RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CCNL1Q9UK58 526 aaPredicted RBP12.12□□□□□ -0.47
VPS35-211ENST00000569950 USP16Q9Y5T5 823 aa12.12□□□□□ -0.47
VPS35-211ENST00000569950 CASZ1Q86V15 1759 aa12.12□□□□□ -0.47
VPS35-211ENST00000569950 CACNA1FO60840 1977 aa12.11□□□□□ -0.47
VPS35-211ENST00000569950 INTS5Q6P9B9 1019 aaKnown RBP12.11□□□□□ -0.47
VPS35-211ENST00000569950 AKT1S1Q96B36 256 aa12.11□□□□□ -0.47
VPS35-211ENST00000569950 RBM42Q9BTD8 480 aaKnown RBP12.11□□□□□ -0.47
VPS35-211ENST00000569950 LAS1LQ9Y4W2 734 aaKnown RBP12.11□□□□□ -0.47
VPS35-211ENST00000569950 NBPF26B4DH59 902 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 E9PSI1 815 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 ATP6V1AP38606 617 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 EXOSC9Q06265 439 aaKnown RBP12.1□□□□□ -0.47
VPS35-211ENST00000569950 PDIA6Q15084 440 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 NBPF14Q5TI25 921 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 NBPF10Q6P3W6 841 aaKnown RBP12.1□□□□□ -0.47
VPS35-211ENST00000569950 TTC5Q8N0Z6 440 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 NBPF15Q8N660 670 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 COL24A1Q17RW2 1714 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 CNTNAP4Q9C0A0 1308 aa12.1□□□□□ -0.47
VPS35-211ENST00000569950 SNRPA1P09661 255 aaKnown RBP12.09□□□□□ -0.47
VPS35-211ENST00000569950 SMIM5Q71RC9 77 aa12.09□□□□□ -0.47
VPS35-211ENST00000569950 BCORQ6W2J9 1755 aa12.09□□□□□ -0.47
VPS35-211ENST00000569950 SCN7AQ01118 1682 aa12.08□□□□□ -0.48
VPS35-211ENST00000569950 VAMP4O75379 141 aa12.08□□□□□ -0.48
VPS35-211ENST00000569950 CRKLP46109 303 aaKnown RBP12.08□□□□□ -0.48
VPS35-211ENST00000569950 SF3B2Q13435 895 aaKnown RBP12.08□□□□□ -0.48
VPS35-211ENST00000569950 ELL2O00472 640 aaPredicted RBP12.07□□□□□ -0.48
VPS35-211ENST00000569950 A1BGP04217 495 aa12.07□□□□□ -0.48
VPS35-211ENST00000569950 HOXB7P09629 217 aa12.07□□□□□ -0.48
VPS35-211ENST00000569950 PIP4K2AP48426 406 aaPredicted RBP12.07□□□□□ -0.48
VPS35-211ENST00000569950 PROSER3Q2NL68 480 aa12.07□□□□□ -0.48
VPS35-211ENST00000569950 RC3H1Q5TC82 1133 aaKnown RBP12.07□□□□□ -0.48
VPS35-211ENST00000569950 YTHDC1Q96MU7 727 aaKnown RBP12.07□□□□□ -0.48
VPS35-211ENST00000569950 MYH16Q9H6N6 1097 aa12.07□□□□□ -0.48
VPS35-211ENST00000569950 ZBTB1Q9Y2K1 713 aa12.07□□□□□ -0.48
VPS35-211ENST00000569950 PDGFDQ9GZP0 370 aaPredicted RBP12.06□□□□□ -0.48
VPS35-211ENST00000569950 SOS1Q07889 1333 aaPredicted RBP12.06□□□□□ -0.48
VPS35-211ENST00000569950 PNPLA7Q6ZV29 1317 aa12.06□□□□□ -0.48
VPS35-211ENST00000569950 NUP98P52948 1817 aa12.05□□□□□ -0.48
VPS35-211ENST00000569950 SRCAPQ6ZRS2 3230 aa12.05□□□□□ -0.48
VPS35-211ENST00000569950 EIF5P55010 431 aaKnown RBP12.05□□□□□ -0.48
VPS35-211ENST00000569950 SLC15A2Q16348 729 aa12.05□□□□□ -0.48
VPS35-211ENST00000569950 TWISTNBQ3B726 338 aaPredicted RBP12.05□□□□□ -0.48
VPS35-211ENST00000569950 CCDC87Q9NVE4 849 aa12.05□□□□□ -0.48
VPS35-211ENST00000569950 ARFGEF2Q9Y6D5 1785 aa12.05□□□□□ -0.48
VPS35-211ENST00000569950 RPS6KA4O75676 772 aa12.04□□□□□ -0.48
VPS35-211ENST00000569950 ANXA1P04083 346 aa12.04□□□□□ -0.48
VPS35-211ENST00000569950 TEX13AQ9BXU3 409 aaPredicted RBP12.04□□□□□ -0.48
VPS35-211ENST00000569950 ANKRD36CQ5JPF3 1778 aa12.03□□□□□ -0.48
VPS35-211ENST00000569950 NECTIN2Q92692 538 aa12.03□□□□□ -0.48
VPS35-211ENST00000569950 CHPF2Q9P2E5 772 aa12.03□□□□□ -0.48
VPS35-211ENST00000569950 ERBB4Q15303 1308 aa12.03□□□□□ -0.48
VPS35-211ENST00000569950 TCERG1O14776 1098 aaKnown RBP12.02□□□□□ -0.49
VPS35-211ENST00000569950 GNPATO15228 680 aa12.02□□□□□ -0.49
VPS35-211ENST00000569950 STARD3NLO95772 234 aa12.02□□□□□ -0.49
VPS35-211ENST00000569950 EIF2S2P20042 333 aaKnown RBP12.02□□□□□ -0.49
VPS35-211ENST00000569950 IL6STP40189 918 aaPredicted RBP12.02□□□□□ -0.49
VPS35-211ENST00000569950 HDGFL1Q5TGJ6 251 aa12.02□□□□□ -0.49
VPS35-211ENST00000569950 PPP4R3CPQ6ZMV5 832 aa12.02□□□□□ -0.49
VPS35-211ENST00000569950 G2E3Q7L622 706 aa12.02□□□□□ -0.49
VPS35-211ENST00000569950 COL23A1Q86Y22 540 aaPredicted RBP12.02□□□□□ -0.49
VPS35-211ENST00000569950 COL15A1P39059 1388 aa12.02□□□□□ -0.49
VPS35-211ENST00000569950 N4BP2Q86UW6 1770 aaPredicted RBP12.02□□□□□ -0.49
VPS35-211ENST00000569950 SSH1Q8WYL5 1049 aa12.01□□□□□ -0.49
VPS35-211ENST00000569950 BCL2L12Q9HB09 334 aa12.01□□□□□ -0.49
VPS35-211ENST00000569950 DDX21Q9NR30 783 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS35-211ENST00000569950 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12□□□□□ -0.49
VPS35-211ENST00000569950 CANXP27824 592 aaKnown RBP12□□□□□ -0.49
VPS35-211ENST00000569950 SSFA2P28290 1259 aa12□□□□□ -0.49
VPS35-211ENST00000569950 TTLL7Q6ZT98 887 aa12□□□□□ -0.49
VPS35-211ENST00000569950 ARHGEF1Q92888 912 aaKnown RBP12□□□□□ -0.49
VPS35-211ENST00000569950 PHAXQ9H814 394 aaKnown RBP12□□□□□ -0.49
VPS35-211ENST00000569950 CT47B1P0C2W7 299 aaPredicted RBP11.99□□□□□ -0.49
VPS35-211ENST00000569950 RARSP54136 660 aaKnown RBP11.99□□□□□ -0.49
VPS35-211ENST00000569950 R3HDM1Q15032 1099 aaKnown RBP11.99□□□□□ -0.49
VPS35-211ENST00000569950 MRPL50Q8N5N7 158 aaKnown RBP11.99□□□□□ -0.49
VPS35-211ENST00000569950 AK7Q96M32 723 aa11.99□□□□□ -0.49
VPS35-211ENST00000569950 STK32BQ9NY57 414 aa11.99□□□□□ -0.49
VPS35-211ENST00000569950 USP42Q9H9J4 1324 aaKnown RBP11.99□□□□□ -0.49
VPS35-211ENST00000569950 NRXN2Q9P2S2 1712 aa11.99□□□□□ -0.49
VPS35-211ENST00000569950 AFDNP55196 1824 aaKnown RBP11.99□□□□□ -0.49
VPS35-211ENST00000569950 ADCY9O60503 1353 aa11.98□□□□□ -0.49
VPS35-211ENST00000569950 PSDA5PKW4 1024 aaPredicted RBP11.98□□□□□ -0.49
VPS35-211ENST00000569950 CAMTA2O94983 1202 aa11.98□□□□□ -0.49
VPS35-211ENST00000569950 MYL6BP14649 208 aa11.98□□□□□ -0.49
VPS35-211ENST00000569950 BRPF1P55201 1214 aaPredicted RBP11.98□□□□□ -0.49
VPS35-211ENST00000569950 DBF4Q9UBU7 674 aaPredicted RBP11.98□□□□□ -0.49
VPS35-211ENST00000569950 SRP68Q9UHB9 627 aaKnown RBP11.98□□□□□ -0.49
VPS35-211ENST00000569950 RTCBQ9Y3I0 505 aaKnown RBP11.98□□□□□ -0.49
VPS35-211ENST00000569950 PHF14O94880 888 aa11.97□□□□□ -0.49
VPS35-211ENST00000569950 CCDC30Q5VVM6 783 aa11.97□□□□□ -0.49
VPS35-211ENST00000569950 XAGE3Q8WTP9 111 aa11.97□□□□□ -0.49
VPS35-211ENST00000569950 ZNF428Q96B54 188 aa11.97□□□□□ -0.49
VPS35-211ENST00000569950 TFCP2L1Q9NZI6 479 aa11.97□□□□□ -0.49
VPS35-211ENST00000569950 NARFQ9UHQ1 456 aa11.97□□□□□ -0.49
VPS35-211ENST00000569950 TBC1D2BQ9UPU7 963 aa11.97□□□□□ -0.49
VPS35-211ENST00000569950 BCAR3O75815 825 aa11.96□□□□□ -0.49
VPS35-211ENST00000569950 SLC4A2P04920 1241 aa11.96□□□□□ -0.49
VPS35-211ENST00000569950 GYS1P13807 737 aa11.96□□□□□ -0.49
VPS35-211ENST00000569950 HLFQ16534 295 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 145.7 ms