RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 COL25A1Q9BXS0 654 aaPredicted RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 CNTNAP3Q9BZ76 1288 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 NUCKS1Q9H1E3 243 aaKnown RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 SCHIP1Q9P0W5 487 aaPredicted RBP5.09□□□□□ -1.59
VPS35-208ENST00000568612 CHMP3Q9Y3E7 222 aa5.09□□□□□ -1.59
VPS35-208ENST00000568612 TATP17735 454 aaPredicted RBP5.08□□□□□ -1.6
VPS35-208ENST00000568612 SEC13P55735 322 aa5.08□□□□□ -1.6
VPS35-208ENST00000568612 INSM1Q01101 510 aaPredicted RBP5.08□□□□□ -1.6
VPS35-208ENST00000568612 DPYDQ12882 1025 aa5.08□□□□□ -1.6
VPS35-208ENST00000568612 MTFR1Q15390 333 aa5.08□□□□□ -1.6
VPS35-208ENST00000568612 ARSJQ5FYB0 599 aaPredicted RBP5.08□□□□□ -1.6
VPS35-208ENST00000568612 SIX5Q8N196 739 aa5.08□□□□□ -1.6
VPS35-208ENST00000568612 CHMP7Q8WUX9 453 aaPredicted RBP5.08□□□□□ -1.6
VPS35-208ENST00000568612 NANOS1Q8WY41 292 aaKnown RBP5.08□□□□□ -1.6
VPS35-208ENST00000568612 TRERF1Q96PN7 1200 aa5.08□□□□□ -1.6
VPS35-208ENST00000568612 TSPAN10Q9H1Z9 355 aaPredicted RBP5.08□□□□□ -1.6
VPS35-208ENST00000568612 SERPINA10Q9UK55 444 aa5.08□□□□□ -1.6
VPS35-208ENST00000568612 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP5.07□□□□□ -1.6
VPS35-208ENST00000568612 FAM196BA6NMK8 535 aa5.07□□□□□ -1.6
VPS35-208ENST00000568612 WIPF1O43516 503 aa5.07□□□□□ -1.6
VPS35-208ENST00000568612 PTK7Q13308 1070 aa5.07□□□□□ -1.6
VPS35-208ENST00000568612 EFHC2Q5JST6 749 aa5.07□□□□□ -1.6
VPS35-208ENST00000568612 BICDL1Q6ZP65 573 aa5.07□□□□□ -1.6
VPS35-208ENST00000568612 ANKMY2Q8IV38 441 aa5.07□□□□□ -1.6
VPS35-208ENST00000568612 IQSEC3Q9UPP2 1182 aaPredicted RBP5.07□□□□□ -1.6
VPS35-208ENST00000568612 GJA3Q9Y6H8 435 aa5.07□□□□□ -1.6
VPS35-208ENST00000568612 SERTM1A2A2V5 107 aa5.06□□□□□ -1.6
VPS35-208ENST00000568612 PPP1R12BO60237 982 aaPredicted RBP5.06□□□□□ -1.6
VPS35-208ENST00000568612 NOS2P35228 1153 aa5.06□□□□□ -1.6
VPS35-208ENST00000568612 RNFT1Q5M7Z0 435 aa5.06□□□□□ -1.6
VPS35-208ENST00000568612 FAM200AQ8TCP9 573 aa5.06□□□□□ -1.6
VPS35-208ENST00000568612 L3MBTL2Q969R5 705 aa5.06□□□□□ -1.6
VPS35-208ENST00000568612 GMCL1Q96IK5 515 aa5.06□□□□□ -1.6
VPS35-208ENST00000568612 M0R2N6 131 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 TXLNAP40222 546 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 EPHA4P54764 986 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 FOXK2Q01167 660 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 SH3PXD2AQ5TCZ1 1133 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 CCDC82Q8N4S0 544 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 ZSCAN1Q8NBB4 408 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 ZDHHC1Q8WTX9 485 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 SCG3Q8WXD2 468 aaKnown RBP5.05□□□□□ -1.6
VPS35-208ENST00000568612 NGLY1Q96IV0 654 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 NEUROD4Q9HD90 331 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 NOVA2Q9UNW9 492 aaKnown RBP5.05□□□□□ -1.6
VPS35-208ENST00000568612 HCN4Q9Y3Q4 1203 aa5.05□□□□□ -1.6
VPS35-208ENST00000568612 SUPT5HO00267 1087 aaKnown RBP5.04□□□□□ -1.6
VPS35-208ENST00000568612 DKK1O94907 266 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 ATP4AP20648 1035 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 PSMA6P60900 246 aaKnown RBP5.04□□□□□ -1.6
VPS35-208ENST00000568612 KRT76Q01546 638 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 TEAD4Q15561 434 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 GAS2L2Q8NHY3 880 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 C1orf216Q8TAB5 229 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 RHPN1Q8TCX5 695 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 ARID3AQ99856 593 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 ZDHHC3Q9NYG2 299 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 PHF24Q9UPV7 400 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 ATAD2Q6PL18 1390 aa5.04□□□□□ -1.6
VPS35-208ENST00000568612 A0A1W2PNR3 127 aa5.03□□□□□ -1.6
VPS35-208ENST00000568612 CENPBP07199 599 aaPredicted RBP5.03□□□□□ -1.6
VPS35-208ENST00000568612 MX2P20592 715 aa5.03□□□□□ -1.6
VPS35-208ENST00000568612 LBRQ14739 615 aaKnown RBP5.03□□□□□ -1.6
VPS35-208ENST00000568612 ZNF295-AS1Q8N0V1 137 aa5.03□□□□□ -1.6
VPS35-208ENST00000568612 VTI1AQ96AJ9 217 aa5.03□□□□□ -1.6
VPS35-208ENST00000568612 ABHD17AQ96GS6 310 aa5.03□□□□□ -1.6
VPS35-208ENST00000568612 CRISPLD1Q9H336 500 aa5.03□□□□□ -1.6
VPS35-208ENST00000568612 DCDC2BA2VCK2 349 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 EML1O00423 815 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 KHNYNO15037 678 aaKnown RBP5.02□□□□□ -1.61
VPS35-208ENST00000568612 ATXN7O15265 892 aaPredicted RBP5.02□□□□□ -1.61
VPS35-208ENST00000568612 ADAMTS2O95450 1211 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 THBS1P07996 1170 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 GAS6Q14393 721 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 FIGNL1Q6PIW4 674 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 LRRC69Q6ZNQ3 347 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 PBXIP1Q96AQ6 731 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 ARXQ96QS3 562 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 ZIC5Q96T25 663 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 ZCCHC2Q9C0B9 1178 aaKnown RBP5.02□□□□□ -1.61
VPS35-208ENST00000568612 PHACTR1Q9C0D0 580 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 C1orf115Q9H7X2 142 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 MBIPQ9NS73 344 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 TIMELESSQ9UNS1 1208 aa5.02□□□□□ -1.61
VPS35-208ENST00000568612 NSFL1CQ9UNZ2 370 aaKnown RBP5.02□□□□□ -1.61
VPS35-208ENST00000568612 FAM181BA6NEQ2 426 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 C21orf2O43822 256 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 NLRP8Q86W28 1048 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 SVOPQ8N4V2 548 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 STK32AQ8WU08 396 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 CFHR5Q9BXR6 569 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 ATXN7L1Q9ULK2 861 aaPredicted RBP5.01□□□□□ -1.61
VPS35-208ENST00000568612 PCDHGC4Q9Y5F7 938 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 IGF1RP08069 1367 aa5.01□□□□□ -1.61
VPS35-208ENST00000568612 BNIP3LO60238 219 aa5□□□□□ -1.61
VPS35-208ENST00000568612 PRMT3O60678 531 aa5□□□□□ -1.61
VPS35-208ENST00000568612 BMP4P12644 408 aa5□□□□□ -1.61
VPS35-208ENST00000568612 FGFR3P22607 806 aa5□□□□□ -1.61
VPS35-208ENST00000568612 IGFBP4P22692 258 aa5□□□□□ -1.61
VPS35-208ENST00000568612 MAP3K10Q02779 954 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms