RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 RARSP54136 660 aaKnown RBP14.3□□□□□ -0.12
SHMT2-220ENST00000555634 TSPYL6Q8N831 410 aa14.3□□□□□ -0.12
SHMT2-220ENST00000555634 LOC102724428A0A0B4J2F2 783 aa14.29□□□□□ -0.12
SHMT2-220ENST00000555634 KCNQ2O43526 872 aa14.29□□□□□ -0.12
SHMT2-220ENST00000555634 SIK1P57059 783 aa14.29□□□□□ -0.12
SHMT2-220ENST00000555634 KRT24Q2M2I5 525 aa14.29□□□□□ -0.12
SHMT2-220ENST00000555634 FTSJ3Q8IY81 847 aaKnown RBP14.29□□□□□ -0.12
SHMT2-220ENST00000555634 FRAT1Q92837 279 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-220ENST00000555634 BCL2L13Q9BXK5 485 aa14.29□□□□□ -0.12
SHMT2-220ENST00000555634 ANKRD36CQ5JPF3 1778 aa14.29□□□□□ -0.12
SHMT2-220ENST00000555634 PTPRCP08575 1304 aa14.28□□□□□ -0.12
SHMT2-220ENST00000555634 ATP6V1AP38606 617 aa14.28□□□□□ -0.12
SHMT2-220ENST00000555634 NUP188Q5SRE5 1749 aa14.28□□□□□ -0.12
SHMT2-220ENST00000555634 HYPKQ9NX55 129 aa14.28□□□□□ -0.12
SHMT2-220ENST00000555634 CCNL1Q9UK58 526 aaPredicted RBP14.28□□□□□ -0.12
SHMT2-220ENST00000555634 PXDNLA1KZ92 1463 aa14.27□□□□□ -0.12
SHMT2-220ENST00000555634 DDX58O95786 925 aaKnown RBP14.27□□□□□ -0.13
SHMT2-220ENST00000555634 RRP1P56182 461 aaKnown RBP14.27□□□□□ -0.13
SHMT2-220ENST00000555634 ZKSCAN2Q63HK3 967 aa14.27□□□□□ -0.13
SHMT2-220ENST00000555634 SSH1Q8WYL5 1049 aa14.27□□□□□ -0.13
SHMT2-220ENST00000555634 NECTIN2Q92692 538 aa14.27□□□□□ -0.13
SHMT2-220ENST00000555634 SUPT16HQ9Y5B9 1047 aaKnown RBP14.27□□□□□ -0.13
SHMT2-220ENST00000555634 BCORQ6W2J9 1755 aa14.27□□□□□ -0.13
SHMT2-220ENST00000555634 SLC27A3Q5K4L6 730 aa14.26□□□□□ -0.13
SHMT2-220ENST00000555634 API5Q9BZZ5 524 aaKnown RBP14.26□□□□□ -0.13
SHMT2-220ENST00000555634 CHPF2Q9P2E5 772 aa14.26□□□□□ -0.13
SHMT2-220ENST00000555634 SCN7AQ01118 1682 aa14.26□□□□□ -0.13
SHMT2-220ENST00000555634 APBA3O96018 575 aa14.25□□□□□ -0.13
SHMT2-220ENST00000555634 SLC4A2P04920 1241 aa14.25□□□□□ -0.13
SHMT2-220ENST00000555634 BRPF1P55201 1214 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-220ENST00000555634 FKBP5Q13451 457 aaPredicted RBP14.25□□□□□ -0.13
SHMT2-220ENST00000555634 DDX21Q9NR30 783 aaKnown RBP eCLIP14.25□□□□□ -0.13
SHMT2-220ENST00000555634 UBR3Q6ZT12 1888 aa14.25□□□□□ -0.13
SHMT2-220ENST00000555634 C4AP0C0L4 1744 aa14.24□□□□□ -0.13
SHMT2-220ENST00000555634 QSER1Q2KHR3 1735 aa14.24□□□□□ -0.13
SHMT2-220ENST00000555634 BCAR3O75815 825 aa14.24□□□□□ -0.13
SHMT2-220ENST00000555634 BAG6P46379 1132 aa14.24□□□□□ -0.13
SHMT2-220ENST00000555634 KIF6Q6ZMV9 814 aa14.24□□□□□ -0.13
SHMT2-220ENST00000555634 DNAJC10Q8IXB1 793 aa14.24□□□□□ -0.13
SHMT2-220ENST00000555634 ARHGAP45Q92619 1136 aa14.24□□□□□ -0.13
SHMT2-220ENST00000555634 CNTNAP4Q9C0A0 1308 aa14.23□□□□□ -0.13
SHMT2-220ENST00000555634 TCERG1O14776 1098 aaKnown RBP14.23□□□□□ -0.13
SHMT2-220ENST00000555634 FLIIQ13045 1269 aa14.23□□□□□ -0.13
SHMT2-220ENST00000555634 ATF7IPQ6VMQ6 1270 aa14.23□□□□□ -0.13
SHMT2-220ENST00000555634 CCDC125Q86Z20 511 aa14.23□□□□□ -0.13
SHMT2-220ENST00000555634 MRPL50Q8N5N7 158 aaKnown RBP14.23□□□□□ -0.13
SHMT2-220ENST00000555634 CHMP4BQ9H444 224 aaKnown RBP14.23□□□□□ -0.13
SHMT2-220ENST00000555634 CCDC87Q9NVE4 849 aa14.23□□□□□ -0.13
SHMT2-220ENST00000555634 ZNF330Q9Y3S2 320 aaPredicted RBP14.23□□□□□ -0.13
SHMT2-220ENST00000555634 MYH14Q7Z406 1995 aaKnown RBP14.23□□□□□ -0.13
SHMT2-220ENST00000555634 NUP98P52948 1817 aa14.22□□□□□ -0.13
SHMT2-220ENST00000555634 MYL6BP14649 208 aa14.22□□□□□ -0.13
SHMT2-220ENST00000555634 AK7Q96M32 723 aa14.22□□□□□ -0.13
SHMT2-220ENST00000555634 NOB1Q9ULX3 412 aaKnown RBP14.22□□□□□ -0.13
SHMT2-220ENST00000555634 TUBGCP6Q96RT7 1819 aa14.22□□□□□ -0.13
SHMT2-220ENST00000555634 EP400Q96L91 3159 aa14.22□□□□□ -0.13
SHMT2-220ENST00000555634 PRAMEF22A3QJZ6 481 aa14.21□□□□□ -0.13
SHMT2-220ENST00000555634 PLSCR1O15162 318 aa14.21□□□□□ -0.13
SHMT2-220ENST00000555634 CYP19A1P11511 503 aaPredicted RBP14.21□□□□□ -0.13
SHMT2-220ENST00000555634 PDE3AQ14432 1141 aa14.21□□□□□ -0.13
SHMT2-220ENST00000555634 USP16Q9Y5T5 823 aa14.21□□□□□ -0.13
SHMT2-220ENST00000555634 A0A087WZG4 1122 aa14.2□□□□□ -0.14
SHMT2-220ENST00000555634 CRKLP46109 303 aaKnown RBP14.2□□□□□ -0.14
SHMT2-220ENST00000555634 NEXNQ0ZGT2 675 aa14.2□□□□□ -0.14
SHMT2-220ENST00000555634 DZIP1LQ8IYY4 767 aaKnown RBP14.2□□□□□ -0.14
SHMT2-220ENST00000555634 COL15A1P39059 1388 aa14.2□□□□□ -0.14
SHMT2-220ENST00000555634 RNF123Q5XPI4 1314 aa14.19□□□□□ -0.14
SHMT2-220ENST00000555634 IL6STP40189 918 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-220ENST00000555634 RIC3Q7Z5B4 369 aa14.19□□□□□ -0.14
SHMT2-220ENST00000555634 ARXQ96QS3 562 aa14.19□□□□□ -0.14
SHMT2-220ENST00000555634 A1BGP04217 495 aa14.18□□□□□ -0.14
SHMT2-220ENST00000555634 TRIM27P14373 513 aa14.18□□□□□ -0.14
SHMT2-220ENST00000555634 AIMP1Q12904 312 aaKnown RBP14.18□□□□□ -0.14
SHMT2-220ENST00000555634 TXNRD1Q16881 649 aa14.18□□□□□ -0.14
SHMT2-220ENST00000555634 RC3H1Q5TC82 1133 aaKnown RBP14.18□□□□□ -0.14
SHMT2-220ENST00000555634 PTF1AQ7RTS3 328 aa14.18□□□□□ -0.14
SHMT2-220ENST00000555634 ITPRIPQ8IWB1 547 aa14.18□□□□□ -0.14
SHMT2-220ENST00000555634 ZNF652Q9Y2D9 606 aa14.18□□□□□ -0.14
SHMT2-220ENST00000555634 GNPATO15228 680 aa14.17□□□□□ -0.14
SHMT2-220ENST00000555634 CCT4P50991 539 aaKnown RBP14.17□□□□□ -0.14
SHMT2-220ENST00000555634 ITPK1Q13572 414 aa14.17□□□□□ -0.14
SHMT2-220ENST00000555634 SLC4A10Q6U841 1118 aa14.17□□□□□ -0.14
SHMT2-220ENST00000555634 LINC00116Q8NCU8 138 aa14.17□□□□□ -0.14
SHMT2-220ENST00000555634 XAGE3Q8WTP9 111 aa14.17□□□□□ -0.14
SHMT2-220ENST00000555634 ZBTB1Q9Y2K1 713 aa14.17□□□□□ -0.14
SHMT2-220ENST00000555634 RTCBQ9Y3I0 505 aaKnown RBP14.17□□□□□ -0.14
SHMT2-220ENST00000555634 ABCC4O15439 1325 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 ATP10DQ9P241 1426 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 PLIN1O60240 522 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 ANXA1P04083 346 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 ADRA2BP18089 450 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 HSP90AB3PQ58FF7 597 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 CLUAP1Q96AJ1 413 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 SLC4A9Q96Q91 983 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 DDX19BQ9UMR2 479 aa14.16□□□□□ -0.14
SHMT2-220ENST00000555634 MYH3P11055 1940 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 LAMB2P55268 1798 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 AAMPQ13685 434 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 PROSER3Q2NL68 480 aa14.15□□□□□ -0.14
SHMT2-220ENST00000555634 KSR2Q6VAB6 950 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms