RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 ZNF428Q96B54 188 aa21.34■■□□□ 1.01
VPS4A-202ENST00000562754 BCL2L13Q9BXK5 485 aa21.34■■□□□ 1.01
VPS4A-202ENST00000562754 TEX13AQ9BXU3 409 aaPredicted RBP21.34■■□□□ 1.01
VPS4A-202ENST00000562754 LRRC4BQ9NT99 713 aa21.34■■□□□ 1.01
VPS4A-202ENST00000562754 C4BP0C0L5 1744 aa21.33■■□□□ 1.01
VPS4A-202ENST00000562754 TXNRD1Q16881 649 aa21.33■■□□□ 1.01
VPS4A-202ENST00000562754 CCDC30Q5VVM6 783 aa21.33■■□□□ 1.01
VPS4A-202ENST00000562754 ALDH1L2Q3SY69 923 aa21.32■■□□□ 1
VPS4A-202ENST00000562754 CHPF2Q9P2E5 772 aa21.32■■□□□ 1
VPS4A-202ENST00000562754 NBPF26B4DH59 902 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 BCAR3O75815 825 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 A1BGP04217 495 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 PIP4K2AP48426 406 aaPredicted RBP21.31■■□□□ 1
VPS4A-202ENST00000562754 PDIA6Q15084 440 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 PROSER3Q2NL68 480 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 SLC27A3Q5K4L6 730 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 NBPF14Q5TI25 921 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 NBPF10Q6P3W6 841 aaKnown RBP21.31■■□□□ 1
VPS4A-202ENST00000562754 MRPL50Q8N5N7 158 aaKnown RBP21.31■■□□□ 1
VPS4A-202ENST00000562754 NBPF15Q8N660 670 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 CAMKK2Q96RR4 588 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 SMC4Q9NTJ3 1288 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 NUP188Q5SRE5 1749 aa21.31■■□□□ 1
VPS4A-202ENST00000562754 ERBB4Q15303 1308 aa21.3■■□□□ 1
VPS4A-202ENST00000562754 STARD3NLO95772 234 aa21.3■■□□□ 1
VPS4A-202ENST00000562754 ANXA1P04083 346 aa21.3■■□□□ 1
VPS4A-202ENST00000562754 EN1Q05925 392 aaPredicted RBP21.3■■□□□ 1
VPS4A-202ENST00000562754 SF3B2Q13435 895 aaKnown RBP21.3■■□□□ 1
VPS4A-202ENST00000562754 CRKLP46109 303 aaKnown RBP21.29■■□□□ 1
VPS4A-202ENST00000562754 BAG6P46379 1132 aa21.29■■□□□ 1
VPS4A-202ENST00000562754 DEFB132Q7Z7B7 95 aa21.29■■□□□ 1
VPS4A-202ENST00000562754 CNTNAP4Q9C0A0 1308 aa21.29■■□□□ 1
VPS4A-202ENST00000562754 EZH2Q15910 746 aaKnown RBP21.28■■□□□ 1
VPS4A-202ENST00000562754 INTS5Q6P9B9 1019 aaKnown RBP21.28■■□□□ 1
VPS4A-202ENST00000562754 LRP10Q7Z4F1 713 aa21.28■■□□□ 1
VPS4A-202ENST00000562754 CCDC125Q86Z20 511 aa21.28■■□□□ 1
VPS4A-202ENST00000562754 UPF1Q92900 1129 aaKnown RBP eCLIP21.28■■□□□ 13e-6■■□□□ 12
VPS4A-202ENST00000562754 STK31Q9BXU1 1019 aa21.28■■□□□ 1
VPS4A-202ENST00000562754 DDX21Q9NR30 783 aaKnown RBP eCLIP21.28■■□□□ 1
VPS4A-202ENST00000562754 CCDC87Q9NVE4 849 aa21.28■■□□□ 1
VPS4A-202ENST00000562754 ZBTB1Q9Y2K1 713 aa21.28■■□□□ 1
VPS4A-202ENST00000562754 SLC4A2P04920 1241 aa21.27■■□□□ 1
VPS4A-202ENST00000562754 G2E3Q7L622 706 aa21.27■■□□□ 1
VPS4A-202ENST00000562754 CHMP4AQ9BY43 222 aa21.27■■□□□ 1
VPS4A-202ENST00000562754 DBF4Q9UBU7 674 aaPredicted RBP21.27■■□□□ 1
VPS4A-202ENST00000562754 UBR3Q6ZT12 1888 aa21.26■□□□□ 0.99
VPS4A-202ENST00000562754 BRPF1P55201 1214 aaPredicted RBP21.26■□□□□ 0.99
VPS4A-202ENST00000562754 TUBGCP6Q96RT7 1819 aa21.26■□□□□ 0.99
VPS4A-202ENST00000562754 MYL6BP14649 208 aa21.25■□□□□ 0.99
VPS4A-202ENST00000562754 CANXP27824 592 aaKnown RBP21.24■□□□□ 0.99
VPS4A-202ENST00000562754 RC3H1Q5TC82 1133 aaKnown RBP21.24■□□□□ 0.99
VPS4A-202ENST00000562754 PHAXQ9H814 394 aaKnown RBP21.24■□□□□ 0.99
VPS4A-202ENST00000562754 HYPKQ9NX55 129 aa21.23■□□□□ 0.99
VPS4A-202ENST00000562754 KIF16BQ96L93 1317 aa21.23■□□□□ 0.99
VPS4A-202ENST00000562754 C4AP0C0L4 1744 aa21.22■□□□□ 0.99
VPS4A-202ENST00000562754 FLIIQ13045 1269 aa21.22■□□□□ 0.99
VPS4A-202ENST00000562754 RNF123Q5XPI4 1314 aa21.22■□□□□ 0.99
VPS4A-202ENST00000562754 IL6STP40189 918 aaPredicted RBP21.21■□□□□ 0.99
VPS4A-202ENST00000562754 ZNF827Q17R98 1081 aa21.21■□□□□ 0.99
VPS4A-202ENST00000562754 AMIGO3Q86WK7 504 aa21.21■□□□□ 0.99
VPS4A-202ENST00000562754 XAGE3Q8WTP9 111 aa21.21■□□□□ 0.99
VPS4A-202ENST00000562754 NOB1Q9ULX3 412 aaKnown RBP21.21■□□□□ 0.99
VPS4A-202ENST00000562754 ARFGEF2Q9Y6D5 1785 aa21.2■□□□□ 0.99
VPS4A-202ENST00000562754 GNPATO15228 680 aa21.2■□□□□ 0.98
VPS4A-202ENST00000562754 EIF5P55010 431 aaKnown RBP21.2■□□□□ 0.98
VPS4A-202ENST00000562754 RRP1P56182 461 aaKnown RBP21.2■□□□□ 0.98
VPS4A-202ENST00000562754 TNNQ9UQP3 1299 aa21.2■□□□□ 0.98
VPS4A-202ENST00000562754 SUPT16HQ9Y5B9 1047 aaKnown RBP21.2■□□□□ 0.98
VPS4A-202ENST00000562754 COL15A1P39059 1388 aa21.2■□□□□ 0.98
VPS4A-202ENST00000562754 BCORQ6W2J9 1755 aa21.2■□□□□ 0.98
VPS4A-202ENST00000562754 PLIN1O60240 522 aa21.19■□□□□ 0.98
VPS4A-202ENST00000562754 RPS6KA4O75676 772 aa21.19■□□□□ 0.98
VPS4A-202ENST00000562754 SMIM5Q71RC9 77 aa21.19■□□□□ 0.98
VPS4A-202ENST00000562754 FRAT1Q92837 279 aaPredicted RBP21.19■□□□□ 0.98
VPS4A-202ENST00000562754 AKT1S1Q96B36 256 aa21.19■□□□□ 0.98
VPS4A-202ENST00000562754 AK7Q96M32 723 aa21.19■□□□□ 0.98
VPS4A-202ENST00000562754 ANO8Q9HCE9 1232 aaPredicted RBP21.19■□□□□ 0.98
VPS4A-202ENST00000562754 ZNF330Q9Y3S2 320 aaPredicted RBP21.19■□□□□ 0.98
VPS4A-202ENST00000562754 SCN7AQ01118 1682 aa21.18■□□□□ 0.98
VPS4A-202ENST00000562754 AIMP1Q12904 312 aaKnown RBP21.18■□□□□ 0.98
VPS4A-202ENST00000562754 TTLL7Q6ZT98 887 aa21.18■□□□□ 0.98
VPS4A-202ENST00000562754 COPS6Q7L5N1 327 aa21.18■□□□□ 0.98
VPS4A-202ENST00000562754 PTPRCP08575 1304 aa21.18■□□□□ 0.98
VPS4A-202ENST00000562754 ADCY9O60503 1353 aa21.18■□□□□ 0.98
VPS4A-202ENST00000562754 QSER1Q2KHR3 1735 aa21.18■□□□□ 0.98
VPS4A-202ENST00000562754 N4BP2Q86UW6 1770 aaPredicted RBP21.18■□□□□ 0.98
VPS4A-202ENST00000562754 TRIM27P14373 513 aa21.16■□□□□ 0.98
VPS4A-202ENST00000562754 FKBP5Q13451 457 aaPredicted RBP21.16■□□□□ 0.98
VPS4A-202ENST00000562754 ZKSCAN2Q63HK3 967 aa21.16■□□□□ 0.98
VPS4A-202ENST00000562754 RTCBQ9Y3I0 505 aaKnown RBP21.16■□□□□ 0.98
VPS4A-202ENST00000562754 HMGB2P26583 209 aaKnown RBP21.15■□□□□ 0.98
VPS4A-202ENST00000562754 ATF7IPQ6VMQ6 1270 aa21.15■□□□□ 0.98
VPS4A-202ENST00000562754 ARHGAP45Q92619 1136 aa21.15■□□□□ 0.98
VPS4A-202ENST00000562754 F6X3S4 739 aa21.14■□□□□ 0.97
VPS4A-202ENST00000562754 IPO8O15397 1037 aaKnown RBP21.14■□□□□ 0.97
VPS4A-202ENST00000562754 ABCC4O15439 1325 aa21.13■□□□□ 0.97
VPS4A-202ENST00000562754 PHF14O94880 888 aa21.13■□□□□ 0.97
VPS4A-202ENST00000562754 DZIP3Q86Y13 1208 aaKnown RBP21.13■□□□□ 0.97
VPS4A-202ENST00000562754 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.13■□□□□ 0.97
VPS4A-202ENST00000562754 API5Q9BZZ5 524 aaKnown RBP21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms