NUP88-205ENST00000572809 RAPGEF4Q8WZA2 1011 aa10.19□□□□□ -0.78
NUP88-205ENST00000572809 POLKQ9UBT6 870 aa10.19□□□□□ -0.78
NUP88-205ENST00000572809 WASHC2AQ641Q2 1341 aa10.18□□□□□ -0.78
NUP88-205ENST00000572809 TATP17735 454 aaPredicted RBP10.18□□□□□ -0.78
NUP88-205ENST00000572809 TXNRD1Q16881 649 aa10.18□□□□□ -0.78
NUP88-205ENST00000572809 KNSTRNQ9Y448 316 aa10.18□□□□□ -0.78
NUP88-205ENST00000572809 FAM208AQ9UK61 1670 aaKnown RBP10.18□□□□□ -0.78
NUP88-205ENST00000572809 PRIM1P49642 420 aaKnown RBP10.16□□□□□ -0.78
NUP88-205ENST00000572809 MORC1Q86VD1 984 aa10.16□□□□□ -0.78
NUP88-205ENST00000572809 NBPF3Q9H094 633 aa10.16□□□□□ -0.78
NUP88-205ENST00000572809 RGPD2P0DJD1 1756 aa10.16□□□□□ -0.78
NUP88-205ENST00000572809 KIF7Q2M1P5 1343 aa10.15□□□□□ -0.78
NUP88-205ENST00000572809 PPP1R15BQ5SWA1 713 aa10.15□□□□□ -0.78
NUP88-205ENST00000572809 SYTL4Q96C24 671 aaPredicted RBP10.15□□□□□ -0.78
NUP88-205ENST00000572809 DDX27Q96GQ7 796 aaKnown RBP10.15□□□□□ -0.78
NUP88-205ENST00000572809 EYA1Q99502 592 aa10.15□□□□□ -0.78
NUP88-205ENST00000572809 ADAM33Q9BZ11 813 aa10.15□□□□□ -0.78
NUP88-205ENST00000572809 RREB1Q92766 1687 aa10.15□□□□□ -0.79
NUP88-205ENST00000572809 KAT6BQ8WYB5 2073 aa10.14□□□□□ -0.79
NUP88-205ENST00000572809 MAP2P11137 1827 aaKnown RBP10.14□□□□□ -0.79
NUP88-205ENST00000572809 MEGF6O75095 1541 aa10.14□□□□□ -0.79
NUP88-205ENST00000572809 MFSD10Q14728 455 aa10.14□□□□□ -0.79
NUP88-205ENST00000572809 CRISPLD2Q9H0B8 497 aa10.14□□□□□ -0.79
NUP88-205ENST00000572809 NSD2O96028 1365 aa10.14□□□□□ -0.79
NUP88-205ENST00000572809 NUP188Q5SRE5 1749 aa10.13□□□□□ -0.79
NUP88-205ENST00000572809 PER1O15534 1290 aaPredicted RBP10.13□□□□□ -0.79
NUP88-205ENST00000572809 EIF4A2Q14240 407 aaKnown RBP10.13□□□□□ -0.79
NUP88-205ENST00000572809 SLC15A2Q16348 729 aa10.13□□□□□ -0.79
NUP88-205ENST00000572809 SMYD5Q6GMV2 418 aa10.13□□□□□ -0.79
NUP88-205ENST00000572809 ZDHHC16Q969W1 377 aa10.13□□□□□ -0.79
NUP88-205ENST00000572809 ANO8Q9HCE9 1232 aaPredicted RBP10.13□□□□□ -0.79
NUP88-205ENST00000572809 STK32BQ9NY57 414 aa10.13□□□□□ -0.79
NUP88-205ENST00000572809 PCDH11XQ9BZA7 1347 aa10.12□□□□□ -0.79
NUP88-205ENST00000572809 PCDH11YQ9BZA8 1340 aa10.12□□□□□ -0.79
NUP88-205ENST00000572809 RGPD3A6NKT7 1758 aaPredicted RBP10.12□□□□□ -0.79
NUP88-205ENST00000572809 RGPD4Q7Z3J3 1758 aa10.12□□□□□ -0.79
NUP88-205ENST00000572809 SPON1Q9HCB6 807 aa10.12□□□□□ -0.79
NUP88-205ENST00000572809 SPG7Q9UQ90 795 aa10.12□□□□□ -0.79
NUP88-205ENST00000572809 NHSQ6T4R5 1651 aa10.12□□□□□ -0.79
NUP88-205ENST00000572809 CYP27B1O15528 508 aa10.11□□□□□ -0.79
NUP88-205ENST00000572809 EVI5O60447 810 aa10.11□□□□□ -0.79
NUP88-205ENST00000572809 SLC27A3Q5K4L6 730 aa10.11□□□□□ -0.79
NUP88-205ENST00000572809 Q6ZNB5 142 aa10.11□□□□□ -0.79
NUP88-205ENST00000572809 LRRC4BQ9NT99 713 aa10.11□□□□□ -0.79
NUP88-205ENST00000572809 MPRIPQ6WCQ1 1025 aa10.1□□□□□ -0.79
NUP88-205ENST00000572809 ARIH1Q9Y4X5 557 aaPredicted RBP10.1□□□□□ -0.79
NUP88-205ENST00000572809 ANKRD26Q9UPS8 1709 aa10.1□□□□□ -0.79
NUP88-205ENST00000572809 LRP5O75197 1615 aa10.09□□□□□ -0.79
NUP88-205ENST00000572809 CC2D1BQ5T0F9 858 aaKnown RBP10.09□□□□□ -0.79
NUP88-205ENST00000572809 IFNL2Q8IZJ0 200 aa10.09□□□□□ -0.79
NUP88-205ENST00000572809 PDGFDQ9GZP0 370 aaPredicted RBP10.09□□□□□ -0.79
NUP88-205ENST00000572809 BTAF1O14981 1849 aa10.09□□□□□ -0.79
NUP88-205ENST00000572809 NCAPD2Q15021 1401 aa10.08□□□□□ -0.8
NUP88-205ENST00000572809 TESPA1A2RU30 521 aaPredicted RBP10.08□□□□□ -0.8
NUP88-205ENST00000572809 SEMA3EO15041 775 aa10.08□□□□□ -0.8
NUP88-205ENST00000572809 ITGBL1O95965 494 aaPredicted RBP10.08□□□□□ -0.8
NUP88-205ENST00000572809 MTHFSP49914 203 aa10.08□□□□□ -0.8
NUP88-205ENST00000572809 KCNQ4P56696 695 aa10.08□□□□□ -0.8
NUP88-205ENST00000572809 ANKK1Q8NFD2 765 aa10.08□□□□□ -0.8
NUP88-205ENST00000572809 IGSF1Q8N6C5 1336 aa10.07□□□□□ -0.8
NUP88-205ENST00000572809 SHANK3Q9BYB0 1731 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms