RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 PARP3Q9Y6F1 533 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 ITGB4P16144 1822 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 C4BP0C0L5 1744 aa5.74□□□□□ -1.49
SNX1-205ENST00000559339 C5P01031 1676 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 HEG1Q9ULI3 1381 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 GYS1P13807 737 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 CANXP27824 592 aaKnown RBP5.73□□□□□ -1.49
SNX1-205ENST00000559339 TMPOP42166 694 aaKnown RBP5.73□□□□□ -1.49
SNX1-205ENST00000559339 CALD1Q05682 793 aaKnown RBP5.73□□□□□ -1.49
SNX1-205ENST00000559339 NEUROD2Q15784 382 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 GPR162Q16538 588 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 INTS5Q6P9B9 1019 aaKnown RBP5.73□□□□□ -1.49
SNX1-205ENST00000559339 SMIM5Q71RC9 77 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 AMIGO3Q86WK7 504 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 CCDC146Q8IYE0 955 aa5.73□□□□□ -1.49
SNX1-205ENST00000559339 USP42Q9H9J4 1324 aaKnown RBP5.73□□□□□ -1.49
SNX1-205ENST00000559339 CASZ1Q86V15 1759 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 UTRNP46939 3433 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 NPHP1O15259 732 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 IL6STP40189 918 aaPredicted RBP5.72□□□□□ -1.49
SNX1-205ENST00000559339 PELP1Q8IZL8 1130 aaKnown RBP5.72□□□□□ -1.49
SNX1-205ENST00000559339 MRS2Q9HD23 443 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 BABAM1Q9NWV8 329 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 MIS18AQ9NYP9 233 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 TSPYL4Q9UJ04 414 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 ZBTB1Q9Y2K1 713 aa5.72□□□□□ -1.49
SNX1-205ENST00000559339 SOS1Q07889 1333 aaPredicted RBP5.72□□□□□ -1.49
SNX1-205ENST00000559339 COL15A1P39059 1388 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 SCN11AQ9UI33 1791 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 KCNQ3O43525 872 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 GRIN3BO60391 1043 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 CAPN15O75808 1086 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 EIF5P55010 431 aaKnown RBP5.71□□□□□ -1.5
SNX1-205ENST00000559339 TGFB2P61812 414 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 USPL1Q5W0Q7 1092 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 THUMPD2Q9BTF0 503 aaKnown RBP5.71□□□□□ -1.5
SNX1-205ENST00000559339 NARFQ9UHQ1 456 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 ZNF652Q9Y2D9 606 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 RRP7AQ9Y3A4 280 aaKnown RBP5.71□□□□□ -1.5
SNX1-205ENST00000559339 USP16Q9Y5T5 823 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 ZNF831Q5JPB2 1677 aa5.71□□□□□ -1.5
SNX1-205ENST00000559339 KCPQ6ZWJ8 1503 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 GIGYF1O75420 1035 aaPredicted RBP5.7□□□□□ -1.5
SNX1-205ENST00000559339 A1BGP04217 495 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 EIF4A1P60842 406 aaKnown RBP5.7□□□□□ -1.5
SNX1-205ENST00000559339 FKBP8Q14318 412 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 DZIP3Q86Y13 1208 aaKnown RBP5.7□□□□□ -1.5
SNX1-205ENST00000559339 NLGN2Q8NFZ4 835 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 SETDB2Q96T68 719 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 CHMP4AQ9BY43 222 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 SRP68Q9UHB9 627 aaKnown RBP5.7□□□□□ -1.5
SNX1-205ENST00000559339 TBC1D2BQ9UPU7 963 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 LAS1LQ9Y4W2 734 aaKnown RBP5.7□□□□□ -1.5
SNX1-205ENST00000559339 GOLGB1Q14789 3259 aaKnown RBP5.7□□□□□ -1.5
SNX1-205ENST00000559339 QSER1Q2KHR3 1735 aa5.7□□□□□ -1.5
SNX1-205ENST00000559339 TAF1LQ8IZX4 1826 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 ADAMTS7Q9UKP4 1686 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 APAF1O14727 1248 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 RGL2O15211 777 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 YY1P25490 414 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 NFIXQ14938 502 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 CLEC4GQ6UXB4 293 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 BICDL1Q6ZP65 573 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 CFAP44Q96MT7 982 aa5.69□□□□□ -1.5
SNX1-205ENST00000559339 ZNF219Q9P2Y4 722 aaPredicted RBP5.69□□□□□ -1.5
SNX1-205ENST00000559339 A0A0G2JLW4 131 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 PRAMEF22A3QJZ6 481 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 POLRMTO00411 1230 aaKnown RBP5.68□□□□□ -1.5
SNX1-205ENST00000559339 CHL1O00533 1208 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 SERPINB2P05120 415 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 MYL6BP14649 208 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 EIF2S2P20042 333 aaKnown RBP5.68□□□□□ -1.5
SNX1-205ENST00000559339 GTF2E1P29083 439 aaPredicted RBP5.68□□□□□ -1.5
SNX1-205ENST00000559339 TM4SF1P30408 202 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 PIP4K2AP48426 406 aaPredicted RBP5.68□□□□□ -1.5
SNX1-205ENST00000559339 GNAI1P63096 354 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 KIF6Q6ZMV9 814 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 NGEFQ8N5V2 710 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 PIM2Q9P1W9 311 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 TRIM35Q9UPQ4 493 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 UBR3Q6ZT12 1888 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 ERBB4Q15303 1308 aa5.68□□□□□ -1.5
SNX1-205ENST00000559339 CARMIL3Q8ND23 1372 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 NBPF26B4DH59 902 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 ERVV-1B6SEH8 477 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 H0YIN7 160 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 CAMTA2O94983 1202 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 HOXB7P09629 217 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 PDE6BP35913 854 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 ST5P78524 1137 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 DDR1Q08345 913 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 CCDC27Q2M243 656 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 TBC1D9BQ66K14 1250 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 NBPF10Q6P3W6 841 aaKnown RBP5.67□□□□□ -1.5
SNX1-205ENST00000559339 TPTE2Q6XPS3 522 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 NBPF5PQ86XG9 351 aaPredicted RBP5.67□□□□□ -1.5
SNX1-205ENST00000559339 FAM9BQ8IZU0 186 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 NBPF15Q8N660 670 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 CNBD1Q8NA66 436 aa5.67□□□□□ -1.5
SNX1-205ENST00000559339 SPINK5Q9NQ38 1064 aaPredicted RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms