RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MAPK8IP3Q9UPT6 1336 aa19.9■□□□□ 0.78
VPS39-210ENST00000568357 TJP1Q07157 1748 aa19.9■□□□□ 0.78
VPS39-210ENST00000568357 FMNL2Q96PY5 1086 aa19.89■□□□□ 0.77
VPS39-210ENST00000568357 MIS18AQ9NYP9 233 aa19.89■□□□□ 0.77
VPS39-210ENST00000568357 WWC3Q9ULE0 1092 aa19.89■□□□□ 0.77
VPS39-210ENST00000568357 HEG1Q9ULI3 1381 aa19.89■□□□□ 0.77
VPS39-210ENST00000568357 ADAMTS8Q9UP79 889 aa19.89■□□□□ 0.77
VPS39-210ENST00000568357 VIRMAQ69YN4 1812 aaKnown RBP19.88■□□□□ 0.77
VPS39-210ENST00000568357 WDR90Q96KV7 1748 aa19.88■□□□□ 0.77
VPS39-210ENST00000568357 TAF7Q15545 349 aaPredicted RBP19.88■□□□□ 0.77
VPS39-210ENST00000568357 CCDC146Q8IYE0 955 aa19.88■□□□□ 0.77
VPS39-210ENST00000568357 THUMPD2Q9BTF0 503 aaKnown RBP19.88■□□□□ 0.77
VPS39-210ENST00000568357 ZBTB1Q9Y2K1 713 aa19.88■□□□□ 0.77
VPS39-210ENST00000568357 CD2APQ9Y5K6 639 aa19.88■□□□□ 0.77
VPS39-210ENST00000568357 MYH14Q7Z406 1995 aaKnown RBP19.88■□□□□ 0.77
VPS39-210ENST00000568357 GYS1P13807 737 aa19.87■□□□□ 0.77
VPS39-210ENST00000568357 NLGN1Q8N2Q7 840 aa19.87■□□□□ 0.77
VPS39-210ENST00000568357 SRP68Q9UHB9 627 aaKnown RBP19.87■□□□□ 0.77
VPS39-210ENST00000568357 CICQ96RK0 1608 aaPredicted RBP19.87■□□□□ 0.77
VPS39-210ENST00000568357 SIPA1L3O60292 1781 aaPredicted RBP19.86■□□□□ 0.77
VPS39-210ENST00000568357 SOS1Q07889 1333 aaPredicted RBP19.86■□□□□ 0.77
VPS39-210ENST00000568357 STARD3NLO95772 234 aa19.86■□□□□ 0.77
VPS39-210ENST00000568357 RIPK4P57078 832 aa19.86■□□□□ 0.77
VPS39-210ENST00000568357 WDR43Q15061 677 aaKnown RBP eCLIP19.86■□□□□ 0.77
VPS39-210ENST00000568357 TEX13AQ9BXU3 409 aaPredicted RBP19.86■□□□□ 0.77
VPS39-210ENST00000568357 MMP10P09238 476 aa19.85■□□□□ 0.77
VPS39-210ENST00000568357 CANXP27824 592 aaKnown RBP19.85■□□□□ 0.77
VPS39-210ENST00000568357 TMPOP42166 694 aaKnown RBP19.85■□□□□ 0.77
VPS39-210ENST00000568357 APLP1P51693 650 aa19.85■□□□□ 0.77
VPS39-210ENST00000568357 PRAMEF22A3QJZ6 481 aa19.84■□□□□ 0.77
VPS39-210ENST00000568357 CCDC184Q52MB2 194 aa19.84■□□□□ 0.77
VPS39-210ENST00000568357 DNAJC5GQ8N7S2 189 aa19.84■□□□□ 0.77
VPS39-210ENST00000568357 RRP7AQ9Y3A4 280 aaKnown RBP19.84■□□□□ 0.77
VPS39-210ENST00000568357 USP16Q9Y5T5 823 aa19.84■□□□□ 0.77
VPS39-210ENST00000568357 UBR2Q8IWV8 1755 aa19.84■□□□□ 0.77
VPS39-210ENST00000568357 USP42Q9H9J4 1324 aaKnown RBP19.83■□□□□ 0.77
VPS39-210ENST00000568357 A1BGP04217 495 aa19.83■□□□□ 0.77
VPS39-210ENST00000568357 FKBP8Q14318 412 aa19.83■□□□□ 0.77
VPS39-210ENST00000568357 RUNDC1Q96C34 613 aa19.83■□□□□ 0.77
VPS39-210ENST00000568357 EIF5P55010 431 aaKnown RBP19.82■□□□□ 0.76
VPS39-210ENST00000568357 CAPN15O75808 1086 aa19.81■□□□□ 0.76
VPS39-210ENST00000568357 SNRPA1P09661 255 aaKnown RBP19.81■□□□□ 0.76
VPS39-210ENST00000568357 NEUROD2Q15784 382 aa19.81■□□□□ 0.76
VPS39-210ENST00000568357 USPL1Q5W0Q7 1092 aa19.81■□□□□ 0.76
VPS39-210ENST00000568357 NARFQ9UHQ1 456 aa19.81■□□□□ 0.76
VPS39-210ENST00000568357 ZPR1O75312 459 aa19.8■□□□□ 0.76
VPS39-210ENST00000568357 PNISRQ8TF01 805 aaKnown RBP19.8■□□□□ 0.76
VPS39-210ENST00000568357 COL15A1P39059 1388 aa19.8■□□□□ 0.76
VPS39-210ENST00000568357 KIAA1551Q9HCM1 1747 aa19.79■□□□□ 0.76
VPS39-210ENST00000568357 COL13A1Q5TAT6 717 aaPredicted RBP19.79■□□□□ 0.76
VPS39-210ENST00000568357 BCL2L12Q9HB09 334 aa19.79■□□□□ 0.76
VPS39-210ENST00000568357 TM4SF1P30408 202 aa19.78■□□□□ 0.76
VPS39-210ENST00000568357 TRIM35Q9UPQ4 493 aa19.78■□□□□ 0.76
VPS39-210ENST00000568357 ANP32CO43423 234 aa19.77■□□□□ 0.76
VPS39-210ENST00000568357 IL6STP40189 918 aaPredicted RBP19.77■□□□□ 0.76
VPS39-210ENST00000568357 PIP4K2AP48426 406 aaPredicted RBP19.77■□□□□ 0.76
VPS39-210ENST00000568357 EIF4A1P60842 406 aaKnown RBP19.77■□□□□ 0.76
VPS39-210ENST00000568357 DDR1Q08345 913 aa19.77■□□□□ 0.76
VPS39-210ENST00000568357 PARP3Q9Y6F1 533 aa19.77■□□□□ 0.76
VPS39-210ENST00000568357 DLG5Q8TDM6 1919 aa19.76■□□□□ 0.75
VPS39-210ENST00000568357 LMOD3Q0VAK6 560 aa19.76■□□□□ 0.75
VPS39-210ENST00000568357 TBC1D2BQ9UPU7 963 aa19.76■□□□□ 0.75
VPS39-210ENST00000568357 ZNF330Q9Y3S2 320 aaPredicted RBP19.76■□□□□ 0.75
VPS39-210ENST00000568357 C4AP0C0L4 1744 aa19.76■□□□□ 0.75
VPS39-210ENST00000568357 A0A087WZG4 1122 aa19.75■□□□□ 0.75
VPS39-210ENST00000568357 TOMM70O94826 608 aa19.75■□□□□ 0.75
VPS39-210ENST00000568357 N4BP2Q86UW6 1770 aaPredicted RBP19.75■□□□□ 0.75
VPS39-210ENST00000568357 NBPF26B4DH59 902 aa19.74■□□□□ 0.75
VPS39-210ENST00000568357 APAF1O14727 1248 aa19.74■□□□□ 0.75
VPS39-210ENST00000568357 HTRA3P83110 453 aa19.74■□□□□ 0.75
VPS39-210ENST00000568357 NFIXQ14938 502 aa19.74■□□□□ 0.75
VPS39-210ENST00000568357 NBPF10Q6P3W6 841 aaKnown RBP19.74■□□□□ 0.75
VPS39-210ENST00000568357 NBPF15Q8N660 670 aa19.74■□□□□ 0.75
VPS39-210ENST00000568357 TSPYL4Q9UJ04 414 aa19.74■□□□□ 0.75
VPS39-210ENST00000568357 KIF13BQ9NQT8 1826 aa19.74■□□□□ 0.75
VPS39-210ENST00000568357 POLRMTO00411 1230 aaKnown RBP19.73■□□□□ 0.75
VPS39-210ENST00000568357 BABAM1Q9NWV8 329 aa19.72■□□□□ 0.75
VPS39-210ENST00000568357 CHL1O00533 1208 aa19.71■□□□□ 0.75
VPS39-210ENST00000568357 NMRK2Q9NPI5 230 aa19.71■□□□□ 0.75
VPS39-210ENST00000568357 A0A0G2JLW4 131 aa19.7■□□□□ 0.74
VPS39-210ENST00000568357 CAMTA2O94983 1202 aa19.7■□□□□ 0.74
VPS39-210ENST00000568357 TGFB2P61812 414 aa19.7■□□□□ 0.74
VPS39-210ENST00000568357 NPM2Q86SE8 214 aaKnown RBP19.7■□□□□ 0.74
VPS39-210ENST00000568357 MRS2Q9HD23 443 aa19.7■□□□□ 0.74
VPS39-210ENST00000568357 PXDNLA1KZ92 1463 aa19.7■□□□□ 0.74
VPS39-210ENST00000568357 C10orf71Q711Q0 1435 aa19.69■□□□□ 0.74
VPS39-210ENST00000568357 TBC1D9BQ66K14 1250 aa19.69■□□□□ 0.74
VPS39-210ENST00000568357 BICDL1Q6ZP65 573 aa19.69■□□□□ 0.74
VPS39-210ENST00000568357 DZIP3Q86Y13 1208 aaKnown RBP19.69■□□□□ 0.74
VPS39-210ENST00000568357 KLRG1Q96E93 195 aa19.69■□□□□ 0.74
VPS39-210ENST00000568357 LAS1LQ9Y4W2 734 aaKnown RBP19.69■□□□□ 0.74
VPS39-210ENST00000568357 SERPINB2P05120 415 aa19.68■□□□□ 0.74
VPS39-210ENST00000568357 DPEP1P16444 411 aa19.68■□□□□ 0.74
VPS39-210ENST00000568357 TNS4Q8IZW8 715 aa19.68■□□□□ 0.74
VPS39-210ENST00000568357 JMYQ8N9B5 988 aa19.68■□□□□ 0.74
VPS39-210ENST00000568357 BRCA1P38398 1863 aaKnown RBP19.68■□□□□ 0.74
VPS39-210ENST00000568357 KDM3BQ7LBC6 1761 aa19.67■□□□□ 0.74
VPS39-210ENST00000568357 PRELPP51888 382 aa19.67■□□□□ 0.74
VPS39-210ENST00000568357 KCNA3P22001 575 aa19.66■□□□□ 0.74
VPS39-210ENST00000568357 KRT24Q2M2I5 525 aa19.65■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms