RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 EXOSC9Q06265 439 aaKnown RBP14.33□□□□□ -0.12
CLN3-224ENST00000566816 TWISTNBQ3B726 338 aaPredicted RBP14.33□□□□□ -0.12
CLN3-224ENST00000566816 INTS5Q6P9B9 1019 aaKnown RBP14.33□□□□□ -0.12
CLN3-224ENST00000566816 CCDC87Q9NVE4 849 aa14.33□□□□□ -0.12
CLN3-224ENST00000566816 ADRA2BP18089 450 aa14.32□□□□□ -0.12
CLN3-224ENST00000566816 IL6STP40189 918 aaPredicted RBP14.32□□□□□ -0.12
CLN3-224ENST00000566816 CRKLP46109 303 aaKnown RBP14.32□□□□□ -0.12
CLN3-224ENST00000566816 SLC15A2Q16348 729 aa14.32□□□□□ -0.12
CLN3-224ENST00000566816 STK32BQ9NY57 414 aa14.32□□□□□ -0.12
CLN3-224ENST00000566816 RGL2O15211 777 aa14.31□□□□□ -0.12
CLN3-224ENST00000566816 SSFA2P28290 1259 aa14.31□□□□□ -0.12
CLN3-224ENST00000566816 KCNQ4P56696 695 aa14.31□□□□□ -0.12
CLN3-224ENST00000566816 CCDC30Q5VVM6 783 aa14.31□□□□□ -0.12
CLN3-224ENST00000566816 TSPYL6Q8N831 410 aa14.31□□□□□ -0.12
CLN3-224ENST00000566816 DBF4Q9UBU7 674 aaPredicted RBP14.31□□□□□ -0.12
CLN3-224ENST00000566816 PRAMEF22A3QJZ6 481 aa14.3□□□□□ -0.12
CLN3-224ENST00000566816 EIF5P55010 431 aaKnown RBP14.3□□□□□ -0.12
CLN3-224ENST00000566816 KRT24Q2M2I5 525 aa14.3□□□□□ -0.12
CLN3-224ENST00000566816 HDGFL1Q5TGJ6 251 aa14.3□□□□□ -0.12
CLN3-224ENST00000566816 AK7Q96M32 723 aa14.3□□□□□ -0.12
CLN3-224ENST00000566816 DDX21Q9NR30 783 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLN3-224ENST00000566816 RTCBQ9Y3I0 505 aaKnown RBP14.3□□□□□ -0.12
CLN3-224ENST00000566816 A0A087WZG4 1122 aa14.29□□□□□ -0.12
CLN3-224ENST00000566816 A1BGP04217 495 aa14.29□□□□□ -0.12
CLN3-224ENST00000566816 PDIA6Q15084 440 aa14.29□□□□□ -0.12
CLN3-224ENST00000566816 HYPKQ9NX55 129 aa14.29□□□□□ -0.12
CLN3-224ENST00000566816 C5P01031 1676 aa14.29□□□□□ -0.12
CLN3-224ENST00000566816 NBPF26B4DH59 902 aa14.28□□□□□ -0.12
CLN3-224ENST00000566816 ELL2O00472 640 aaPredicted RBP14.28□□□□□ -0.12
CLN3-224ENST00000566816 EIF2S2P20042 333 aaKnown RBP14.28□□□□□ -0.12
CLN3-224ENST00000566816 BRPF1P55201 1214 aaPredicted RBP14.28□□□□□ -0.12
CLN3-224ENST00000566816 ALDH1L2Q3SY69 923 aa14.28□□□□□ -0.12
CLN3-224ENST00000566816 TRAPPC3LQ5T215 181 aa14.28□□□□□ -0.12
CLN3-224ENST00000566816 NBPF10Q6P3W6 841 aaKnown RBP14.28□□□□□ -0.12
CLN3-224ENST00000566816 NBPF15Q8N660 670 aa14.28□□□□□ -0.12
CLN3-224ENST00000566816 RREB1Q92766 1687 aa14.28□□□□□ -0.12
CLN3-224ENST00000566816 TFCP2L1Q9NZI6 479 aa14.28□□□□□ -0.12
CLN3-224ENST00000566816 ZBTB1Q9Y2K1 713 aa14.28□□□□□ -0.12
CLN3-224ENST00000566816 GNPATO15228 680 aa14.27□□□□□ -0.13
CLN3-224ENST00000566816 ZNF827Q17R98 1081 aa14.27□□□□□ -0.13
CLN3-224ENST00000566816 LRP10Q7Z4F1 713 aa14.27□□□□□ -0.13
CLN3-224ENST00000566816 NPM2Q86SE8 214 aaKnown RBP14.27□□□□□ -0.13
CLN3-224ENST00000566816 SLC16A10Q8TF71 515 aa14.27□□□□□ -0.13
CLN3-224ENST00000566816 ANO8Q9HCE9 1232 aaPredicted RBP14.27□□□□□ -0.13
CLN3-224ENST00000566816 STK31Q9BXU1 1019 aa14.26□□□□□ -0.13
CLN3-224ENST00000566816 TJP1Q07157 1748 aa14.25□□□□□ -0.13
CLN3-224ENST00000566816 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.25□□□□□ -0.13
CLN3-224ENST00000566816 CANXP27824 592 aaKnown RBP14.25□□□□□ -0.13
CLN3-224ENST00000566816 ARHGEF1Q92888 912 aaKnown RBP14.25□□□□□ -0.13
CLN3-224ENST00000566816 C4BP0C0L5 1744 aa14.24□□□□□ -0.13
CLN3-224ENST00000566816 ERVV-1B6SEH8 477 aa14.24□□□□□ -0.13
CLN3-224ENST00000566816 CLEC4GQ6UXB4 293 aa14.24□□□□□ -0.13
CLN3-224ENST00000566816 YTHDC1Q96MU7 727 aaKnown RBP14.24□□□□□ -0.13
CLN3-224ENST00000566816 CHPF2Q9P2E5 772 aa14.24□□□□□ -0.13
CLN3-224ENST00000566816 NARFQ9UHQ1 456 aa14.24□□□□□ -0.13
CLN3-224ENST00000566816 COL5A3P25940 1745 aaPredicted RBP14.24□□□□□ -0.13
CLN3-224ENST00000566816 PNPLA7Q6ZV29 1317 aa14.23□□□□□ -0.13
CLN3-224ENST00000566816 TAF1LQ8IZX4 1826 aa14.23□□□□□ -0.13
CLN3-224ENST00000566816 SLC4A2P04920 1241 aa14.23□□□□□ -0.13
CLN3-224ENST00000566816 RFC4P35249 363 aa14.23□□□□□ -0.13
CLN3-224ENST00000566816 COL23A1Q86Y22 540 aaPredicted RBP14.23□□□□□ -0.13
CLN3-224ENST00000566816 NUP188Q5SRE5 1749 aa14.22□□□□□ -0.13
CLN3-224ENST00000566816 RARSP54136 660 aaKnown RBP14.22□□□□□ -0.13
CLN3-224ENST00000566816 MYH14Q7Z406 1995 aaKnown RBP14.22□□□□□ -0.13
CLN3-224ENST00000566816 COL15A1P39059 1388 aa14.22□□□□□ -0.13
CLN3-224ENST00000566816 ZPR1O75312 459 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 MYL6BP14649 208 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 PROSER3Q2NL68 480 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 COPS6Q7L5N1 327 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 AMIGO3Q86WK7 504 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 DZIP3Q86Y13 1208 aaKnown RBP14.21□□□□□ -0.13
CLN3-224ENST00000566816 NLGN1Q8N2Q7 840 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 MRPL50Q8N5N7 158 aaKnown RBP14.21□□□□□ -0.13
CLN3-224ENST00000566816 SSH1Q8WYL5 1049 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 NECTIN2Q92692 538 aa14.21□□□□□ -0.13
CLN3-224ENST00000566816 USP42Q9H9J4 1324 aaKnown RBP14.2□□□□□ -0.14
CLN3-224ENST00000566816 LAMB4A4D0S4 1761 aa14.2□□□□□ -0.14
CLN3-224ENST00000566816 DDX58O95786 925 aaKnown RBP14.2□□□□□ -0.14
CLN3-224ENST00000566816 R3HDM1Q15032 1099 aaKnown RBP14.2□□□□□ -0.14
CLN3-224ENST00000566816 ANKRD13DQ6ZTN6 518 aa14.2□□□□□ -0.14
CLN3-224ENST00000566816 PLBD2Q8NHP8 589 aa14.2□□□□□ -0.14
CLN3-224ENST00000566816 ARHGAP45Q92619 1136 aa14.2□□□□□ -0.14
CLN3-224ENST00000566816 MAP3K15Q6ZN16 1313 aa14.19□□□□□ -0.14
CLN3-224ENST00000566816 CAMTA2O94983 1202 aa14.19□□□□□ -0.14
CLN3-224ENST00000566816 KIF6Q6ZMV9 814 aa14.19□□□□□ -0.14
CLN3-224ENST00000566816 XAGE3Q8WTP9 111 aa14.19□□□□□ -0.14
CLN3-224ENST00000566816 ZNF652Q9Y2D9 606 aa14.19□□□□□ -0.14
CLN3-224ENST00000566816 PTPRCP08575 1304 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 PHF14O94880 888 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 GYS1P13807 737 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 PIP4K2AP48426 406 aaPredicted RBP14.18□□□□□ -0.14
CLN3-224ENST00000566816 FLIIQ13045 1269 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 TRIM28Q13263 835 aaKnown RBP14.18□□□□□ -0.14
CLN3-224ENST00000566816 HSP90AB3PQ58FF7 597 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 KSR2Q6VAB6 950 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 GIGYF2Q6Y7W6 1299 aaKnown RBP14.18□□□□□ -0.14
CLN3-224ENST00000566816 TTLL7Q6ZT98 887 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 PHAXQ9H814 394 aaKnown RBP14.18□□□□□ -0.14
CLN3-224ENST00000566816 TBC1D2BQ9UPU7 963 aa14.18□□□□□ -0.14
CLN3-224ENST00000566816 IPO8O15397 1037 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms