RNA–Protein interactions for RNA: ENST00000568877.5

COMMD4-224, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 770 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-224ENST00000568877 HOXB7P09629 217 aa21.68■■□□□ 1.06
COMMD4-224ENST00000568877 CRKLP46109 303 aaKnown RBP21.68■■□□□ 1.06
COMMD4-224ENST00000568877 SLC15A2Q16348 729 aa21.68■■□□□ 1.06
COMMD4-224ENST00000568877 DUSP27Q5VZP5 1158 aa21.68■■□□□ 1.06
COMMD4-224ENST00000568877 TRMT2AQ8IZ69 625 aaKnown RBP21.68■■□□□ 1.06
COMMD4-224ENST00000568877 AK7Q96M32 723 aa21.68■■□□□ 1.06
COMMD4-224ENST00000568877 C4BP0C0L5 1744 aa21.68■■□□□ 1.06
COMMD4-224ENST00000568877 COL5A3P25940 1745 aaPredicted RBP21.68■■□□□ 1.06
COMMD4-224ENST00000568877 ELL2O00472 640 aaPredicted RBP21.67■■□□□ 1.06
COMMD4-224ENST00000568877 INTS5Q6P9B9 1019 aaKnown RBP21.67■■□□□ 1.06
COMMD4-224ENST00000568877 CCDC87Q9NVE4 849 aa21.67■■□□□ 1.06
COMMD4-224ENST00000568877 EXOSC9Q06265 439 aaKnown RBP21.66■■□□□ 1.06
COMMD4-224ENST00000568877 TSPYL6Q8N831 410 aa21.66■■□□□ 1.06
COMMD4-224ENST00000568877 YTHDC1Q96MU7 727 aaKnown RBP21.66■■□□□ 1.06
COMMD4-224ENST00000568877 SOS1Q07889 1333 aaPredicted RBP21.65■■□□□ 1.06
COMMD4-224ENST00000568877 GNPATO15228 680 aa21.65■■□□□ 1.06
COMMD4-224ENST00000568877 EIF2S2P20042 333 aaKnown RBP21.65■■□□□ 1.06
COMMD4-224ENST00000568877 TFCP2L1Q9NZI6 479 aa21.65■■□□□ 1.06
COMMD4-224ENST00000568877 A1BGP04217 495 aa21.64■■□□□ 1.05
COMMD4-224ENST00000568877 TWISTNBQ3B726 338 aaPredicted RBP21.64■■□□□ 1.05
COMMD4-224ENST00000568877 ZBTB1Q9Y2K1 713 aa21.64■■□□□ 1.05
COMMD4-224ENST00000568877 RPS6KA4O75676 772 aa21.63■■□□□ 1.05
COMMD4-224ENST00000568877 HDGFL1Q5TGJ6 251 aa21.63■■□□□ 1.05
COMMD4-224ENST00000568877 RTCBQ9Y3I0 505 aaKnown RBP21.63■■□□□ 1.05
COMMD4-224ENST00000568877 LAMB4A4D0S4 1761 aa21.62■■□□□ 1.05
COMMD4-224ENST00000568877 CANXP27824 592 aaKnown RBP21.62■■□□□ 1.05
COMMD4-224ENST00000568877 NECTIN2Q92692 538 aa21.62■■□□□ 1.05
COMMD4-224ENST00000568877 SSFA2P28290 1259 aa21.61■■□□□ 1.05
COMMD4-224ENST00000568877 R3HDM1Q15032 1099 aaKnown RBP21.61■■□□□ 1.05
COMMD4-224ENST00000568877 AMIGO3Q86WK7 504 aa21.61■■□□□ 1.05
COMMD4-224ENST00000568877 CHMP4AQ9BY43 222 aa21.61■■□□□ 1.05
COMMD4-224ENST00000568877 ERBB4Q15303 1308 aa21.6■■□□□ 1.05
COMMD4-224ENST00000568877 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.6■■□□□ 1.05
COMMD4-224ENST00000568877 NBPF26B4DH59 902 aa21.6■■□□□ 1.05
COMMD4-224ENST00000568877 VAMP4O75379 141 aa21.6■■□□□ 1.05
COMMD4-224ENST00000568877 PIP4K2AP48426 406 aaPredicted RBP21.6■■□□□ 1.05
COMMD4-224ENST00000568877 NBPF10Q6P3W6 841 aaKnown RBP21.6■■□□□ 1.05
COMMD4-224ENST00000568877 SMIM5Q71RC9 77 aa21.6■■□□□ 1.05
COMMD4-224ENST00000568877 NBPF15Q8N660 670 aa21.6■■□□□ 1.05
COMMD4-224ENST00000568877 MYH14Q7Z406 1995 aaKnown RBP21.59■■□□□ 1.05
COMMD4-224ENST00000568877 PHF14O94880 888 aa21.59■■□□□ 1.05
COMMD4-224ENST00000568877 IL6STP40189 918 aaPredicted RBP21.59■■□□□ 1.05
COMMD4-224ENST00000568877 TRAPPC3LQ5T215 181 aa21.59■■□□□ 1.05
COMMD4-224ENST00000568877 FLAD1Q8NFF5 587 aa21.59■■□□□ 1.05
COMMD4-224ENST00000568877 PNPLA7Q6ZV29 1317 aa21.58■■□□□ 1.05
COMMD4-224ENST00000568877 ADRA2BP18089 450 aa21.58■■□□□ 1.05
COMMD4-224ENST00000568877 EIF5P55010 431 aaKnown RBP21.58■■□□□ 1.05
COMMD4-224ENST00000568877 CCDC30Q5VVM6 783 aa21.58■■□□□ 1.05
COMMD4-224ENST00000568877 PSDA5PKW4 1024 aaPredicted RBP21.57■■□□□ 1.04
COMMD4-224ENST00000568877 PDIA6Q15084 440 aa21.57■■□□□ 1.04
COMMD4-224ENST00000568877 COL23A1Q86Y22 540 aaPredicted RBP21.57■■□□□ 1.04
COMMD4-224ENST00000568877 UBR3Q6ZT12 1888 aa21.56■■□□□ 1.04
COMMD4-224ENST00000568877 MYL6BP14649 208 aa21.56■■□□□ 1.04
COMMD4-224ENST00000568877 NPM2Q86SE8 214 aaKnown RBP21.56■■□□□ 1.04
COMMD4-224ENST00000568877 ARHGEF1Q92888 912 aaKnown RBP21.56■■□□□ 1.04
COMMD4-224ENST00000568877 DDX21Q9NR30 783 aaKnown RBP eCLIP21.56■■□□□ 1.04
COMMD4-224ENST00000568877 CHPF2Q9P2E5 772 aa21.56■■□□□ 1.04
COMMD4-224ENST00000568877 DBF4Q9UBU7 674 aaPredicted RBP21.56■■□□□ 1.04
COMMD4-224ENST00000568877 ZNF330Q9Y3S2 320 aaPredicted RBP21.56■■□□□ 1.04
COMMD4-224ENST00000568877 PROSER3Q2NL68 480 aa21.55■■□□□ 1.04
COMMD4-224ENST00000568877 COL15A1P39059 1388 aa21.55■■□□□ 1.04
COMMD4-224ENST00000568877 A0A087WZG4 1122 aa21.54■■□□□ 1.04
COMMD4-224ENST00000568877 MSH5O43196 834 aa21.54■■□□□ 1.04
COMMD4-224ENST00000568877 ANXA1P04083 346 aa21.54■■□□□ 1.04
COMMD4-224ENST00000568877 RFC4P35249 363 aa21.54■■□□□ 1.04
COMMD4-224ENST00000568877 PDGFDQ9GZP0 370 aaPredicted RBP21.54■■□□□ 1.04
COMMD4-224ENST00000568877 TUBGCP6Q96RT7 1819 aa21.54■■□□□ 1.04
COMMD4-224ENST00000568877 QSER1Q2KHR3 1735 aa21.54■■□□□ 1.04
COMMD4-224ENST00000568877 CT47B1P0C2W7 299 aaPredicted RBP21.53■■□□□ 1.04
COMMD4-224ENST00000568877 LRP10Q7Z4F1 713 aa21.53■■□□□ 1.04
COMMD4-224ENST00000568877 STK31Q9BXU1 1019 aa21.53■■□□□ 1.04
COMMD4-224ENST00000568877 TCERG1O14776 1098 aaKnown RBP21.52■■□□□ 1.04
COMMD4-224ENST00000568877 HYPKQ9NX55 129 aa21.52■■□□□ 1.04
COMMD4-224ENST00000568877 ZNF428Q96B54 188 aa21.51■■□□□ 1.03
COMMD4-224ENST00000568877 ARXQ96QS3 562 aa21.51■■□□□ 1.03
COMMD4-224ENST00000568877 TBC1D2BQ9UPU7 963 aa21.51■■□□□ 1.03
COMMD4-224ENST00000568877 DZIP3Q86Y13 1208 aaKnown RBP21.5■■□□□ 1.03
COMMD4-224ENST00000568877 NARFQ9UHQ1 456 aa21.5■■□□□ 1.03
COMMD4-224ENST00000568877 USP42Q9H9J4 1324 aaKnown RBP21.5■■□□□ 1.03
COMMD4-224ENST00000568877 ZPR1O75312 459 aa21.49■■□□□ 1.03
COMMD4-224ENST00000568877 SLC4A2P04920 1241 aa21.49■■□□□ 1.03
COMMD4-224ENST00000568877 COPS6Q7L5N1 327 aa21.49■■□□□ 1.03
COMMD4-224ENST00000568877 SLC16A10Q8TF71 515 aa21.49■■□□□ 1.03
COMMD4-224ENST00000568877 XAGE3Q8WTP9 111 aa21.49■■□□□ 1.03
COMMD4-224ENST00000568877 SRP68Q9UHB9 627 aaKnown RBP21.49■■□□□ 1.03
COMMD4-224ENST00000568877 USPL1Q5W0Q7 1092 aa21.48■■□□□ 1.03
COMMD4-224ENST00000568877 TTLL7Q6ZT98 887 aa21.48■■□□□ 1.03
COMMD4-224ENST00000568877 CASZ1Q86V15 1759 aa21.47■■□□□ 1.03
COMMD4-224ENST00000568877 AIMP1Q12904 312 aaKnown RBP21.47■■□□□ 1.03
COMMD4-224ENST00000568877 KIF6Q6ZMV9 814 aa21.47■■□□□ 1.03
COMMD4-224ENST00000568877 PHAXQ9H814 394 aaKnown RBP21.47■■□□□ 1.03
COMMD4-224ENST00000568877 CAMTA2O94983 1202 aa21.46■■□□□ 1.03
COMMD4-224ENST00000568877 GYS1P13807 737 aa21.46■■□□□ 1.03
COMMD4-224ENST00000568877 ALDH1L2Q3SY69 923 aa21.46■■□□□ 1.03
COMMD4-224ENST00000568877 SSH1Q8WYL5 1049 aa21.46■■□□□ 1.03
COMMD4-224ENST00000568877 C4AP0C0L4 1744 aa21.46■■□□□ 1.03
COMMD4-224ENST00000568877 ZBTB7AO95365 584 aa21.45■■□□□ 1.02
COMMD4-224ENST00000568877 G2E3Q7L622 706 aa21.45■■□□□ 1.02
COMMD4-224ENST00000568877 MAP3K15Q6ZN16 1313 aa21.45■■□□□ 1.02
COMMD4-224ENST00000568877 ERVV-1B6SEH8 477 aa21.44■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms