RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-219ENST00000569225 KDM3BQ7LBC6 1761 aa11.8□□□□□ -0.52
CHD9-219ENST00000569225 C5P01031 1676 aa11.79□□□□□ -0.52
CHD9-219ENST00000569225 R3HDM1Q15032 1099 aaKnown RBP11.79□□□□□ -0.52
CHD9-219ENST00000569225 ZBED9Q6R2W3 1325 aa11.79□□□□□ -0.52
CHD9-219ENST00000569225 CICQ96RK0 1608 aaPredicted RBP11.79□□□□□ -0.52
CHD9-219ENST00000569225 ERBB4Q15303 1308 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 RPS6KA4O75676 772 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 ADRA2BP18089 450 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 SSFA2P28290 1259 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 DUSP27Q5VZP5 1158 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 INTS5Q6P9B9 1019 aaKnown RBP11.78□□□□□ -0.52
CHD9-219ENST00000569225 USP16Q9Y5T5 823 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 PRAMEF22A3QJZ6 481 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 C4BP0C0L5 1744 aa11.78□□□□□ -0.52
CHD9-219ENST00000569225 A0A087WZG4 1122 aa11.77□□□□□ -0.53
CHD9-219ENST00000569225 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.77□□□□□ -0.53
CHD9-219ENST00000569225 CANXP27824 592 aaKnown RBP11.77□□□□□ -0.53
CHD9-219ENST00000569225 SLFN5Q08AF3 891 aa11.77□□□□□ -0.53
CHD9-219ENST00000569225 TRAPPC3LQ5T215 181 aa11.77□□□□□ -0.53
CHD9-219ENST00000569225 HDGFL1Q5TGJ6 251 aa11.77□□□□□ -0.53
CHD9-219ENST00000569225 SPINK5Q9NQ38 1064 aaPredicted RBP11.77□□□□□ -0.53
CHD9-219ENST00000569225 TJP1Q07157 1748 aa11.77□□□□□ -0.53
CHD9-219ENST00000569225 PSDA5PKW4 1024 aaPredicted RBP11.76□□□□□ -0.53
CHD9-219ENST00000569225 MSH5O43196 834 aa11.76□□□□□ -0.53
CHD9-219ENST00000569225 PHF14O94880 888 aa11.76□□□□□ -0.53
CHD9-219ENST00000569225 EIF2S2P20042 333 aaKnown RBP11.76□□□□□ -0.53
CHD9-219ENST00000569225 IL6STP40189 918 aaPredicted RBP11.76□□□□□ -0.53
CHD9-219ENST00000569225 KRT24Q2M2I5 525 aa11.76□□□□□ -0.53
CHD9-219ENST00000569225 C8orf58Q8NAV2 365 aa11.76□□□□□ -0.53
CHD9-219ENST00000569225 ZBTB1Q9Y2K1 713 aa11.76□□□□□ -0.53
CHD9-219ENST00000569225 PNPLA7Q6ZV29 1317 aa11.76□□□□□ -0.53
CHD9-219ENST00000569225 A1BGP04217 495 aa11.76□□□□□ -0.53
CHD9-219ENST00000569225 EXOSC9Q06265 439 aaKnown RBP11.76□□□□□ -0.53
CHD9-219ENST00000569225 TWISTNBQ3B726 338 aaPredicted RBP11.76□□□□□ -0.53
CHD9-219ENST00000569225 ELL2O00472 640 aaPredicted RBP11.75□□□□□ -0.53
CHD9-219ENST00000569225 RFC4P35249 363 aa11.75□□□□□ -0.53
CHD9-219ENST00000569225 CDCA7LQ96GN5 454 aa11.75□□□□□ -0.53
CHD9-219ENST00000569225 ZNF330Q9Y3S2 320 aaPredicted RBP11.75□□□□□ -0.53
CHD9-219ENST00000569225 EIF5P55010 431 aaKnown RBP11.74□□□□□ -0.53
CHD9-219ENST00000569225 CCDC30Q5VVM6 783 aa11.74□□□□□ -0.53
CHD9-219ENST00000569225 SLC16A10Q8TF71 515 aa11.74□□□□□ -0.53
CHD9-219ENST00000569225 COL5A3P25940 1745 aaPredicted RBP11.74□□□□□ -0.53
CHD9-219ENST00000569225 COL15A1P39059 1388 aa11.74□□□□□ -0.53
CHD9-219ENST00000569225 COL23A1Q86Y22 540 aaPredicted RBP11.74□□□□□ -0.53
CHD9-219ENST00000569225 TRMT2AQ8IZ69 625 aaKnown RBP11.74□□□□□ -0.53
CHD9-219ENST00000569225 STK31Q9BXU1 1019 aa11.74□□□□□ -0.53
CHD9-219ENST00000569225 DBF4Q9UBU7 674 aaPredicted RBP11.74□□□□□ -0.53
CHD9-219ENST00000569225 NBPF26B4DH59 902 aa11.73□□□□□ -0.53
CHD9-219ENST00000569225 ZPR1O75312 459 aa11.73□□□□□ -0.53
CHD9-219ENST00000569225 NBPF10Q6P3W6 841 aaKnown RBP11.73□□□□□ -0.53
CHD9-219ENST00000569225 NBPF15Q8N660 670 aa11.73□□□□□ -0.53
CHD9-219ENST00000569225 TSPYL6Q8N831 410 aa11.73□□□□□ -0.53
CHD9-219ENST00000569225 NECTIN2Q92692 538 aa11.73□□□□□ -0.53
CHD9-219ENST00000569225 ARHGEF1Q92888 912 aaKnown RBP11.73□□□□□ -0.53
CHD9-219ENST00000569225 DDX21Q9NR30 783 aaKnown RBP eCLIP11.73□□□□□ -0.53
CHD9-219ENST00000569225 TAF1LQ8IZX4 1826 aa11.73□□□□□ -0.53
CHD9-219ENST00000569225 CT47B1P0C2W7 299 aaPredicted RBP11.72□□□□□ -0.53
CHD9-219ENST00000569225 MYL6BP14649 208 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 AMIGO3Q86WK7 504 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 ARXQ96QS3 562 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 HYPKQ9NX55 129 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 CHPF2Q9P2E5 772 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 LAMB4A4D0S4 1761 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 VAMP4O75379 141 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 PIP4K2AP48426 406 aaPredicted RBP11.72□□□□□ -0.53
CHD9-219ENST00000569225 KIF6Q6ZMV9 814 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 ZNF428Q96B54 188 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 YTHDC1Q96MU7 727 aaKnown RBP11.72□□□□□ -0.53
CHD9-219ENST00000569225 NARFQ9UHQ1 456 aa11.72□□□□□ -0.53
CHD9-219ENST00000569225 SMIM5Q71RC9 77 aa11.71□□□□□ -0.53
CHD9-219ENST00000569225 DZIP3Q86Y13 1208 aaKnown RBP11.71□□□□□ -0.53
CHD9-219ENST00000569225 MTFR1LQ9H019 292 aa11.71□□□□□ -0.53
CHD9-219ENST00000569225 USP42Q9H9J4 1324 aaKnown RBP11.71□□□□□ -0.54
CHD9-219ENST00000569225 RGL2O15211 777 aa11.7□□□□□ -0.54
CHD9-219ENST00000569225 PDIA6Q15084 440 aa11.7□□□□□ -0.54
CHD9-219ENST00000569225 NLGN1Q8N2Q7 840 aa11.7□□□□□ -0.54
CHD9-219ENST00000569225 ZBTB7AO95365 584 aa11.7□□□□□ -0.54
CHD9-219ENST00000569225 PDGFDQ9GZP0 370 aaPredicted RBP11.7□□□□□ -0.54
CHD9-219ENST00000569225 TBC1D2BQ9UPU7 963 aa11.7□□□□□ -0.54
CHD9-219ENST00000569225 ZNF652Q9Y2D9 606 aa11.7□□□□□ -0.54
CHD9-219ENST00000569225 QSER1Q2KHR3 1735 aa11.69□□□□□ -0.54
CHD9-219ENST00000569225 PROSER3Q2NL68 480 aa11.69□□□□□ -0.54
CHD9-219ENST00000569225 USPL1Q5W0Q7 1092 aa11.69□□□□□ -0.54
CHD9-219ENST00000569225 SPON1Q9HCB6 807 aa11.69□□□□□ -0.54
CHD9-219ENST00000569225 UBR3Q6ZT12 1888 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 DDX58O95786 925 aaKnown RBP11.68□□□□□ -0.54
CHD9-219ENST00000569225 ANXA1P04083 346 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 SLC4A2P04920 1241 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 GYS1P13807 737 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 POLD1P28340 1107 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 XAGE3Q8WTP9 111 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 SRP68Q9UHB9 627 aaKnown RBP11.68□□□□□ -0.54
CHD9-219ENST00000569225 ERVV-1B6SEH8 477 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 CAMTA2O94983 1202 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 AIMP1Q12904 312 aaKnown RBP11.68□□□□□ -0.54
CHD9-219ENST00000569225 CLEC4GQ6UXB4 293 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 COPS6Q7L5N1 327 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 LRP10Q7Z4F1 713 aa11.68□□□□□ -0.54
CHD9-219ENST00000569225 MAP3K15Q6ZN16 1313 aa11.67□□□□□ -0.54
CHD9-219ENST00000569225 MYH14Q7Z406 1995 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms