RNA–Protein interactions for RNA: ENST00000558575.1

LINC01220-201, Transcript of long intergenic non-protein coding RNA 1220, humanhuman

TSL 1 (best) BASIC

Gene LINC01220, Length 715 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01220-201ENST00000558575 DCAF5Q96JK2 942 aa20.59■□□□□ 0.89
LINC01220-201ENST00000558575 MRS2Q9HD23 443 aa20.59■□□□□ 0.89
LINC01220-201ENST00000558575 KDM6AO15550 1401 aaPredicted RBP20.59■□□□□ 0.89
LINC01220-201ENST00000558575 GAS2L2Q8NHY3 880 aa20.58■□□□□ 0.89
LINC01220-201ENST00000558575 HSP90AB1P08238 724 aaKnown RBP20.57■□□□□ 0.88
LINC01220-201ENST00000558575 WDR43Q15061 677 aaKnown RBP eCLIP20.57■□□□□ 0.88
LINC01220-201ENST00000558575 RNMTO43148 476 aaKnown RBP20.56■□□□□ 0.88
LINC01220-201ENST00000558575 CCDC146Q8IYE0 955 aa20.56■□□□□ 0.88
LINC01220-201ENST00000558575 SMC1BQ8NDV3 1235 aa20.56■□□□□ 0.88
LINC01220-201ENST00000558575 IL17REQ8NFR9 667 aa20.56■□□□□ 0.88
LINC01220-201ENST00000558575 RNF181Q9P0P0 153 aa20.56■□□□□ 0.88
LINC01220-201ENST00000558575 ERVV-2B6SEH9 535 aa20.55■□□□□ 0.88
LINC01220-201ENST00000558575 GNAT3A8MTJ3 354 aa20.54■□□□□ 0.88
LINC01220-201ENST00000558575 PNNQ9H307 717 aaKnown RBP20.54■□□□□ 0.88
LINC01220-201ENST00000558575 ASAP1Q9ULH1 1129 aa20.54■□□□□ 0.88
LINC01220-201ENST00000558575 ATP6V1AP38606 617 aa20.53■□□□□ 0.88
LINC01220-201ENST00000558575 CCDC87Q9NVE4 849 aa20.53■□□□□ 0.88
LINC01220-201ENST00000558575 DLEC1Q9Y238 1755 aa20.53■□□□□ 0.88
LINC01220-201ENST00000558575 NFE2L2Q16236 605 aa20.52■□□□□ 0.88
LINC01220-201ENST00000558575 MIER1Q8N108 512 aa20.52■□□□□ 0.88
LINC01220-201ENST00000558575 NLGN1Q8N2Q7 840 aa20.52■□□□□ 0.88
LINC01220-201ENST00000558575 NFATC2IPQ8NCF5 419 aa20.52■□□□□ 0.88
LINC01220-201ENST00000558575 GYS1P13807 737 aa20.51■□□□□ 0.87
LINC01220-201ENST00000558575 CABP4P57796 275 aa20.51■□□□□ 0.87
LINC01220-201ENST00000558575 RUNDC1Q96C34 613 aa20.51■□□□□ 0.87
LINC01220-201ENST00000558575 TMOD3Q9NYL9 352 aa20.51■□□□□ 0.87
LINC01220-201ENST00000558575 AFDNP55196 1824 aaKnown RBP20.5■□□□□ 0.87
LINC01220-201ENST00000558575 DCTN1Q14203 1278 aa20.5■□□□□ 0.87
LINC01220-201ENST00000558575 TMPOP42166 694 aaKnown RBP20.49■□□□□ 0.87
LINC01220-201ENST00000558575 TRAPPC3LQ5T215 181 aa20.49■□□□□ 0.87
LINC01220-201ENST00000558575 ARHGEF1Q92888 912 aaKnown RBP20.49■□□□□ 0.87
LINC01220-201ENST00000558575 SLC52A2Q9HAB3 445 aa20.49■□□□□ 0.87
LINC01220-201ENST00000558575 ATG3Q9NT62 314 aa20.49■□□□□ 0.87
LINC01220-201ENST00000558575 PIM2Q9P1W9 311 aa20.49■□□□□ 0.87
LINC01220-201ENST00000558575 MAPK8IP3Q9UPT6 1336 aa20.49■□□□□ 0.87
LINC01220-201ENST00000558575 ADAMTS7Q9UKP4 1686 aa20.48■□□□□ 0.87
LINC01220-201ENST00000558575 CCER2I3L3R5 266 aa20.48■□□□□ 0.87
LINC01220-201ENST00000558575 HTATSF1O43719 755 aaKnown RBP20.48■□□□□ 0.87
LINC01220-201ENST00000558575 NEFMP07197 916 aa20.48■□□□□ 0.87
LINC01220-201ENST00000558575 MCM10Q7L590 875 aa20.48■□□□□ 0.87
LINC01220-201ENST00000558575 RRP7AQ9Y3A4 280 aaKnown RBP20.48■□□□□ 0.87
LINC01220-201ENST00000558575 RTCBQ9Y3I0 505 aaKnown RBP20.48■□□□□ 0.87
LINC01220-201ENST00000558575 DICER1Q9UPY3 1922 aaKnown RBP20.48■□□□□ 0.87
LINC01220-201ENST00000558575 CEMIPQ8WUJ3 1361 aa20.47■□□□□ 0.87
LINC01220-201ENST00000558575 DALRD3Q5D0E6 543 aaKnown RBP20.47■□□□□ 0.87
LINC01220-201ENST00000558575 SLC4A9Q96Q91 983 aa20.47■□□□□ 0.87
LINC01220-201ENST00000558575 PARP3Q9Y6F1 533 aa20.47■□□□□ 0.87
LINC01220-201ENST00000558575 APAF1O14727 1248 aa20.46■□□□□ 0.87
LINC01220-201ENST00000558575 RIPK4P57078 832 aa20.46■□□□□ 0.87
LINC01220-201ENST00000558575 VIRMAQ69YN4 1812 aaKnown RBP20.45■□□□□ 0.86
LINC01220-201ENST00000558575 TJP1Q07157 1748 aa20.44■□□□□ 0.86
LINC01220-201ENST00000558575 SCN11AQ9UI33 1791 aa20.44■□□□□ 0.86
LINC01220-201ENST00000558575 CHRNA5P30532 468 aa20.44■□□□□ 0.86
LINC01220-201ENST00000558575 RASSF7Q02833 373 aa20.44■□□□□ 0.86
LINC01220-201ENST00000558575 NEUROD2Q15784 382 aa20.44■□□□□ 0.86
LINC01220-201ENST00000558575 FAM9BQ8IZU0 186 aa20.44■□□□□ 0.86
LINC01220-201ENST00000558575 RTF1Q92541 710 aaKnown RBP20.44■□□□□ 0.86
LINC01220-201ENST00000558575 THUMPD2Q9BTF0 503 aaKnown RBP20.44■□□□□ 0.86
LINC01220-201ENST00000558575 TRIM35Q9UPQ4 493 aa20.44■□□□□ 0.86
LINC01220-201ENST00000558575 ADRA2BP18089 450 aa20.43■□□□□ 0.86
LINC01220-201ENST00000558575 SLC39A6Q13433 755 aa20.43■□□□□ 0.86
LINC01220-201ENST00000558575 MRC1P22897 1456 aa20.43■□□□□ 0.86
LINC01220-201ENST00000558575 DDR1Q08345 913 aa20.42■□□□□ 0.86
LINC01220-201ENST00000558575 NRXN2Q9P2S2 1712 aa20.41■□□□□ 0.86
LINC01220-201ENST00000558575 VEGFAP15692 232 aaPredicted RBP20.41■□□□□ 0.86
LINC01220-201ENST00000558575 RFC4P35249 363 aa20.41■□□□□ 0.86
LINC01220-201ENST00000558575 TEFQ10587 303 aa20.41■□□□□ 0.86
LINC01220-201ENST00000558575 CNTNAP4Q9C0A0 1308 aa20.41■□□□□ 0.86
LINC01220-201ENST00000558575 ZC3H4Q9UPT8 1303 aaKnown RBP20.41■□□□□ 0.86
LINC01220-201ENST00000558575 GLTPD2A6NH11 291 aa20.4■□□□□ 0.86
LINC01220-201ENST00000558575 FOXN1O15353 648 aa20.4■□□□□ 0.86
LINC01220-201ENST00000558575 RPS6KA4O75676 772 aa20.4■□□□□ 0.86
LINC01220-201ENST00000558575 RC3H1Q5TC82 1133 aaKnown RBP20.4■□□□□ 0.86
LINC01220-201ENST00000558575 KCNQ3O43525 872 aa20.39■□□□□ 0.85
LINC01220-201ENST00000558575 SRP68Q9UHB9 627 aaKnown RBP20.39■□□□□ 0.85
LINC01220-201ENST00000558575 POTECB2RU33 542 aa20.38■□□□□ 0.85
LINC01220-201ENST00000558575 MIS18AQ9NYP9 233 aa20.38■□□□□ 0.85
LINC01220-201ENST00000558575 MKRN1Q9UHC7 482 aaKnown RBP20.38■□□□□ 0.85
LINC01220-201ENST00000558575 DLG5Q8TDM6 1919 aa20.37■□□□□ 0.85
LINC01220-201ENST00000558575 FER1L6Q2WGJ9 1857 aa20.37■□□□□ 0.85
LINC01220-201ENST00000558575 PTCD1O75127 700 aaKnown RBP20.37■□□□□ 0.85
LINC01220-201ENST00000558575 FKBP8Q14318 412 aa20.37■□□□□ 0.85
LINC01220-201ENST00000558575 TAF7Q15545 349 aaPredicted RBP20.37■□□□□ 0.85
LINC01220-201ENST00000558575 RBM42Q9BTD8 480 aaKnown RBP20.37■□□□□ 0.85
LINC01220-201ENST00000558575 BTBD11A6QL63 1104 aa20.36■□□□□ 0.85
LINC01220-201ENST00000558575 CACNA1SQ13698 1873 aa20.35■□□□□ 0.85
LINC01220-201ENST00000558575 ZNF790Q6PG37 636 aa20.35■□□□□ 0.85
LINC01220-201ENST00000558575 USP42Q9H9J4 1324 aaKnown RBP20.34■□□□□ 0.85
LINC01220-201ENST00000558575 LMNB1P20700 586 aa20.34■□□□□ 0.85
LINC01220-201ENST00000558575 LMOD3Q0VAK6 560 aa20.34■□□□□ 0.85
LINC01220-201ENST00000558575 ZNF496Q96IT1 587 aaPredicted RBP20.34■□□□□ 0.85
LINC01220-201ENST00000558575 PRDM10Q9NQV6 1147 aa20.34■□□□□ 0.85
LINC01220-201ENST00000558575 ANKRD31Q8N7Z5 1873 aa20.34■□□□□ 0.85
LINC01220-201ENST00000558575 FAM161AQ3B820 660 aa20.33■□□□□ 0.85
LINC01220-201ENST00000558575 CREBZFQ9NS37 354 aa20.33■□□□□ 0.85
LINC01220-201ENST00000558575 SIPA1L3O60292 1781 aaPredicted RBP20.33■□□□□ 0.84
LINC01220-201ENST00000558575 POLRMTO00411 1230 aaKnown RBP20.32■□□□□ 0.84
LINC01220-201ENST00000558575 NCBP3Q53F19 620 aaKnown RBP20.31■□□□□ 0.84
LINC01220-201ENST00000558575 COL11A2P13942 1736 aaPredicted RBP20.3■□□□□ 0.84
LINC01220-201ENST00000558575 CCDC27Q2M243 656 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms