RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 CANXP27824 592 aaKnown RBP20.76■□□□□ 0.91
VPS39-203ENST00000561797 FMNL2Q96PY5 1086 aa20.76■□□□□ 0.91
VPS39-203ENST00000561797 USP42Q9H9J4 1324 aaKnown RBP20.76■□□□□ 0.91
VPS39-203ENST00000561797 STARD3NLO95772 234 aa20.75■□□□□ 0.91
VPS39-203ENST00000561797 ZPR1O75312 459 aa20.74■□□□□ 0.91
VPS39-203ENST00000561797 NFE2L2Q16236 605 aa20.74■□□□□ 0.91
VPS39-203ENST00000561797 COL15A1P39059 1388 aa20.73■□□□□ 0.91
VPS39-203ENST00000561797 KDM3BQ7LBC6 1761 aa20.73■□□□□ 0.91
VPS39-203ENST00000561797 FKBP8Q14318 412 aa20.73■□□□□ 0.91
VPS39-203ENST00000561797 USPL1Q5W0Q7 1092 aa20.73■□□□□ 0.91
VPS39-203ENST00000561797 TEX13AQ9BXU3 409 aaPredicted RBP20.73■□□□□ 0.91
VPS39-203ENST00000561797 PRKRIP1Q9H875 184 aaPredicted RBP20.73■□□□□ 0.91
VPS39-203ENST00000561797 PARP3Q9Y6F1 533 aa20.73■□□□□ 0.91
VPS39-203ENST00000561797 AFDNP55196 1824 aaKnown RBP20.73■□□□□ 0.91
VPS39-203ENST00000561797 WWC3Q9ULE0 1092 aa20.72■□□□□ 0.91
VPS39-203ENST00000561797 KIAA1551Q9HCM1 1747 aa20.72■□□□□ 0.91
VPS39-203ENST00000561797 YBX3P16989 372 aaKnown RBP eCLIP20.71■□□□□ 0.91
VPS39-203ENST00000561797 TAF7Q15545 349 aaPredicted RBP20.71■□□□□ 0.91
VPS39-203ENST00000561797 MIS18AQ9NYP9 233 aa20.71■□□□□ 0.91
VPS39-203ENST00000561797 ZNF330Q9Y3S2 320 aaPredicted RBP20.71■□□□□ 0.91
VPS39-203ENST00000561797 A1BGP04217 495 aa20.7■□□□□ 0.9
VPS39-203ENST00000561797 THUMPD2Q9BTF0 503 aaKnown RBP20.7■□□□□ 0.9
VPS39-203ENST00000561797 NARFQ9UHQ1 456 aa20.7■□□□□ 0.9
VPS39-203ENST00000561797 PRAMEF22A3QJZ6 481 aa20.69■□□□□ 0.9
VPS39-203ENST00000561797 USP16Q9Y5T5 823 aa20.69■□□□□ 0.9
VPS39-203ENST00000561797 LAMB4A4D0S4 1761 aa20.68■□□□□ 0.9
VPS39-203ENST00000561797 EIF5P55010 431 aaKnown RBP20.68■□□□□ 0.9
VPS39-203ENST00000561797 WDR43Q15061 677 aaKnown RBP eCLIP20.68■□□□□ 0.9
VPS39-203ENST00000561797 CCDC146Q8IYE0 955 aa20.68■□□□□ 0.9
VPS39-203ENST00000561797 SNRPA1P09661 255 aaKnown RBP20.67■□□□□ 0.9
VPS39-203ENST00000561797 RIPK4P57078 832 aa20.67■□□□□ 0.9
VPS39-203ENST00000561797 DDR1Q08345 913 aa20.67■□□□□ 0.9
VPS39-203ENST00000561797 C10orf71Q711Q0 1435 aa20.67■□□□□ 0.9
VPS39-203ENST00000561797 BRCA1P38398 1863 aaKnown RBP20.67■□□□□ 0.9
VPS39-203ENST00000561797 A0A087WZG4 1122 aa20.66■□□□□ 0.9
VPS39-203ENST00000561797 GRIN3BO60391 1043 aa20.66■□□□□ 0.9
VPS39-203ENST00000561797 TM4SF1P30408 202 aa20.66■□□□□ 0.9
VPS39-203ENST00000561797 PIP4K2AP48426 406 aaPredicted RBP20.66■□□□□ 0.9
VPS39-203ENST00000561797 SCN7AQ01118 1682 aa20.66■□□□□ 0.9
VPS39-203ENST00000561797 PXDNLA1KZ92 1463 aa20.65■□□□□ 0.9
VPS39-203ENST00000561797 ZNF316A6NFI3 1004 aaPredicted RBP20.65■□□□□ 0.9
VPS39-203ENST00000561797 PNISRQ8TF01 805 aaKnown RBP20.65■□□□□ 0.9
VPS39-203ENST00000561797 BCL2L12Q9HB09 334 aa20.65■□□□□ 0.9
VPS39-203ENST00000561797 TBC1D2BQ9UPU7 963 aa20.65■□□□□ 0.9
VPS39-203ENST00000561797 BCORQ6W2J9 1755 aa20.64■□□□□ 0.9
VPS39-203ENST00000561797 A0A0G2JLW4 131 aa20.64■□□□□ 0.89
VPS39-203ENST00000561797 POLRMTO00411 1230 aaKnown RBP20.64■□□□□ 0.89
VPS39-203ENST00000561797 IL6STP40189 918 aaPredicted RBP20.64■□□□□ 0.89
VPS39-203ENST00000561797 TMPOP42166 694 aaKnown RBP20.64■□□□□ 0.89
VPS39-203ENST00000561797 NFIXQ14938 502 aa20.64■□□□□ 0.89
VPS39-203ENST00000561797 NEUROD2Q15784 382 aa20.64■□□□□ 0.89
VPS39-203ENST00000561797 NPM2Q86SE8 214 aaKnown RBP20.64■□□□□ 0.89
VPS39-203ENST00000561797 ADAMTS8Q9UP79 889 aa20.64■□□□□ 0.89
VPS39-203ENST00000561797 RRP7AQ9Y3A4 280 aaKnown RBP20.64■□□□□ 0.89
VPS39-203ENST00000561797 TGFB2P61812 414 aa20.63■□□□□ 0.89
VPS39-203ENST00000561797 BICDL1Q6ZP65 573 aa20.63■□□□□ 0.89
VPS39-203ENST00000561797 NRXN2Q9P2S2 1712 aa20.63■□□□□ 0.89
VPS39-203ENST00000561797 RUNDC1Q96C34 613 aa20.62■□□□□ 0.89
VPS39-203ENST00000561797 DPEP1P16444 411 aa20.61■□□□□ 0.89
VPS39-203ENST00000561797 LMOD3Q0VAK6 560 aa20.6■□□□□ 0.89
VPS39-203ENST00000561797 ARFGEF1Q9Y6D6 1849 aa20.6■□□□□ 0.89
VPS39-203ENST00000561797 SERPINB2P05120 415 aa20.59■□□□□ 0.89
VPS39-203ENST00000561797 EIF4A1P60842 406 aaKnown RBP20.59■□□□□ 0.89
VPS39-203ENST00000561797 DZIP3Q86Y13 1208 aaKnown RBP20.59■□□□□ 0.89
VPS39-203ENST00000561797 NBPF26B4DH59 902 aa20.58■□□□□ 0.89
VPS39-203ENST00000561797 TBC1D9BQ66K14 1250 aa20.58■□□□□ 0.89
VPS39-203ENST00000561797 NBPF10Q6P3W6 841 aaKnown RBP20.58■□□□□ 0.89
VPS39-203ENST00000561797 NBPF15Q8N660 670 aa20.58■□□□□ 0.89
VPS39-203ENST00000561797 TSPYL4Q9UJ04 414 aa20.58■□□□□ 0.89
VPS39-203ENST00000561797 BCS1LQ9Y276 419 aa20.58■□□□□ 0.89
VPS39-203ENST00000561797 GIGYF1O75420 1035 aaPredicted RBP20.57■□□□□ 0.88
VPS39-203ENST00000561797 CAMTA2O94983 1202 aa20.57■□□□□ 0.88
VPS39-203ENST00000561797 ANKRD31Q8N7Z5 1873 aa20.57■□□□□ 0.88
VPS39-203ENST00000561797 ZNF784Q8NCA9 323 aaPredicted RBP20.57■□□□□ 0.88
VPS39-203ENST00000561797 NUP98P52948 1817 aa20.57■□□□□ 0.88
VPS39-203ENST00000561797 DLEC1Q9Y238 1755 aa20.57■□□□□ 0.88
VPS39-203ENST00000561797 CHRNA5P30532 468 aa20.56■□□□□ 0.88
VPS39-203ENST00000561797 KCNA3P22001 575 aa20.55■□□□□ 0.88
VPS39-203ENST00000561797 CCDC184Q52MB2 194 aa20.55■□□□□ 0.88
VPS39-203ENST00000561797 NGEFQ8N5V2 710 aa20.54■□□□□ 0.88
VPS39-203ENST00000561797 PIM2Q9P1W9 311 aa20.54■□□□□ 0.88
VPS39-203ENST00000561797 TRIM35Q9UPQ4 493 aa20.54■□□□□ 0.88
VPS39-203ENST00000561797 LAS1LQ9Y4W2 734 aaKnown RBP20.54■□□□□ 0.88
VPS39-203ENST00000561797 CACNA1SQ13698 1873 aa20.54■□□□□ 0.88
VPS39-203ENST00000561797 SETDB2Q96T68 719 aa20.53■□□□□ 0.88
VPS39-203ENST00000561797 CARMIL3Q8ND23 1372 aa20.52■□□□□ 0.88
VPS39-203ENST00000561797 APAF1O14727 1248 aa20.51■□□□□ 0.87
VPS39-203ENST00000561797 CCDC24Q8N4L8 307 aa20.51■□□□□ 0.87
VPS39-203ENST00000561797 BABAM1Q9NWV8 329 aa20.51■□□□□ 0.87
VPS39-203ENST00000561797 UTRNP46939 3433 aa20.5■□□□□ 0.87
VPS39-203ENST00000561797 NPHP1O15259 732 aa20.5■□□□□ 0.87
VPS39-203ENST00000561797 ANP32CO43423 234 aa20.5■□□□□ 0.87
VPS39-203ENST00000561797 MYL6BP14649 208 aa20.5■□□□□ 0.87
VPS39-203ENST00000561797 ARHGAP27Q6ZUM4 889 aa20.5■□□□□ 0.87
VPS39-203ENST00000561797 ZNF652Q9Y2D9 606 aa20.5■□□□□ 0.87
VPS39-203ENST00000561797 EIF2S2P20042 333 aaKnown RBP20.49■□□□□ 0.87
VPS39-203ENST00000561797 DALRD3Q5D0E6 543 aaKnown RBP20.49■□□□□ 0.87
VPS39-203ENST00000561797 PRR5LQ6MZQ0 368 aa20.49■□□□□ 0.87
VPS39-203ENST00000561797 CLEC4GQ6UXB4 293 aa20.49■□□□□ 0.87
VPS39-203ENST00000561797 COL11A2P13942 1736 aaPredicted RBP20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms