RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CLN3Q13286 438 aa9.02□□□□□ -0.97
VPS35-204ENST00000563884 TRIM22Q8IYM9 498 aa9.02□□□□□ -0.97
VPS35-204ENST00000563884 TMEM151AQ8N4L1 468 aa9.02□□□□□ -0.97
VPS35-204ENST00000563884 ZNF837Q96EG3 531 aaPredicted RBP9.02□□□□□ -0.97
VPS35-204ENST00000563884 OSBPL3Q9H4L5 887 aa9.02□□□□□ -0.97
VPS35-204ENST00000563884 GPR25O00155 361 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 GDF11O95390 407 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 MARSP56192 900 aaKnown RBP9.01□□□□□ -0.97
VPS35-204ENST00000563884 MAP3K10Q02779 954 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 RASSF7Q02833 373 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 SRSF11Q05519 484 aaKnown RBP9.01□□□□□ -0.97
VPS35-204ENST00000563884 GAS6Q14393 721 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 SUPT6HQ7KZ85 1726 aaKnown RBP9.01□□□□□ -0.97
VPS35-204ENST00000563884 KCTD17Q8N5Z5 321 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 GMCL1Q96IK5 515 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 DYRK1BQ9Y463 629 aa9.01□□□□□ -0.97
VPS35-204ENST00000563884 ABCA8O94911 1581 aa9□□□□□ -0.97
VPS35-204ENST00000563884 H7C1W4 665 aa9□□□□□ -0.97
VPS35-204ENST00000563884 TRAK2O60296 914 aa9□□□□□ -0.97
VPS35-204ENST00000563884 ARHGEF15O94989 841 aa9□□□□□ -0.97
VPS35-204ENST00000563884 GSK3AP49840 483 aa9□□□□□ -0.97
VPS35-204ENST00000563884 DBN1Q16643 649 aa9□□□□□ -0.97
VPS35-204ENST00000563884 NBPF10Q6P3W6 841 aaKnown RBP9□□□□□ -0.97
VPS35-204ENST00000563884 NBPF15Q8N660 670 aa9□□□□□ -0.97
VPS35-204ENST00000563884 GRIP2Q9C0E4 1043 aa9□□□□□ -0.97
VPS35-204ENST00000563884 RAB6BQ9NRW1 208 aa9□□□□□ -0.97
VPS35-204ENST00000563884 CTTNBP2Q8WZ74 1663 aa9□□□□□ -0.97
VPS35-204ENST00000563884 ARHGEF12Q9NZN5 1544 aa9□□□□□ -0.97
VPS35-204ENST00000563884 SIGLEC1Q9BZZ2 1709 aa9□□□□□ -0.97
VPS35-204ENST00000563884 KIF27Q86VH2 1401 aa8.99□□□□□ -0.97
VPS35-204ENST00000563884 MYCP01106 439 aaPredicted RBP8.99□□□□□ -0.97
VPS35-204ENST00000563884 LYPD4Q6UWN0 246 aa8.99□□□□□ -0.97
VPS35-204ENST00000563884 GTPBP3Q969Y2 492 aaKnown RBP8.99□□□□□ -0.97
VPS35-204ENST00000563884 PRM3Q9NNZ6 103 aa8.99□□□□□ -0.97
VPS35-204ENST00000563884 TIMMDC1Q9NPL8 285 aa8.99□□□□□ -0.97
VPS35-204ENST00000563884 CEP126Q9P2H0 1117 aa8.99□□□□□ -0.97
VPS35-204ENST00000563884 MAGI2Q86UL8 1455 aa8.98□□□□□ -0.97
VPS35-204ENST00000563884 RAPGEF3O95398 923 aa8.98□□□□□ -0.97
VPS35-204ENST00000563884 TRERF1Q96PN7 1200 aa8.98□□□□□ -0.97
VPS35-204ENST00000563884 MBIPQ9NS73 344 aa8.98□□□□□ -0.97
VPS35-204ENST00000563884 DENND4BO75064 1496 aaPredicted RBP8.97□□□□□ -0.97
VPS35-204ENST00000563884 WASLO00401 505 aaPredicted RBP8.97□□□□□ -0.97
VPS35-204ENST00000563884 GNRH1P01148 92 aa8.97□□□□□ -0.97
VPS35-204ENST00000563884 IRS1P35568 1242 aa8.97□□□□□ -0.97
VPS35-204ENST00000563884 TMEM132AQ24JP5 1023 aa8.97□□□□□ -0.97
VPS35-204ENST00000563884 TAS1R3Q7RTX0 852 aa8.97□□□□□ -0.97
VPS35-204ENST00000563884 CCDC85AQ96PX6 553 aaPredicted RBP8.97□□□□□ -0.97
VPS35-204ENST00000563884 CDCA7Q9BWT1 371 aaPredicted RBP8.97□□□□□ -0.97
VPS35-204ENST00000563884 TBC1D2BQ9UPU7 963 aa8.97□□□□□ -0.97
VPS35-204ENST00000563884 C3P01024 1663 aa8.97□□□□□ -0.97
VPS35-204ENST00000563884 GOLGA3Q08378 1498 aa8.96□□□□□ -0.97
VPS35-204ENST00000563884 SPATA31C2B4DYI2 1134 aa8.96□□□□□ -0.98
VPS35-204ENST00000563884 CELA2BP08218 269 aaPredicted RBP8.96□□□□□ -0.98
VPS35-204ENST00000563884 EIF4G2P78344 907 aaKnown RBP eCLIP8.96□□□□□ -0.98
VPS35-204ENST00000563884 CNKSR1Q969H4 720 aa8.96□□□□□ -0.98
VPS35-204ENST00000563884 WDR44Q5JSH3 913 aa8.95□□□□□ -0.98
VPS35-204ENST00000563884 SCARF2Q96GP6 870 aaPredicted RBP8.95□□□□□ -0.98
VPS35-204ENST00000563884 ESYT1Q9BSJ8 1104 aa8.95□□□□□ -0.98
VPS35-204ENST00000563884 ENAMQ9NRM1 1142 aa8.95□□□□□ -0.98
VPS35-204ENST00000563884 IGF1RP08069 1367 aa8.95□□□□□ -0.98
VPS35-204ENST00000563884 NCOA1Q15788 1441 aa8.95□□□□□ -0.98
VPS35-204ENST00000563884 FHOD3Q2V2M9 1422 aa8.95□□□□□ -0.98
VPS35-204ENST00000563884 IL2RAP01589 272 aa8.94□□□□□ -0.98
VPS35-204ENST00000563884 F11P03951 625 aa8.94□□□□□ -0.98
VPS35-204ENST00000563884 GTF2E1P29083 439 aaPredicted RBP8.94□□□□□ -0.98
VPS35-204ENST00000563884 CENPCQ03188 943 aa8.94□□□□□ -0.98
VPS35-204ENST00000563884 NUCKS1Q9H1E3 243 aaKnown RBP8.94□□□□□ -0.98
VPS35-204ENST00000563884 PHKA2P46019 1235 aa8.93□□□□□ -0.98
VPS35-204ENST00000563884 FAM9AQ8IZU1 332 aaPredicted RBP8.93□□□□□ -0.98
VPS35-204ENST00000563884 ZSCAN10Q96SZ4 725 aaPredicted RBP8.93□□□□□ -0.98
VPS35-204ENST00000563884 DOLKQ9UPQ8 538 aa8.93□□□□□ -0.98
VPS35-204ENST00000563884 CARMIL1Q5VZK9 1371 aa8.93□□□□□ -0.98
VPS35-204ENST00000563884 HSPA1LP34931 641 aa8.92□□□□□ -0.98
VPS35-204ENST00000563884 SLFNL1Q499Z3 407 aa8.92□□□□□ -0.98
VPS35-204ENST00000563884 TMEM214Q6NUQ4 689 aaKnown RBP8.92□□□□□ -0.98
VPS35-204ENST00000563884 GPAMQ9HCL2 828 aa8.92□□□□□ -0.98
VPS35-204ENST00000563884 NSFL1CQ9UNZ2 370 aaKnown RBP8.92□□□□□ -0.98
VPS35-204ENST00000563884 CAMSAP1Q5T5Y3 1602 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 MX2P20592 715 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 USP4Q13107 963 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 ESCO1Q5FWF5 840 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 GNASQ5JWF2 1037 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 KANK3Q6NY19 840 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 RNF135Q8IUD6 432 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 XAGE2Q96GT9 111 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 ZNF142P52746 1687 aaPredicted RBP8.91□□□□□ -0.98
VPS35-204ENST00000563884 HECW1Q76N89 1606 aa8.91□□□□□ -0.98
VPS35-204ENST00000563884 C9orf84Q5VXU9 1444 aa8.9□□□□□ -0.98
VPS35-204ENST00000563884 TOM1O60784 492 aa8.9□□□□□ -0.98
VPS35-204ENST00000563884 IRF5Q13568 498 aa8.9□□□□□ -0.98
VPS35-204ENST00000563884 MLECQ14165 292 aa8.9□□□□□ -0.98
VPS35-204ENST00000563884 TSGA10IPQ3SY00 556 aa8.9□□□□□ -0.98
VPS35-204ENST00000563884 OXLD1Q5BKU9 147 aa8.9□□□□□ -0.98
VPS35-204ENST00000563884 NEDD1Q8NHV4 660 aa8.9□□□□□ -0.98
VPS35-204ENST00000563884 A0A1B0GTH6 734 aa8.89□□□□□ -0.99
VPS35-204ENST00000563884 BCRP11274 1271 aa8.89□□□□□ -0.99
VPS35-204ENST00000563884 VAC14Q08AM6 782 aa8.89□□□□□ -0.99
VPS35-204ENST00000563884 MCM6Q14566 821 aa8.89□□□□□ -0.99
VPS35-204ENST00000563884 ACDQ96AP0 544 aa8.89□□□□□ -0.99
VPS35-204ENST00000563884 CPS1P31327 1500 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms