RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 SETBP1Q9Y6X0 1596 aa13.58□□□□□ -0.23
GTF2A1-204ENST00000556268 MST1RQ04912 1400 aa13.58□□□□□ -0.24
GTF2A1-204ENST00000556268 SKOR1P84550 965 aa13.58□□□□□ -0.24
GTF2A1-204ENST00000556268 HELBQ8NG08 1087 aaPredicted RBP13.58□□□□□ -0.24
GTF2A1-204ENST00000556268 TRIM52Q96A61 297 aa13.57□□□□□ -0.24
GTF2A1-204ENST00000556268 NRXN3Q9Y4C0 1643 aa13.57□□□□□ -0.24
GTF2A1-204ENST00000556268 F12P00748 615 aaPredicted RBP13.56□□□□□ -0.24
GTF2A1-204ENST00000556268 CTHP32929 405 aa13.56□□□□□ -0.24
GTF2A1-204ENST00000556268 MAP10Q9P2G4 905 aa13.56□□□□□ -0.24
GTF2A1-204ENST00000556268 SHPRHQ149N8 1683 aa13.56□□□□□ -0.24
GTF2A1-204ENST00000556268 WNT7AO00755 349 aa13.55□□□□□ -0.24
GTF2A1-204ENST00000556268 WNT7BP56706 349 aa13.55□□□□□ -0.24
GTF2A1-204ENST00000556268 PPARGC1BQ86YN6 1023 aaKnown RBP13.55□□□□□ -0.24
GTF2A1-204ENST00000556268 DDX17Q92841 729 aaKnown RBP13.55□□□□□ -0.24
GTF2A1-204ENST00000556268 QTRT2Q9H974 415 aaKnown RBP13.55□□□□□ -0.24
GTF2A1-204ENST00000556268 AFF2P51816 1311 aa13.55□□□□□ -0.24
GTF2A1-204ENST00000556268 CDK12Q9NYV4 1490 aaPredicted RBP13.55□□□□□ -0.24
GTF2A1-204ENST00000556268 XRN1Q8IZH2 1706 aaKnown RBP13.54□□□□□ -0.24
GTF2A1-204ENST00000556268 GOPCQ9HD26 462 aa13.54□□□□□ -0.24
GTF2A1-204ENST00000556268 ASXL1Q8IXJ9 1541 aa13.54□□□□□ -0.24
GTF2A1-204ENST00000556268 PPP2R2DQ66LE6 453 aa13.53□□□□□ -0.24
GTF2A1-204ENST00000556268 ADGRL3Q9HAR2 1447 aa13.53□□□□□ -0.24
GTF2A1-204ENST00000556268 LCE2BO14633 110 aa13.52□□□□□ -0.25
GTF2A1-204ENST00000556268 RBM6P78332 1123 aaKnown RBP13.52□□□□□ -0.25
GTF2A1-204ENST00000556268 LINC01559Q495D7 138 aa13.52□□□□□ -0.25
GTF2A1-204ENST00000556268 MRGPRX2Q96LB1 330 aa13.52□□□□□ -0.25
GTF2A1-204ENST00000556268 SOS2Q07890 1332 aaPredicted RBP13.52□□□□□ -0.25
GTF2A1-204ENST00000556268 RPGRIP1LQ68CZ1 1315 aa13.52□□□□□ -0.25
GTF2A1-204ENST00000556268 PNPLA6Q8IY17 1366 aa13.52□□□□□ -0.25
GTF2A1-204ENST00000556268 RC3H1Q5TC82 1133 aaKnown RBP13.51□□□□□ -0.25
GTF2A1-204ENST00000556268 PCMTD1Q96MG8 357 aaPredicted RBP13.51□□□□□ -0.25
GTF2A1-204ENST00000556268 SETD1AO15047 1707 aaKnown RBP13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 NEXMIFQ5QGS0 1516 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 C1orf167Q5SNV9 1468 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 NAIPQ13075 1403 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 SH3BP2P78314 561 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 CTDSPL2Q05D32 466 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 CYP4X1Q8N118 509 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 BAP1Q92560 729 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 C8orf37Q96NL8 207 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 ORAI2Q96SN7 254 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 TOR4AQ9NXH8 423 aa13.5□□□□□ -0.25
GTF2A1-204ENST00000556268 ROBO2Q9HCK4 1378 aa13.49□□□□□ -0.25
GTF2A1-204ENST00000556268 FAM187AA6NFU0 413 aa13.49□□□□□ -0.25
GTF2A1-204ENST00000556268 PKDCCQ504Y2 493 aa13.49□□□□□ -0.25
GTF2A1-204ENST00000556268 FNBP4Q8N3X1 1017 aaPredicted RBP13.49□□□□□ -0.25
GTF2A1-204ENST00000556268 NHSL1Q5SYE7 1610 aa13.49□□□□□ -0.25
GTF2A1-204ENST00000556268 PRAG1Q86YV5 1406 aa13.48□□□□□ -0.25
GTF2A1-204ENST00000556268 RRBP1Q9P2E9 1410 aaKnown RBP13.48□□□□□ -0.25
GTF2A1-204ENST00000556268 SPHKAPQ2M3C7 1700 aa13.48□□□□□ -0.25
GTF2A1-204ENST00000556268 NGLY1Q96IV0 654 aa13.48□□□□□ -0.25
GTF2A1-204ENST00000556268 ZNF511Q8NB15 262 aa13.47□□□□□ -0.25
GTF2A1-204ENST00000556268 PTCH1Q13635 1447 aa13.47□□□□□ -0.25
GTF2A1-204ENST00000556268 CLTCL1P53675 1640 aa13.46□□□□□ -0.25
GTF2A1-204ENST00000556268 DGAT1O75907 488 aa13.46□□□□□ -0.25
GTF2A1-204ENST00000556268 ADAMTS2O95450 1211 aa13.46□□□□□ -0.25
GTF2A1-204ENST00000556268 LRRN4Q8WUT4 740 aa13.46□□□□□ -0.25
GTF2A1-204ENST00000556268 TTC24A2A3L6 582 aaPredicted RBP13.45□□□□□ -0.26
GTF2A1-204ENST00000556268 AP1G2O75843 785 aa13.45□□□□□ -0.26
GTF2A1-204ENST00000556268 RFC5P40937 340 aa13.45□□□□□ -0.26
GTF2A1-204ENST00000556268 TRAF7Q6Q0C0 670 aa13.45□□□□□ -0.26
GTF2A1-204ENST00000556268 EHBP1Q8NDI1 1231 aa13.45□□□□□ -0.26
GTF2A1-204ENST00000556268 LAMC1P11047 1609 aa13.45□□□□□ -0.26
GTF2A1-204ENST00000556268 SNIP1Q8TAD8 396 aaKnown RBP13.44□□□□□ -0.26
GTF2A1-204ENST00000556268 HFM1A2PYH4 1435 aa13.44□□□□□ -0.26
GTF2A1-204ENST00000556268 RGS12O14924 1447 aa13.43□□□□□ -0.26
GTF2A1-204ENST00000556268 USP21Q9UK80 565 aa13.43□□□□□ -0.26
GTF2A1-204ENST00000556268 TRPC5Q9UL62 973 aaPredicted RBP13.43□□□□□ -0.26
GTF2A1-204ENST00000556268 NALCNQ8IZF0 1738 aa13.42□□□□□ -0.26
GTF2A1-204ENST00000556268 J3QL48 77 aa13.4□□□□□ -0.26
GTF2A1-204ENST00000556268 USP17L8P0C7I0 530 aa13.4□□□□□ -0.26
GTF2A1-204ENST00000556268 MYT1Q01538 1121 aa13.4□□□□□ -0.26
GTF2A1-204ENST00000556268 ESCO1Q5FWF5 840 aa13.4□□□□□ -0.26
GTF2A1-204ENST00000556268 SIRT1Q96EB6 747 aa13.4□□□□□ -0.26
GTF2A1-204ENST00000556268 KIF1BO60333 1816 aa13.4□□□□□ -0.26
GTF2A1-204ENST00000556268 NPHP3Q7Z494 1330 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 ADGRF5Q8IZF2 1346 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 SIAH2O43255 324 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 FOXO3O43524 673 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 SMPD1P17405 629 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 WAPLQ7Z5K2 1190 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 FOXJ1Q92949 421 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 ABCC11Q96J66 1382 aa13.39□□□□□ -0.27
GTF2A1-204ENST00000556268 SRCAPQ6ZRS2 3230 aa13.38□□□□□ -0.27
GTF2A1-204ENST00000556268 ATRNO75882 1429 aa13.38□□□□□ -0.27
GTF2A1-204ENST00000556268 BCL9LQ86UU0 1499 aa13.37□□□□□ -0.27
GTF2A1-204ENST00000556268 CCDC125Q86Z20 511 aa13.37□□□□□ -0.27
GTF2A1-204ENST00000556268 ARMC2Q8NEN0 867 aa13.37□□□□□ -0.27
GTF2A1-204ENST00000556268 HMX1Q9NP08 348 aaPredicted RBP13.37□□□□□ -0.27
GTF2A1-204ENST00000556268 MYOM2P54296 1465 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 LRPPRCP42704 1394 aaKnown RBP13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 ATAD2Q6PL18 1390 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 ALDH1A1P00352 501 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 NR6A1Q15406 480 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 RGL3Q3MIN7 710 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 GJD4Q96KN9 370 aaPredicted RBP13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 MPHOSPH9Q99550 1183 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 TLL2Q9Y6L7 1015 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 TECPR2O15040 1411 aa13.36□□□□□ -0.27
GTF2A1-204ENST00000556268 SPATA31E1Q6ZUB1 1445 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 1317.3 ms