RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 KIF13BQ9NQT8 1826 aa17.48■□□□□ 0.39
SMAD3-213ENST00000560175 KDM3BQ7LBC6 1761 aa17.48■□□□□ 0.39
SMAD3-213ENST00000560175 MAPK8IP3Q9UPT6 1336 aa17.47■□□□□ 0.39
SMAD3-213ENST00000560175 GOLGB1Q14789 3259 aaKnown RBP17.47■□□□□ 0.39
SMAD3-213ENST00000560175 TM4SF1P30408 202 aa17.46■□□□□ 0.39
SMAD3-213ENST00000560175 NLGN2Q8NFZ4 835 aa17.46■□□□□ 0.39
SMAD3-213ENST00000560175 PNISRQ8TF01 805 aaKnown RBP17.46■□□□□ 0.39
SMAD3-213ENST00000560175 RUNDC1Q96C34 613 aa17.46■□□□□ 0.39
SMAD3-213ENST00000560175 NARFQ9UHQ1 456 aa17.46■□□□□ 0.39
SMAD3-213ENST00000560175 MMP10P09238 476 aa17.45■□□□□ 0.38
SMAD3-213ENST00000560175 SNRPA1P09661 255 aaKnown RBP17.45■□□□□ 0.38
SMAD3-213ENST00000560175 RIPK4P57078 832 aa17.45■□□□□ 0.38
SMAD3-213ENST00000560175 SRP68Q9UHB9 627 aaKnown RBP17.45■□□□□ 0.38
SMAD3-213ENST00000560175 USP16Q9Y5T5 823 aa17.45■□□□□ 0.38
SMAD3-213ENST00000560175 COL15A1P39059 1388 aa17.44■□□□□ 0.38
SMAD3-213ENST00000560175 DCAF8L1A6NGE4 600 aa17.44■□□□□ 0.38
SMAD3-213ENST00000560175 IL6STP40189 918 aaPredicted RBP17.44■□□□□ 0.38
SMAD3-213ENST00000560175 FKBP8Q14318 412 aa17.44■□□□□ 0.38
SMAD3-213ENST00000560175 WDR43Q15061 677 aaKnown RBP eCLIP17.44■□□□□ 0.38
SMAD3-213ENST00000560175 BABAM1Q9NWV8 329 aa17.44■□□□□ 0.38
SMAD3-213ENST00000560175 A1BGP04217 495 aa17.43■□□□□ 0.38
SMAD3-213ENST00000560175 BCL2L12Q9HB09 334 aa17.43■□□□□ 0.38
SMAD3-213ENST00000560175 MIS18AQ9NYP9 233 aa17.43■□□□□ 0.38
SMAD3-213ENST00000560175 PRAMEF22A3QJZ6 481 aa17.42■□□□□ 0.38
SMAD3-213ENST00000560175 CANXP27824 592 aaKnown RBP17.42■□□□□ 0.38
SMAD3-213ENST00000560175 THUMPD2Q9BTF0 503 aaKnown RBP17.42■□□□□ 0.38
SMAD3-213ENST00000560175 TRIM35Q9UPQ4 493 aa17.42■□□□□ 0.38
SMAD3-213ENST00000560175 KIAA1551Q9HCM1 1747 aa17.41■□□□□ 0.38
SMAD3-213ENST00000560175 A0A087WZG4 1122 aa17.41■□□□□ 0.38
SMAD3-213ENST00000560175 ZPR1O75312 459 aa17.41■□□□□ 0.38
SMAD3-213ENST00000560175 EIF4A1P60842 406 aaKnown RBP17.41■□□□□ 0.38
SMAD3-213ENST00000560175 LMOD3Q0VAK6 560 aa17.41■□□□□ 0.38
SMAD3-213ENST00000560175 CCDC184Q52MB2 194 aa17.41■□□□□ 0.38
SMAD3-213ENST00000560175 USPL1Q5W0Q7 1092 aa17.41■□□□□ 0.38
SMAD3-213ENST00000560175 CHD4Q14839 1912 aa17.41■□□□□ 0.38
SMAD3-213ENST00000560175 GIGYF1O75420 1035 aaPredicted RBP17.4■□□□□ 0.38
SMAD3-213ENST00000560175 CCDC146Q8IYE0 955 aa17.4■□□□□ 0.38
SMAD3-213ENST00000560175 NRXN2Q9P2S2 1712 aa17.4■□□□□ 0.38
SMAD3-213ENST00000560175 C10orf71Q711Q0 1435 aa17.39■□□□□ 0.38
SMAD3-213ENST00000560175 LAMB4A4D0S4 1761 aa17.39■□□□□ 0.37
SMAD3-213ENST00000560175 POLRMTO00411 1230 aaKnown RBP17.39■□□□□ 0.37
SMAD3-213ENST00000560175 TGFB2P61812 414 aa17.39■□□□□ 0.37
SMAD3-213ENST00000560175 DDR1Q08345 913 aa17.39■□□□□ 0.37
SMAD3-213ENST00000560175 KLHL34Q8N239 644 aa17.39■□□□□ 0.37
SMAD3-213ENST00000560175 PARP3Q9Y6F1 533 aa17.39■□□□□ 0.37
SMAD3-213ENST00000560175 AFDNP55196 1824 aaKnown RBP17.38■□□□□ 0.37
SMAD3-213ENST00000560175 NBPF26B4DH59 902 aa17.38■□□□□ 0.37
SMAD3-213ENST00000560175 NBPF10Q6P3W6 841 aaKnown RBP17.38■□□□□ 0.37
SMAD3-213ENST00000560175 NBPF15Q8N660 670 aa17.38■□□□□ 0.37
SMAD3-213ENST00000560175 CHL1O00533 1208 aa17.37■□□□□ 0.37
SMAD3-213ENST00000560175 RGL2O15211 777 aa17.37■□□□□ 0.37
SMAD3-213ENST00000560175 NFIXQ14938 502 aa17.37■□□□□ 0.37
SMAD3-213ENST00000560175 RRP7AQ9Y3A4 280 aaKnown RBP17.37■□□□□ 0.37
SMAD3-213ENST00000560175 SCN7AQ01118 1682 aa17.36■□□□□ 0.37
SMAD3-213ENST00000560175 BRCA1P38398 1863 aaKnown RBP17.36■□□□□ 0.37
SMAD3-213ENST00000560175 YBX3P16989 372 aaKnown RBP eCLIP17.36■□□□□ 0.376e-6■□□□□ 10.6
SMAD3-213ENST00000560175 GPR162Q16538 588 aa17.36■□□□□ 0.37
SMAD3-213ENST00000560175 BCORQ6W2J9 1755 aa17.35■□□□□ 0.37
SMAD3-213ENST00000560175 ANP32CO43423 234 aa17.35■□□□□ 0.37
SMAD3-213ENST00000560175 CAMTA2O94983 1202 aa17.35■□□□□ 0.37
SMAD3-213ENST00000560175 TBC1D2BQ9UPU7 963 aa17.35■□□□□ 0.37
SMAD3-213ENST00000560175 PXDNLA1KZ92 1463 aa17.35■□□□□ 0.37
SMAD3-213ENST00000560175 N4BP2Q86UW6 1770 aaPredicted RBP17.35■□□□□ 0.37
SMAD3-213ENST00000560175 GRIN3BO60391 1043 aa17.34■□□□□ 0.37
SMAD3-213ENST00000560175 KCNA3P22001 575 aa17.34■□□□□ 0.37
SMAD3-213ENST00000560175 NEUROD2Q15784 382 aa17.34■□□□□ 0.37
SMAD3-213ENST00000560175 CLEC4GQ6UXB4 293 aa17.34■□□□□ 0.37
SMAD3-213ENST00000560175 TSPYL4Q9UJ04 414 aa17.34■□□□□ 0.37
SMAD3-213ENST00000560175 APAF1O14727 1248 aa17.33■□□□□ 0.36
SMAD3-213ENST00000560175 NCBP3Q53F19 620 aaKnown RBP17.33■□□□□ 0.36
SMAD3-213ENST00000560175 ERBB4Q15303 1308 aa17.32■□□□□ 0.36
SMAD3-213ENST00000560175 ZNF853P0CG23 659 aa17.32■□□□□ 0.36
SMAD3-213ENST00000560175 PIP4K2AP48426 406 aaPredicted RBP17.32■□□□□ 0.36
SMAD3-213ENST00000560175 DZIP3Q86Y13 1208 aaKnown RBP17.32■□□□□ 0.36
SMAD3-213ENST00000560175 SERPINB2P05120 415 aa17.31■□□□□ 0.36
SMAD3-213ENST00000560175 YY1P25490 414 aa17.31■□□□□ 0.36
SMAD3-213ENST00000560175 TBC1D9BQ66K14 1250 aa17.31■□□□□ 0.36
SMAD3-213ENST00000560175 LRP10Q7Z4F1 713 aa17.31■□□□□ 0.36
SMAD3-213ENST00000560175 CFAP44Q96MT7 982 aa17.31■□□□□ 0.36
SMAD3-213ENST00000560175 A0A0G2JLW4 131 aa17.3■□□□□ 0.36
SMAD3-213ENST00000560175 DPEP1P16444 411 aa17.29■□□□□ 0.36
SMAD3-213ENST00000560175 PDIA6Q15084 440 aa17.29■□□□□ 0.36
SMAD3-213ENST00000560175 CCDC27Q2M243 656 aa17.29■□□□□ 0.36
SMAD3-213ENST00000560175 NPM2Q86SE8 214 aaKnown RBP17.29■□□□□ 0.36
SMAD3-213ENST00000560175 ERVV-1B6SEH8 477 aa17.28■□□□□ 0.36
SMAD3-213ENST00000560175 MRS2Q9HD23 443 aa17.28■□□□□ 0.36
SMAD3-213ENST00000560175 ZNF330Q9Y3S2 320 aaPredicted RBP17.28■□□□□ 0.36
SMAD3-213ENST00000560175 NUP98P52948 1817 aa17.28■□□□□ 0.36
SMAD3-213ENST00000560175 ARFGEF1Q9Y6D6 1849 aa17.28■□□□□ 0.36
SMAD3-213ENST00000560175 ANKRD31Q8N7Z5 1873 aa17.27■□□□□ 0.36
SMAD3-213ENST00000560175 SETDB2Q96T68 719 aa17.27■□□□□ 0.36
SMAD3-213ENST00000560175 DLEC1Q9Y238 1755 aa17.27■□□□□ 0.35
SMAD3-213ENST00000560175 CARMIL3Q8ND23 1372 aa17.27■□□□□ 0.35
SMAD3-213ENST00000560175 HOXB7P09629 217 aa17.26■□□□□ 0.35
SMAD3-213ENST00000560175 PELP1Q8IZL8 1130 aaKnown RBP17.26■□□□□ 0.35
SMAD3-213ENST00000560175 IFT57Q9NWB7 429 aa17.26■□□□□ 0.35
SMAD3-213ENST00000560175 CALD1Q05682 793 aaKnown RBP17.25■□□□□ 0.35
SMAD3-213ENST00000560175 PRR5LQ6MZQ0 368 aa17.25■□□□□ 0.35
SMAD3-213ENST00000560175 BICDL1Q6ZP65 573 aa17.25■□□□□ 0.35
SMAD3-213ENST00000560175 PIM2Q9P1W9 311 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms