RNA–Protein interactions for RNA: ENST00000558955.2

PKNOX1-208, Transcript of PBX/knotted 1 homeobox 1, humanhuman

TSL 2

Gene PKNOX1, Length 629 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-208ENST00000558955 STARD3NLO95772 234 aa16.53■□□□□ 0.24
PKNOX1-208ENST00000558955 NLGN1Q8N2Q7 840 aa16.53■□□□□ 0.24
PKNOX1-208ENST00000558955 THUMPD2Q9BTF0 503 aaKnown RBP16.53■□□□□ 0.24
PKNOX1-208ENST00000558955 MIS18AQ9NYP9 233 aa16.53■□□□□ 0.24
PKNOX1-208ENST00000558955 USP42Q9H9J4 1324 aaKnown RBP16.52■□□□□ 0.24
PKNOX1-208ENST00000558955 CANXP27824 592 aaKnown RBP16.52■□□□□ 0.24
PKNOX1-208ENST00000558955 TAF7Q15545 349 aaPredicted RBP16.52■□□□□ 0.24
PKNOX1-208ENST00000558955 CCDC146Q8IYE0 955 aa16.52■□□□□ 0.24
PKNOX1-208ENST00000558955 CD2APQ9Y5K6 639 aa16.52■□□□□ 0.24
PKNOX1-208ENST00000558955 PRAMEF22A3QJZ6 481 aa16.51■□□□□ 0.23
PKNOX1-208ENST00000558955 FKBP8Q14318 412 aa16.51■□□□□ 0.23
PKNOX1-208ENST00000558955 PELP1Q8IZL8 1130 aaKnown RBP16.51■□□□□ 0.23
PKNOX1-208ENST00000558955 TEX13AQ9BXU3 409 aaPredicted RBP16.51■□□□□ 0.23
PKNOX1-208ENST00000558955 COL15A1P39059 1388 aa16.51■□□□□ 0.23
PKNOX1-208ENST00000558955 WDR43Q15061 677 aaKnown RBP eCLIP16.5■□□□□ 0.23
PKNOX1-208ENST00000558955 GPR162Q16538 588 aa16.5■□□□□ 0.23
PKNOX1-208ENST00000558955 USPL1Q5W0Q7 1092 aa16.5■□□□□ 0.23
PKNOX1-208ENST00000558955 ADAMTS8Q9UP79 889 aa16.5■□□□□ 0.23
PKNOX1-208ENST00000558955 ZPR1O75312 459 aa16.49■□□□□ 0.23
PKNOX1-208ENST00000558955 A1BGP04217 495 aa16.49■□□□□ 0.23
PKNOX1-208ENST00000558955 TMPOP42166 694 aaKnown RBP16.49■□□□□ 0.23
PKNOX1-208ENST00000558955 RIPK4P57078 832 aa16.49■□□□□ 0.23
PKNOX1-208ENST00000558955 USP16Q9Y5T5 823 aa16.49■□□□□ 0.23
PKNOX1-208ENST00000558955 EIF5P55010 431 aaKnown RBP16.48■□□□□ 0.23
PKNOX1-208ENST00000558955 NARFQ9UHQ1 456 aa16.48■□□□□ 0.23
PKNOX1-208ENST00000558955 RRP7AQ9Y3A4 280 aaKnown RBP16.48■□□□□ 0.23
PKNOX1-208ENST00000558955 PARP3Q9Y6F1 533 aa16.48■□□□□ 0.23
PKNOX1-208ENST00000558955 UTRNP46939 3433 aa16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 SNRPA1P09661 255 aaKnown RBP16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 YBX3P16989 372 aaKnown RBP eCLIP16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 YY1P25490 414 aa16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 PIP4K2AP48426 406 aaPredicted RBP16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 DDR1Q08345 913 aa16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 ZNF330Q9Y3S2 320 aaPredicted RBP16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 GOLGB1Q14789 3259 aaKnown RBP16.47■□□□□ 0.23
PKNOX1-208ENST00000558955 NEUROD2Q15784 382 aa16.46■□□□□ 0.23
PKNOX1-208ENST00000558955 CCDC184Q52MB2 194 aa16.46■□□□□ 0.23
PKNOX1-208ENST00000558955 RUNDC1Q96C34 613 aa16.46■□□□□ 0.23
PKNOX1-208ENST00000558955 BCL2L12Q9HB09 334 aa16.46■□□□□ 0.23
PKNOX1-208ENST00000558955 WWC3Q9ULE0 1092 aa16.46■□□□□ 0.23
PKNOX1-208ENST00000558955 TM4SF1P30408 202 aa16.45■□□□□ 0.22
PKNOX1-208ENST00000558955 PNISRQ8TF01 805 aaKnown RBP16.45■□□□□ 0.22
PKNOX1-208ENST00000558955 KDM3BQ7LBC6 1761 aa16.45■□□□□ 0.22
PKNOX1-208ENST00000558955 C10orf71Q711Q0 1435 aa16.45■□□□□ 0.22
PKNOX1-208ENST00000558955 POLRMTO00411 1230 aaKnown RBP16.44■□□□□ 0.22
PKNOX1-208ENST00000558955 IL6STP40189 918 aaPredicted RBP16.44■□□□□ 0.22
PKNOX1-208ENST00000558955 TBC1D2BQ9UPU7 963 aa16.44■□□□□ 0.22
PKNOX1-208ENST00000558955 KIF13BQ9NQT8 1826 aa16.43■□□□□ 0.22
PKNOX1-208ENST00000558955 A0A087WZG4 1122 aa16.43■□□□□ 0.22
PKNOX1-208ENST00000558955 EIF4A1P60842 406 aaKnown RBP16.43■□□□□ 0.22
PKNOX1-208ENST00000558955 NFIXQ14938 502 aa16.43■□□□□ 0.22
PKNOX1-208ENST00000558955 PXDNLA1KZ92 1463 aa16.42■□□□□ 0.22
PKNOX1-208ENST00000558955 GIGYF1O75420 1035 aaPredicted RBP16.42■□□□□ 0.22
PKNOX1-208ENST00000558955 LMOD3Q0VAK6 560 aa16.42■□□□□ 0.22
PKNOX1-208ENST00000558955 TRIM35Q9UPQ4 493 aa16.42■□□□□ 0.22
PKNOX1-208ENST00000558955 KIAA1551Q9HCM1 1747 aa16.42■□□□□ 0.22
PKNOX1-208ENST00000558955 A0A0G2JLW4 131 aa16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 NBPF26B4DH59 902 aa16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 TGFB2P61812 414 aa16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 NBPF10Q6P3W6 841 aaKnown RBP16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 BICDL1Q6ZP65 573 aa16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 NBPF15Q8N660 670 aa16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 TSPYL4Q9UJ04 414 aa16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 N4BP2Q86UW6 1770 aaPredicted RBP16.41■□□□□ 0.22
PKNOX1-208ENST00000558955 CAMTA2O94983 1202 aa16.4■□□□□ 0.22
PKNOX1-208ENST00000558955 TBC1D9BQ66K14 1250 aa16.4■□□□□ 0.22
PKNOX1-208ENST00000558955 NPM2Q86SE8 214 aaKnown RBP16.4■□□□□ 0.22
PKNOX1-208ENST00000558955 SCN7AQ01118 1682 aa16.4■□□□□ 0.22
PKNOX1-208ENST00000558955 ANP32CO43423 234 aa16.39■□□□□ 0.21
PKNOX1-208ENST00000558955 GRIN3BO60391 1043 aa16.39■□□□□ 0.21
PKNOX1-208ENST00000558955 DPEP1P16444 411 aa16.39■□□□□ 0.21
PKNOX1-208ENST00000558955 DZIP3Q86Y13 1208 aaKnown RBP16.39■□□□□ 0.21
PKNOX1-208ENST00000558955 CHD4Q14839 1912 aa16.39■□□□□ 0.21
PKNOX1-208ENST00000558955 LAMB4A4D0S4 1761 aa16.38■□□□□ 0.21
PKNOX1-208ENST00000558955 AFDNP55196 1824 aaKnown RBP16.38■□□□□ 0.21
PKNOX1-208ENST00000558955 APAF1O14727 1248 aa16.38■□□□□ 0.21
PKNOX1-208ENST00000558955 SERPINB2P05120 415 aa16.38■□□□□ 0.21
PKNOX1-208ENST00000558955 KCNA3P22001 575 aa16.37■□□□□ 0.21
PKNOX1-208ENST00000558955 BABAM1Q9NWV8 329 aa16.37■□□□□ 0.21
PKNOX1-208ENST00000558955 LAS1LQ9Y4W2 734 aaKnown RBP16.37■□□□□ 0.21
PKNOX1-208ENST00000558955 NRXN2Q9P2S2 1712 aa16.36■□□□□ 0.21
PKNOX1-208ENST00000558955 BCORQ6W2J9 1755 aa16.36■□□□□ 0.21
PKNOX1-208ENST00000558955 CHL1O00533 1208 aa16.35■□□□□ 0.21
PKNOX1-208ENST00000558955 CHRNA5P30532 468 aa16.35■□□□□ 0.21
PKNOX1-208ENST00000558955 NGEFQ8N5V2 710 aa16.35■□□□□ 0.21
PKNOX1-208ENST00000558955 BCS1LQ9Y276 419 aa16.35■□□□□ 0.21
PKNOX1-208ENST00000558955 KRT24Q2M2I5 525 aa16.34■□□□□ 0.21
PKNOX1-208ENST00000558955 CCDC24Q8N4L8 307 aa16.34■□□□□ 0.21
PKNOX1-208ENST00000558955 MRS2Q9HD23 443 aa16.34■□□□□ 0.21
PKNOX1-208ENST00000558955 CARMIL3Q8ND23 1372 aa16.34■□□□□ 0.21
PKNOX1-208ENST00000558955 SENP3-EIF4A1A0A087X0R7 540 aa16.33■□□□□ 0.2
PKNOX1-208ENST00000558955 MYL6BP14649 208 aa16.33■□□□□ 0.2
PKNOX1-208ENST00000558955 EIF2S2P20042 333 aaKnown RBP16.33■□□□□ 0.2
PKNOX1-208ENST00000558955 SETDB2Q96T68 719 aa16.33■□□□□ 0.2
PKNOX1-208ENST00000558955 BRCA1P38398 1863 aaKnown RBP16.33■□□□□ 0.2
PKNOX1-208ENST00000558955 HLFQ16534 295 aa16.32■□□□□ 0.2
PKNOX1-208ENST00000558955 CLEC4GQ6UXB4 293 aa16.32■□□□□ 0.2
PKNOX1-208ENST00000558955 TTLL7Q6ZT98 887 aa16.32■□□□□ 0.2
PKNOX1-208ENST00000558955 ZNF784Q8NCA9 323 aaPredicted RBP16.32■□□□□ 0.2
PKNOX1-208ENST00000558955 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms