RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 C1orf216Q8TAB5 229 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 ARXQ96QS3 562 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 CUEDC1Q9NWM3 386 aaPredicted RBP7.48□□□□□ -1.21
VPS13C-207ENST00000558919 CABP1Q9NZU7 370 aa7.48□□□□□ -1.21
VPS13C-207ENST00000558919 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-207ENST00000558919 CDC14CA4D256 554 aa7.47□□□□□ -1.21
VPS13C-207ENST00000558919 MSX1P28360 303 aa7.47□□□□□ -1.21
VPS13C-207ENST00000558919 GMPRP36959 345 aa7.47□□□□□ -1.21
VPS13C-207ENST00000558919 LBRQ14739 615 aaKnown RBP7.47□□□□□ -1.21
VPS13C-207ENST00000558919 DBN1Q16643 649 aa7.47□□□□□ -1.21
VPS13C-207ENST00000558919 GAS2L2Q8NHY3 880 aa7.47□□□□□ -1.21
VPS13C-207ENST00000558919 FAM200AQ8TCP9 573 aa7.47□□□□□ -1.21
VPS13C-207ENST00000558919 PBXIP1Q96AQ6 731 aa7.47□□□□□ -1.21
VPS13C-207ENST00000558919 ATG7O95352 703 aa7.46□□□□□ -1.22
VPS13C-207ENST00000558919 NOS2P35228 1153 aa7.46□□□□□ -1.22
VPS13C-207ENST00000558919 NBPF1Q3BBV0 1214 aa7.46□□□□□ -1.22
VPS13C-207ENST00000558919 GPR161Q8N6U8 529 aaKnown RBP7.46□□□□□ -1.22
VPS13C-207ENST00000558919 ZNF837Q96EG3 531 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-207ENST00000558919 TSPAN10Q9H1Z9 355 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-207ENST00000558919 ZDHHC3Q9NYG2 299 aa7.46□□□□□ -1.22
VPS13C-207ENST00000558919 NOVA2Q9UNW9 492 aaKnown RBP7.46□□□□□ -1.22
VPS13C-207ENST00000558919 CSB-PGBD3P0DP91 1061 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 PSMA6P60900 246 aaKnown RBP7.45□□□□□ -1.22
VPS13C-207ENST00000558919 POTEAQ6S8J7 498 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 PGBD3Q8N328 593 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 ZDHHC1Q8WTX9 485 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 L3MBTL2Q969R5 705 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 AIDAQ96BJ3 306 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 HINFPQ9BQA5 517 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 NUCKS1Q9H1E3 243 aaKnown RBP7.45□□□□□ -1.22
VPS13C-207ENST00000558919 CRISPLD1Q9H336 500 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 GPAMQ9HCL2 828 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 CHMP3Q9Y3E7 222 aa7.45□□□□□ -1.22
VPS13C-207ENST00000558919 SERTM1A2A2V5 107 aa7.44□□□□□ -1.22
VPS13C-207ENST00000558919 TATP17735 454 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-207ENST00000558919 ATP4AP20648 1035 aa7.44□□□□□ -1.22
VPS13C-207ENST00000558919 HIRAP54198 1017 aaPredicted RBP7.44□□□□□ -1.22
VPS13C-207ENST00000558919 TBCELQ5QJ74 424 aa7.44□□□□□ -1.22
VPS13C-207ENST00000558919 FOXR1Q6PIV2 292 aa7.44□□□□□ -1.22
VPS13C-207ENST00000558919 STAG2Q8N3U4 1231 aa7.44□□□□□ -1.22
VPS13C-207ENST00000558919 ATAD2Q6PL18 1390 aa7.44□□□□□ -1.22
VPS13C-207ENST00000558919 EFHC2Q5JST6 749 aa7.43□□□□□ -1.22
VPS13C-207ENST00000558919 RUBCNLQ9H714 662 aa7.43□□□□□ -1.22
VPS13C-207ENST00000558919 ZNF232Q9UNY5 417 aa7.43□□□□□ -1.22
VPS13C-207ENST00000558919 PARP3Q9Y6F1 533 aa7.43□□□□□ -1.22
VPS13C-207ENST00000558919 EML1O00423 815 aa7.42□□□□□ -1.22
VPS13C-207ENST00000558919 C21orf2O43822 256 aa7.42□□□□□ -1.22
VPS13C-207ENST00000558919 PPP1R12BO60237 982 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-207ENST00000558919 PPP1R15AO75807 674 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-207ENST00000558919 THBS1P07996 1170 aa7.42□□□□□ -1.22
VPS13C-207ENST00000558919 IGFBP4P22692 258 aa7.42□□□□□ -1.22
VPS13C-207ENST00000558919 SWI5Q1ZZU3 235 aa7.42□□□□□ -1.22
VPS13C-207ENST00000558919 SCG3Q8WXD2 468 aaKnown RBP7.42□□□□□ -1.22
VPS13C-207ENST00000558919 COL25A1Q9BXS0 654 aaPredicted RBP7.42□□□□□ -1.22
VPS13C-207ENST00000558919 ZMIZ1Q9ULJ6 1067 aa7.42□□□□□ -1.22
VPS13C-207ENST00000558919 ACIN1Q9UKV3 1341 aaKnown RBP7.42□□□□□ -1.22
VPS13C-207ENST00000558919 SUPT5HO00267 1087 aaKnown RBP7.41□□□□□ -1.22
VPS13C-207ENST00000558919 TXLNAP40222 546 aa7.41□□□□□ -1.22
VPS13C-207ENST00000558919 C1orf53Q5VUE5 145 aa7.41□□□□□ -1.22
VPS13C-207ENST00000558919 NLRP8Q86W28 1048 aa7.41□□□□□ -1.22
VPS13C-207ENST00000558919 GTPBP3Q969Y2 492 aaKnown RBP7.41□□□□□ -1.22
VPS13C-207ENST00000558919 TRERF1Q96PN7 1200 aa7.41□□□□□ -1.22
VPS13C-207ENST00000558919 C2orf49Q9BVC5 232 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-207ENST00000558919 CFHR5Q9BXR6 569 aa7.41□□□□□ -1.22
VPS13C-207ENST00000558919 GPC6Q9Y625 555 aaPredicted RBP7.41□□□□□ -1.22
VPS13C-207ENST00000558919 INSM1Q01101 510 aaPredicted RBP7.4□□□□□ -1.22
VPS13C-207ENST00000558919 UBAP2LQ14157 1087 aaKnown RBP7.4□□□□□ -1.22
VPS13C-207ENST00000558919 ARSJQ5FYB0 599 aaPredicted RBP7.4□□□□□ -1.22
VPS13C-207ENST00000558919 FIGNL1Q6PIW4 674 aa7.4□□□□□ -1.22
VPS13C-207ENST00000558919 ZIC5Q96T25 663 aa7.4□□□□□ -1.22
VPS13C-207ENST00000558919 A0A1W2PNR3 127 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 WEE1P30291 646 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 KRT76Q01546 638 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 FAM69CQ0P6D2 419 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 RNFT1Q5M7Z0 435 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 SH3PXD2AQ5TCZ1 1133 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 BICDL1Q6ZP65 573 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 STK32AQ8WU08 396 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 CNTNAP3BQ96NU0 1288 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 CNTNAP3Q9BZ76 1288 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 PHF24Q9UPV7 400 aa7.39□□□□□ -1.23
VPS13C-207ENST00000558919 GPR25O00155 361 aa7.38□□□□□ -1.23
VPS13C-207ENST00000558919 FOXO3O43524 673 aa7.38□□□□□ -1.23
VPS13C-207ENST00000558919 GAS6Q14393 721 aa7.38□□□□□ -1.23
VPS13C-207ENST00000558919 CHMP7Q8WUX9 453 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-207ENST00000558919 C7orf43Q8WVR3 580 aa7.38□□□□□ -1.23
VPS13C-207ENST00000558919 HCN4Q9Y3Q4 1203 aa7.38□□□□□ -1.23
VPS13C-207ENST00000558919 LGR5O75473 907 aa7.37□□□□□ -1.23
VPS13C-207ENST00000558919 TMEM164Q5U3C3 297 aa7.37□□□□□ -1.23
VPS13C-207ENST00000558919 ZCCHC2Q9C0B9 1178 aaKnown RBP7.37□□□□□ -1.23
VPS13C-207ENST00000558919 PHACTR1Q9C0D0 580 aa7.37□□□□□ -1.23
VPS13C-207ENST00000558919 MBIPQ9NS73 344 aa7.37□□□□□ -1.23
VPS13C-207ENST00000558919 NDFIP2Q9NV92 336 aa7.37□□□□□ -1.23
VPS13C-207ENST00000558919 ATXN7L1Q9ULK2 861 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-207ENST00000558919 PCDHGC4Q9Y5F7 938 aa7.37□□□□□ -1.23
VPS13C-207ENST00000558919 GJA3Q9Y6H8 435 aa7.37□□□□□ -1.23
VPS13C-207ENST00000558919 SRSF11Q05519 484 aaKnown RBP7.36□□□□□ -1.23
VPS13C-207ENST00000558919 SAMD5Q5TGI4 173 aa7.36□□□□□ -1.23
VPS13C-207ENST00000558919 ALDH16A1Q8IZ83 802 aa7.36□□□□□ -1.23
VPS13C-207ENST00000558919 RHPN1Q8TCX5 695 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms