RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 GRIN3BO60391 1043 aa24.7■■□□□ 1.54
CLN3-227ENST00000567495 WDR43Q15061 677 aaKnown RBP eCLIP24.7■■□□□ 1.54
CLN3-227ENST00000567495 SRP68Q9UHB9 627 aaKnown RBP24.7■■□□□ 1.54
CLN3-227ENST00000567495 NARFQ9UHQ1 456 aa24.7■■□□□ 1.54
CLN3-227ENST00000567495 KCNQ3O43525 872 aa24.69■■□□□ 1.54
CLN3-227ENST00000567495 SNRPA1P09661 255 aaKnown RBP24.69■■□□□ 1.54
CLN3-227ENST00000567495 CANXP27824 592 aaKnown RBP24.69■■□□□ 1.54
CLN3-227ENST00000567495 FKBP8Q14318 412 aa24.69■■□□□ 1.54
CLN3-227ENST00000567495 PELP1Q8IZL8 1130 aaKnown RBP24.69■■□□□ 1.54
CLN3-227ENST00000567495 UBR2Q8IWV8 1755 aa24.69■■□□□ 1.54
CLN3-227ENST00000567495 COL15A1P39059 1388 aa24.68■■□□□ 1.54
CLN3-227ENST00000567495 EIF5P55010 431 aaKnown RBP24.68■■□□□ 1.54
CLN3-227ENST00000567495 VIRMAQ69YN4 1812 aaKnown RBP24.68■■□□□ 1.54
CLN3-227ENST00000567495 IL6STP40189 918 aaPredicted RBP24.67■■□□□ 1.54
CLN3-227ENST00000567495 LMOD3Q0VAK6 560 aa24.67■■□□□ 1.54
CLN3-227ENST00000567495 NPM2Q86SE8 214 aaKnown RBP24.67■■□□□ 1.54
CLN3-227ENST00000567495 SIPA1L3O60292 1781 aaPredicted RBP24.67■■□□□ 1.54
CLN3-227ENST00000567495 ZNF316A6NFI3 1004 aaPredicted RBP24.66■■□□□ 1.54
CLN3-227ENST00000567495 TGFB2P61812 414 aa24.66■■□□□ 1.54
CLN3-227ENST00000567495 USPL1Q5W0Q7 1092 aa24.66■■□□□ 1.54
CLN3-227ENST00000567495 TM4SF1P30408 202 aa24.64■■□□□ 1.54
CLN3-227ENST00000567495 RIPK4P57078 832 aa24.64■■□□□ 1.54
CLN3-227ENST00000567495 TMPOP42166 694 aaKnown RBP24.63■■□□□ 1.53
CLN3-227ENST00000567495 RUNDC1Q96C34 613 aa24.63■■□□□ 1.53
CLN3-227ENST00000567495 A1BGP04217 495 aa24.62■■□□□ 1.53
CLN3-227ENST00000567495 YBX3P16989 372 aaKnown RBP eCLIP24.62■■□□□ 1.53
CLN3-227ENST00000567495 USP16Q9Y5T5 823 aa24.62■■□□□ 1.53
CLN3-227ENST00000567495 C10orf71Q711Q0 1435 aa24.61■■□□□ 1.53
CLN3-227ENST00000567495 DDR1Q08345 913 aa24.61■■□□□ 1.53
CLN3-227ENST00000567495 BABAM1Q9NWV8 329 aa24.61■■□□□ 1.53
CLN3-227ENST00000567495 MIS18AQ9NYP9 233 aa24.61■■□□□ 1.53
CLN3-227ENST00000567495 ADAMTS8Q9UP79 889 aa24.61■■□□□ 1.53
CLN3-227ENST00000567495 THUMPD2Q9BTF0 503 aaKnown RBP24.6■■□□□ 1.53
CLN3-227ENST00000567495 C4AP0C0L4 1744 aa24.6■■□□□ 1.53
CLN3-227ENST00000567495 POLRMTO00411 1230 aaKnown RBP24.59■■□□□ 1.53
CLN3-227ENST00000567495 NFIXQ14938 502 aa24.59■■□□□ 1.53
CLN3-227ENST00000567495 ZNF330Q9Y3S2 320 aaPredicted RBP24.59■■□□□ 1.53
CLN3-227ENST00000567495 BCL2L12Q9HB09 334 aa24.58■■□□□ 1.53
CLN3-227ENST00000567495 UTRNP46939 3433 aa24.58■■□□□ 1.52
CLN3-227ENST00000567495 EIF4A1P60842 406 aaKnown RBP24.57■■□□□ 1.52
CLN3-227ENST00000567495 CCDC146Q8IYE0 955 aa24.57■■□□□ 1.52
CLN3-227ENST00000567495 PRAMEF22A3QJZ6 481 aa24.56■■□□□ 1.52
CLN3-227ENST00000567495 GIGYF1O75420 1035 aaPredicted RBP24.56■■□□□ 1.52
CLN3-227ENST00000567495 TBC1D2BQ9UPU7 963 aa24.56■■□□□ 1.52
CLN3-227ENST00000567495 PXDNLA1KZ92 1463 aa24.55■■□□□ 1.52
CLN3-227ENST00000567495 A0A0G2JLW4 131 aa24.54■■□□□ 1.52
CLN3-227ENST00000567495 RGL2O15211 777 aa24.54■■□□□ 1.52
CLN3-227ENST00000567495 DZIP3Q86Y13 1208 aaKnown RBP24.54■■□□□ 1.52
CLN3-227ENST00000567495 TSPYL4Q9UJ04 414 aa24.54■■□□□ 1.52
CLN3-227ENST00000567495 GOLGB1Q14789 3259 aaKnown RBP24.53■■□□□ 1.52
CLN3-227ENST00000567495 CAMTA2O94983 1202 aa24.53■■□□□ 1.52
CLN3-227ENST00000567495 SERPINB2P05120 415 aa24.53■■□□□ 1.52
CLN3-227ENST00000567495 DPEP1P16444 411 aa24.53■■□□□ 1.52
CLN3-227ENST00000567495 CLEC4GQ6UXB4 293 aa24.53■■□□□ 1.52
CLN3-227ENST00000567495 RRP7AQ9Y3A4 280 aaKnown RBP24.53■■□□□ 1.52
CLN3-227ENST00000567495 NEUROD2Q15784 382 aa24.52■■□□□ 1.52
CLN3-227ENST00000567495 NBPF26B4DH59 902 aa24.51■■□□□ 1.51
CLN3-227ENST00000567495 NBPF10Q6P3W6 841 aaKnown RBP24.51■■□□□ 1.51
CLN3-227ENST00000567495 NBPF15Q8N660 670 aa24.51■■□□□ 1.51
CLN3-227ENST00000567495 ZNF652Q9Y2D9 606 aa24.51■■□□□ 1.51
CLN3-227ENST00000567495 ANP32CO43423 234 aa24.5■■□□□ 1.51
CLN3-227ENST00000567495 BICDL1Q6ZP65 573 aa24.5■■□□□ 1.51
CLN3-227ENST00000567495 SETDB2Q96T68 719 aa24.5■■□□□ 1.51
CLN3-227ENST00000567495 PIM2Q9P1W9 311 aa24.5■■□□□ 1.51
CLN3-227ENST00000567495 DLG5Q8TDM6 1919 aa24.49■■□□□ 1.51
CLN3-227ENST00000567495 TBC1D9BQ66K14 1250 aa24.49■■□□□ 1.51
CLN3-227ENST00000567495 TRIM35Q9UPQ4 493 aa24.49■■□□□ 1.51
CLN3-227ENST00000567495 KIF13BQ9NQT8 1826 aa24.49■■□□□ 1.51
CLN3-227ENST00000567495 PIP4K2AP48426 406 aaPredicted RBP24.48■■□□□ 1.51
CLN3-227ENST00000567495 ERBB4Q15303 1308 aa24.48■■□□□ 1.51
CLN3-227ENST00000567495 ZNF784Q8NCA9 323 aaPredicted RBP24.48■■□□□ 1.51
CLN3-227ENST00000567495 CARMIL3Q8ND23 1372 aa24.48■■□□□ 1.51
CLN3-227ENST00000567495 WWC3Q9ULE0 1092 aa24.48■■□□□ 1.51
CLN3-227ENST00000567495 BCS1LQ9Y276 419 aa24.48■■□□□ 1.51
CLN3-227ENST00000567495 CHL1O00533 1208 aa24.47■■□□□ 1.51
CLN3-227ENST00000567495 KCNA3P22001 575 aa24.47■■□□□ 1.51
CLN3-227ENST00000567495 PDZRN3Q9UPQ7 1066 aa24.47■■□□□ 1.51
CLN3-227ENST00000567495 DALRD3Q5D0E6 543 aaKnown RBP24.46■■□□□ 1.51
CLN3-227ENST00000567495 CALD1Q05682 793 aaKnown RBP24.45■■□□□ 1.5
CLN3-227ENST00000567495 CHD4Q14839 1912 aa24.45■■□□□ 1.5
CLN3-227ENST00000567495 APAF1O14727 1248 aa24.44■■□□□ 1.5
CLN3-227ENST00000567495 KDM3BQ7LBC6 1761 aa24.44■■□□□ 1.5
CLN3-227ENST00000567495 CHRNA5P30532 468 aa24.43■■□□□ 1.5
CLN3-227ENST00000567495 BRIP1Q9BX63 1249 aa24.43■■□□□ 1.5
CLN3-227ENST00000567495 ERVV-1B6SEH8 477 aa24.42■■□□□ 1.5
CLN3-227ENST00000567495 NPHP1O15259 732 aa24.42■■□□□ 1.5
CLN3-227ENST00000567495 PDE6BP35913 854 aa24.42■■□□□ 1.5
CLN3-227ENST00000567495 CNBD1Q8NA66 436 aa24.42■■□□□ 1.5
CLN3-227ENST00000567495 CFAP44Q96MT7 982 aa24.42■■□□□ 1.5
CLN3-227ENST00000567495 SCN7AQ01118 1682 aa24.41■■□□□ 1.5
CLN3-227ENST00000567495 H0YIN7 160 aa24.41■■□□□ 1.5
CLN3-227ENST00000567495 PRR5LQ6MZQ0 368 aa24.41■■□□□ 1.5
CLN3-227ENST00000567495 KIF6Q6ZMV9 814 aa24.41■■□□□ 1.5
CLN3-227ENST00000567495 ST5P78524 1137 aa24.4■■□□□ 1.5
CLN3-227ENST00000567495 LAS1LQ9Y4W2 734 aaKnown RBP24.4■■□□□ 1.5
CLN3-227ENST00000567495 ARHGAP27Q6ZUM4 889 aa24.39■■□□□ 1.49
CLN3-227ENST00000567495 NBPF5PQ86XG9 351 aaPredicted RBP24.39■■□□□ 1.49
CLN3-227ENST00000567495 C2CD5Q86YS7 1000 aa24.39■■□□□ 1.49
CLN3-227ENST00000567495 MRS2Q9HD23 443 aa24.39■■□□□ 1.49
CLN3-227ENST00000567495 NIP7Q9Y221 180 aaKnown RBP eCLIP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms