RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 STK32BQ9NY57 414 aa13.55□□□□□ -0.24
LRRC28-204ENST00000558172 CNTNAP4Q9C0A0 1308 aa13.55□□□□□ -0.24
LRRC28-204ENST00000558172 UBR3Q6ZT12 1888 aa13.55□□□□□ -0.24
LRRC28-204ENST00000558172 AKT1S1Q96B36 256 aa13.54□□□□□ -0.24
LRRC28-204ENST00000558172 USP16Q9Y5T5 823 aa13.54□□□□□ -0.24
LRRC28-204ENST00000558172 SLC15A2Q16348 729 aa13.53□□□□□ -0.24
LRRC28-204ENST00000558172 DUSP27Q5VZP5 1158 aa13.53□□□□□ -0.24
LRRC28-204ENST00000558172 CDCA7LQ96GN5 454 aa13.53□□□□□ -0.24
LRRC28-204ENST00000558172 AK7Q96M32 723 aa13.53□□□□□ -0.24
LRRC28-204ENST00000558172 TUBGCP6Q96RT7 1819 aa13.53□□□□□ -0.24
LRRC28-204ENST00000558172 PRAMEF22A3QJZ6 481 aa13.52□□□□□ -0.25
LRRC28-204ENST00000558172 CRKLP46109 303 aaKnown RBP13.52□□□□□ -0.25
LRRC28-204ENST00000558172 EXOSC9Q06265 439 aaKnown RBP13.52□□□□□ -0.25
LRRC28-204ENST00000558172 TWISTNBQ3B726 338 aaPredicted RBP13.52□□□□□ -0.25
LRRC28-204ENST00000558172 C8orf58Q8NAV2 365 aa13.52□□□□□ -0.25
LRRC28-204ENST00000558172 FLAD1Q8NFF5 587 aa13.52□□□□□ -0.25
LRRC28-204ENST00000558172 CCDC87Q9NVE4 849 aa13.52□□□□□ -0.25
LRRC28-204ENST00000558172 ERBB4Q15303 1308 aa13.52□□□□□ -0.25
LRRC28-204ENST00000558172 ELL2O00472 640 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-204ENST00000558172 RPS6KA4O75676 772 aa13.51□□□□□ -0.25
LRRC28-204ENST00000558172 EIF2S2P20042 333 aaKnown RBP13.51□□□□□ -0.25
LRRC28-204ENST00000558172 KRT24Q2M2I5 525 aa13.51□□□□□ -0.25
LRRC28-204ENST00000558172 INTS5Q6P9B9 1019 aaKnown RBP13.51□□□□□ -0.25
LRRC28-204ENST00000558172 TFCP2L1Q9NZI6 479 aa13.51□□□□□ -0.25
LRRC28-204ENST00000558172 RTCBQ9Y3I0 505 aaKnown RBP13.51□□□□□ -0.25
LRRC28-204ENST00000558172 GNPATO15228 680 aa13.5□□□□□ -0.25
LRRC28-204ENST00000558172 A1BGP04217 495 aa13.5□□□□□ -0.25
LRRC28-204ENST00000558172 CT47B1P0C2W7 299 aaPredicted RBP13.5□□□□□ -0.25
LRRC28-204ENST00000558172 ADRA2BP18089 450 aa13.5□□□□□ -0.25
LRRC28-204ENST00000558172 SSFA2P28290 1259 aa13.5□□□□□ -0.25
LRRC28-204ENST00000558172 IL6STP40189 918 aaPredicted RBP13.5□□□□□ -0.25
LRRC28-204ENST00000558172 ZNF827Q17R98 1081 aa13.5□□□□□ -0.25
LRRC28-204ENST00000558172 HDGFL1Q5TGJ6 251 aa13.5□□□□□ -0.25
LRRC28-204ENST00000558172 NPM2Q86SE8 214 aaKnown RBP13.5□□□□□ -0.25
LRRC28-204ENST00000558172 YTHDC1Q96MU7 727 aaKnown RBP13.5□□□□□ -0.25
LRRC28-204ENST00000558172 VAMP4O75379 141 aa13.49□□□□□ -0.25
LRRC28-204ENST00000558172 CANXP27824 592 aaKnown RBP13.49□□□□□ -0.25
LRRC28-204ENST00000558172 TRAPPC3LQ5T215 181 aa13.49□□□□□ -0.25
LRRC28-204ENST00000558172 CCDC30Q5VVM6 783 aa13.49□□□□□ -0.25
LRRC28-204ENST00000558172 TSPYL6Q8N831 410 aa13.49□□□□□ -0.25
LRRC28-204ENST00000558172 ZNF428Q96B54 188 aa13.49□□□□□ -0.25
LRRC28-204ENST00000558172 ANO8Q9HCE9 1232 aaPredicted RBP13.49□□□□□ -0.25
LRRC28-204ENST00000558172 ZBTB1Q9Y2K1 713 aa13.49□□□□□ -0.25
LRRC28-204ENST00000558172 A0A087WZG4 1122 aa13.48□□□□□ -0.25
LRRC28-204ENST00000558172 EIF5P55010 431 aaKnown RBP13.48□□□□□ -0.25
LRRC28-204ENST00000558172 DDX21Q9NR30 783 aaKnown RBP eCLIP13.48□□□□□ -0.25
LRRC28-204ENST00000558172 DBF4Q9UBU7 674 aaPredicted RBP13.48□□□□□ -0.25
LRRC28-204ENST00000558172 STK31Q9BXU1 1019 aa13.47□□□□□ -0.25
LRRC28-204ENST00000558172 PNPLA7Q6ZV29 1317 aa13.46□□□□□ -0.25
LRRC28-204ENST00000558172 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.46□□□□□ -0.25
LRRC28-204ENST00000558172 NBPF26B4DH59 902 aa13.46□□□□□ -0.25
LRRC28-204ENST00000558172 PDIA6Q15084 440 aa13.46□□□□□ -0.25
LRRC28-204ENST00000558172 NBPF10Q6P3W6 841 aaKnown RBP13.46□□□□□ -0.25
LRRC28-204ENST00000558172 NBPF15Q8N660 670 aa13.46□□□□□ -0.25
LRRC28-204ENST00000558172 NECTIN2Q92692 538 aa13.46□□□□□ -0.25
LRRC28-204ENST00000558172 HYPKQ9NX55 129 aa13.46□□□□□ -0.25
LRRC28-204ENST00000558172 C4AP0C0L4 1744 aa13.46□□□□□ -0.25
LRRC28-204ENST00000558172 PHF14O94880 888 aa13.45□□□□□ -0.26
LRRC28-204ENST00000558172 MYL6BP14649 208 aa13.45□□□□□ -0.26
LRRC28-204ENST00000558172 RFC4P35249 363 aa13.45□□□□□ -0.26
LRRC28-204ENST00000558172 R3HDM1Q15032 1099 aaKnown RBP13.45□□□□□ -0.26
LRRC28-204ENST00000558172 SLC16A10Q8TF71 515 aa13.45□□□□□ -0.26
LRRC28-204ENST00000558172 ARHGEF1Q92888 912 aaKnown RBP13.45□□□□□ -0.26
LRRC28-204ENST00000558172 CHPF2Q9P2E5 772 aa13.45□□□□□ -0.26
LRRC28-204ENST00000558172 COL15A1P39059 1388 aa13.45□□□□□ -0.26
LRRC28-204ENST00000558172 PIP4K2AP48426 406 aaPredicted RBP13.44□□□□□ -0.26
LRRC28-204ENST00000558172 ALDH1L2Q3SY69 923 aa13.44□□□□□ -0.26
LRRC28-204ENST00000558172 COL23A1Q86Y22 540 aaPredicted RBP13.44□□□□□ -0.26
LRRC28-204ENST00000558172 ZNF330Q9Y3S2 320 aaPredicted RBP13.44□□□□□ -0.26
LRRC28-204ENST00000558172 NUP98P52948 1817 aa13.43□□□□□ -0.26
LRRC28-204ENST00000558172 CASZ1Q86V15 1759 aa13.43□□□□□ -0.26
LRRC28-204ENST00000558172 MSH5O43196 834 aa13.43□□□□□ -0.26
LRRC28-204ENST00000558172 ZPR1O75312 459 aa13.43□□□□□ -0.26
LRRC28-204ENST00000558172 SLC4A2P04920 1241 aa13.43□□□□□ -0.26
LRRC28-204ENST00000558172 AMIGO3Q86WK7 504 aa13.43□□□□□ -0.26
LRRC28-204ENST00000558172 NARFQ9UHQ1 456 aa13.43□□□□□ -0.26
LRRC28-204ENST00000558172 PSDA5PKW4 1024 aaPredicted RBP13.42□□□□□ -0.26
LRRC28-204ENST00000558172 RGL2O15211 777 aa13.42□□□□□ -0.26
LRRC28-204ENST00000558172 LRP10Q7Z4F1 713 aa13.42□□□□□ -0.26
LRRC28-204ENST00000558172 DZIP3Q86Y13 1208 aaKnown RBP13.42□□□□□ -0.26
LRRC28-204ENST00000558172 ARXQ96QS3 562 aa13.42□□□□□ -0.26
LRRC28-204ENST00000558172 BCORQ6W2J9 1755 aa13.42□□□□□ -0.26
LRRC28-204ENST00000558172 ANXA1P04083 346 aa13.41□□□□□ -0.26
LRRC28-204ENST00000558172 PROSER3Q2NL68 480 aa13.41□□□□□ -0.26
LRRC28-204ENST00000558172 KIF6Q6ZMV9 814 aa13.41□□□□□ -0.26
LRRC28-204ENST00000558172 SMIM5Q71RC9 77 aa13.41□□□□□ -0.26
LRRC28-204ENST00000558172 COPS6Q7L5N1 327 aa13.41□□□□□ -0.26
LRRC28-204ENST00000558172 TBC1D2BQ9UPU7 963 aa13.41□□□□□ -0.26
LRRC28-204ENST00000558172 USP42Q9H9J4 1324 aaKnown RBP13.4□□□□□ -0.26
LRRC28-204ENST00000558172 COL24A1Q17RW2 1714 aa13.4□□□□□ -0.26
LRRC28-204ENST00000558172 ERVV-1B6SEH8 477 aa13.4□□□□□ -0.26
LRRC28-204ENST00000558172 TCERG1O14776 1098 aaKnown RBP13.4□□□□□ -0.26
LRRC28-204ENST00000558172 DDX58O95786 925 aaKnown RBP13.4□□□□□ -0.26
LRRC28-204ENST00000558172 CLEC4GQ6UXB4 293 aa13.4□□□□□ -0.26
LRRC28-204ENST00000558172 NLGN1Q8N2Q7 840 aa13.4□□□□□ -0.26
LRRC28-204ENST00000558172 XAGE3Q8WTP9 111 aa13.4□□□□□ -0.26
LRRC28-204ENST00000558172 ZNF652Q9Y2D9 606 aa13.4□□□□□ -0.26
LRRC28-204ENST00000558172 SCN7AQ01118 1682 aa13.4□□□□□ -0.26
LRRC28-204ENST00000558172 MAP3K15Q6ZN16 1313 aa13.39□□□□□ -0.27
LRRC28-204ENST00000558172 RARSP54136 660 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms