RNA–Protein interactions for RNA: ENST00000565666.5

CMTM3-210, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 769 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-210ENST00000565666 NEUROD2Q15784 382 aa24.63■■□□□ 1.53
CMTM3-210ENST00000565666 RRP7AQ9Y3A4 280 aaKnown RBP24.63■■□□□ 1.53
CMTM3-210ENST00000565666 PNISRQ8TF01 805 aaKnown RBP24.62■■□□□ 1.53
CMTM3-210ENST00000565666 CCDC184Q52MB2 194 aa24.61■■□□□ 1.53
CMTM3-210ENST00000565666 SYT17Q9BSW7 474 aa24.61■■□□□ 1.53
CMTM3-210ENST00000565666 MIS18AQ9NYP9 233 aa24.61■■□□□ 1.53
CMTM3-210ENST00000565666 ZBTB1Q9Y2K1 713 aa24.61■■□□□ 1.53
CMTM3-210ENST00000565666 KDM3BQ7LBC6 1761 aa24.6■■□□□ 1.53
CMTM3-210ENST00000565666 CANXP27824 592 aaKnown RBP24.59■■□□□ 1.53
CMTM3-210ENST00000565666 MRS2Q9HD23 443 aa24.59■■□□□ 1.53
CMTM3-210ENST00000565666 SOS1Q07889 1333 aaPredicted RBP24.59■■□□□ 1.53
CMTM3-210ENST00000565666 COL15A1P39059 1388 aa24.57■■□□□ 1.52
CMTM3-210ENST00000565666 DCAF8L1A6NGE4 600 aa24.57■■□□□ 1.52
CMTM3-210ENST00000565666 SNRPA1P09661 255 aaKnown RBP24.57■■□□□ 1.52
CMTM3-210ENST00000565666 NLGN1Q8N2Q7 840 aa24.57■■□□□ 1.52
CMTM3-210ENST00000565666 GYS1P13807 737 aa24.56■■□□□ 1.52
CMTM3-210ENST00000565666 SRP68Q9UHB9 627 aaKnown RBP24.56■■□□□ 1.52
CMTM3-210ENST00000565666 USP42Q9H9J4 1324 aaKnown RBP24.56■■□□□ 1.52
CMTM3-210ENST00000565666 ZPR1O75312 459 aa24.55■■□□□ 1.52
CMTM3-210ENST00000565666 MMP10P09238 476 aa24.54■■□□□ 1.52
CMTM3-210ENST00000565666 ZNF330Q9Y3S2 320 aaPredicted RBP24.54■■□□□ 1.52
CMTM3-210ENST00000565666 LAMB4A4D0S4 1761 aa24.53■■□□□ 1.52
CMTM3-210ENST00000565666 PRAMEF22A3QJZ6 481 aa24.53■■□□□ 1.52
CMTM3-210ENST00000565666 NPM2Q86SE8 214 aaKnown RBP24.53■■□□□ 1.52
CMTM3-210ENST00000565666 TSPYL4Q9UJ04 414 aa24.53■■□□□ 1.52
CMTM3-210ENST00000565666 USP16Q9Y5T5 823 aa24.53■■□□□ 1.52
CMTM3-210ENST00000565666 APAF1O14727 1248 aa24.52■■□□□ 1.52
CMTM3-210ENST00000565666 A1BGP04217 495 aa24.52■■□□□ 1.52
CMTM3-210ENST00000565666 A0A087WZG4 1122 aa24.51■■□□□ 1.51
CMTM3-210ENST00000565666 USPL1Q5W0Q7 1092 aa24.51■■□□□ 1.51
CMTM3-210ENST00000565666 TRIM35Q9UPQ4 493 aa24.51■■□□□ 1.51
CMTM3-210ENST00000565666 IL6STP40189 918 aaPredicted RBP24.5■■□□□ 1.51
CMTM3-210ENST00000565666 EIF5P55010 431 aaKnown RBP24.5■■□□□ 1.51
CMTM3-210ENST00000565666 EIF4A1P60842 406 aaKnown RBP24.5■■□□□ 1.51
CMTM3-210ENST00000565666 NARFQ9UHQ1 456 aa24.5■■□□□ 1.51
CMTM3-210ENST00000565666 FKBP8Q14318 412 aa24.49■■□□□ 1.51
CMTM3-210ENST00000565666 PARP3Q9Y6F1 533 aa24.49■■□□□ 1.51
CMTM3-210ENST00000565666 NLGN2Q8NFZ4 835 aa24.48■■□□□ 1.51
CMTM3-210ENST00000565666 BABAM1Q9NWV8 329 aa24.48■■□□□ 1.51
CMTM3-210ENST00000565666 LAS1LQ9Y4W2 734 aaKnown RBP24.48■■□□□ 1.51
CMTM3-210ENST00000565666 CD2APQ9Y5K6 639 aa24.48■■□□□ 1.51
CMTM3-210ENST00000565666 PIP4K2AP48426 406 aaPredicted RBP24.47■■□□□ 1.51
CMTM3-210ENST00000565666 GIGYF1O75420 1035 aaPredicted RBP24.46■■□□□ 1.51
CMTM3-210ENST00000565666 TBC1D2BQ9UPU7 963 aa24.45■■□□□ 1.5
CMTM3-210ENST00000565666 SCN7AQ01118 1682 aa24.45■■□□□ 1.5
CMTM3-210ENST00000565666 PELP1Q8IZL8 1130 aaKnown RBP24.44■■□□□ 1.5
CMTM3-210ENST00000565666 CALD1Q05682 793 aaKnown RBP24.42■■□□□ 1.5
CMTM3-210ENST00000565666 DZIP3Q86Y13 1208 aaKnown RBP24.42■■□□□ 1.5
CMTM3-210ENST00000565666 NBPF26B4DH59 902 aa24.41■■□□□ 1.5
CMTM3-210ENST00000565666 CHL1O00533 1208 aa24.41■■□□□ 1.5
CMTM3-210ENST00000565666 DDR1Q08345 913 aa24.41■■□□□ 1.5
CMTM3-210ENST00000565666 GPR162Q16538 588 aa24.41■■□□□ 1.5
CMTM3-210ENST00000565666 NBPF10Q6P3W6 841 aaKnown RBP24.41■■□□□ 1.5
CMTM3-210ENST00000565666 NBPF15Q8N660 670 aa24.41■■□□□ 1.5
CMTM3-210ENST00000565666 BCL2L12Q9HB09 334 aa24.41■■□□□ 1.5
CMTM3-210ENST00000565666 BCORQ6W2J9 1755 aa24.41■■□□□ 1.5
CMTM3-210ENST00000565666 KIF13BQ9NQT8 1826 aa24.4■■□□□ 1.5
CMTM3-210ENST00000565666 SENP3-EIF4A1A0A087X0R7 540 aa24.4■■□□□ 1.5
CMTM3-210ENST00000565666 TM4SF1P30408 202 aa24.4■■□□□ 1.5
CMTM3-210ENST00000565666 NFIXQ14938 502 aa24.4■■□□□ 1.5
CMTM3-210ENST00000565666 C10orf71Q711Q0 1435 aa24.4■■□□□ 1.5
CMTM3-210ENST00000565666 BICDL1Q6ZP65 573 aa24.39■■□□□ 1.49
CMTM3-210ENST00000565666 FAM9BQ8IZU0 186 aa24.39■■□□□ 1.49
CMTM3-210ENST00000565666 CFAP44Q96MT7 982 aa24.39■■□□□ 1.49
CMTM3-210ENST00000565666 POLRMTO00411 1230 aaKnown RBP24.38■■□□□ 1.49
CMTM3-210ENST00000565666 EIF2S2P20042 333 aaKnown RBP24.38■■□□□ 1.49
CMTM3-210ENST00000565666 CAMTA2O94983 1202 aa24.37■■□□□ 1.49
CMTM3-210ENST00000565666 NGEFQ8N5V2 710 aa24.37■■□□□ 1.49
CMTM3-210ENST00000565666 AFDNP55196 1824 aaKnown RBP24.36■■□□□ 1.49
CMTM3-210ENST00000565666 MYL6BP14649 208 aa24.36■■□□□ 1.49
CMTM3-210ENST00000565666 GNAI1P63096 354 aa24.36■■□□□ 1.49
CMTM3-210ENST00000565666 N4BP2Q86UW6 1770 aaPredicted RBP24.35■■□□□ 1.49
CMTM3-210ENST00000565666 TBC1D9BQ66K14 1250 aa24.35■■□□□ 1.49
CMTM3-210ENST00000565666 MBIPQ9NS73 344 aa24.35■■□□□ 1.49
CMTM3-210ENST00000565666 IFT57Q9NWB7 429 aa24.35■■□□□ 1.49
CMTM3-210ENST00000565666 ERBB4Q15303 1308 aa24.35■■□□□ 1.49
CMTM3-210ENST00000565666 SERPINB2P05120 415 aa24.34■■□□□ 1.49
CMTM3-210ENST00000565666 TGFB2P61812 414 aa24.34■■□□□ 1.49
CMTM3-210ENST00000565666 KRT24Q2M2I5 525 aa24.34■■□□□ 1.49
CMTM3-210ENST00000565666 ZNF652Q9Y2D9 606 aa24.34■■□□□ 1.49
CMTM3-210ENST00000565666 PXDNLA1KZ92 1463 aa24.33■■□□□ 1.49
CMTM3-210ENST00000565666 KIAA1551Q9HCM1 1747 aa24.33■■□□□ 1.49
CMTM3-210ENST00000565666 NRXN2Q9P2S2 1712 aa24.33■■□□□ 1.49
CMTM3-210ENST00000565666 NECTIN2Q92692 538 aa24.33■■□□□ 1.49
CMTM3-210ENST00000565666 WWC3Q9ULE0 1092 aa24.33■■□□□ 1.49
CMTM3-210ENST00000565666 ZNF853P0CG23 659 aa24.32■■□□□ 1.48
CMTM3-210ENST00000565666 CCDC27Q2M243 656 aa24.32■■□□□ 1.48
CMTM3-210ENST00000565666 CARMIL3Q8ND23 1372 aa24.31■■□□□ 1.48
CMTM3-210ENST00000565666 KIF6Q6ZMV9 814 aa24.31■■□□□ 1.48
CMTM3-210ENST00000565666 SETDB2Q96T68 719 aa24.31■■□□□ 1.48
CMTM3-210ENST00000565666 SALL2Q9Y467 1007 aaPredicted RBP24.31■■□□□ 1.48
CMTM3-210ENST00000565666 A0A0G2JLW4 131 aa24.3■■□□□ 1.48
CMTM3-210ENST00000565666 YBX3P16989 372 aaKnown RBP eCLIP24.3■■□□□ 1.481e-6■■□□□ 12.5
CMTM3-210ENST00000565666 CLEC4GQ6UXB4 293 aa24.3■■□□□ 1.48
CMTM3-210ENST00000565666 WWC1Q8IX03 1113 aa24.3■■□□□ 1.48
CMTM3-210ENST00000565666 NPHP1O15259 732 aa24.29■■□□□ 1.48
CMTM3-210ENST00000565666 DPEP1P16444 411 aa24.29■■□□□ 1.48
CMTM3-210ENST00000565666 GRIN3BO60391 1043 aa24.28■■□□□ 1.48
CMTM3-210ENST00000565666 HOXB7P09629 217 aa24.28■■□□□ 1.48
CMTM3-210ENST00000565666 NCBP3Q53F19 620 aaKnown RBP24.28■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms