RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ATXN7O15265 892 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-216ENST00000555550 ATP4AP20648 1035 aa9.12□□□□□ -0.95
SCFD1-216ENST00000555550 VAC14Q08AM6 782 aa9.12□□□□□ -0.95
SCFD1-216ENST00000555550 ARSJQ5FYB0 599 aaPredicted RBP9.12□□□□□ -0.95
SCFD1-216ENST00000555550 CD33P20138 364 aa9.11□□□□□ -0.95
SCFD1-216ENST00000555550 DGKGP49619 791 aa9.11□□□□□ -0.95
SCFD1-216ENST00000555550 SMTNP53814 917 aa9.11□□□□□ -0.95
SCFD1-216ENST00000555550 Q8N3U1 123 aa9.11□□□□□ -0.95
SCFD1-216ENST00000555550 SIRT1Q96EB6 747 aa9.11□□□□□ -0.95
SCFD1-216ENST00000555550 NIFKQ9BYG3 293 aaKnown RBP9.11□□□□□ -0.95
SCFD1-216ENST00000555550 CHIC2Q9UKJ5 165 aa9.11□□□□□ -0.95
SCFD1-216ENST00000555550 A0A1W2PNR3 127 aa9.1□□□□□ -0.95
SCFD1-216ENST00000555550 MAPTP10636 758 aaKnown RBP9.1□□□□□ -0.95
SCFD1-216ENST00000555550 CHRNA4P43681 627 aa9.1□□□□□ -0.95
SCFD1-216ENST00000555550 TNP2Q05952 138 aa9.1□□□□□ -0.95
SCFD1-216ENST00000555550 CHSY3Q70JA7 882 aa9.1□□□□□ -0.95
SCFD1-216ENST00000555550 NLRP8Q86W28 1048 aa9.1□□□□□ -0.95
SCFD1-216ENST00000555550 KHNYNO15037 678 aaKnown RBP9.09□□□□□ -0.95
SCFD1-216ENST00000555550 PIK3R2O00459 728 aa9.08□□□□□ -0.96
SCFD1-216ENST00000555550 PCBP4P57723 403 aaKnown RBP9.08□□□□□ -0.96
SCFD1-216ENST00000555550 FCHSD1Q86WN1 690 aa9.08□□□□□ -0.96
SCFD1-216ENST00000555550 C1orf216Q8TAB5 229 aa9.08□□□□□ -0.96
SCFD1-216ENST00000555550 PRM3Q9NNZ6 103 aa9.08□□□□□ -0.96
SCFD1-216ENST00000555550 DOC2BQ14184 412 aa9.07□□□□□ -0.96
SCFD1-216ENST00000555550 GDPD2Q9HCC8 539 aa9.07□□□□□ -0.96
SCFD1-216ENST00000555550 USP3Q9Y6I4 520 aa9.07□□□□□ -0.96
SCFD1-216ENST00000555550 TMEM229AB2RXF0 380 aa9.06□□□□□ -0.96
SCFD1-216ENST00000555550 ADH6P28332 368 aa9.06□□□□□ -0.96
SCFD1-216ENST00000555550 PLPP7Q8NBV4 271 aa9.06□□□□□ -0.96
SCFD1-216ENST00000555550 ZIC5Q96T25 663 aa9.06□□□□□ -0.96
SCFD1-216ENST00000555550 NOP53Q9NZM5 478 aaKnown RBP9.06□□□□□ -0.96
SCFD1-216ENST00000555550 PARP3Q9Y6F1 533 aa9.06□□□□□ -0.96
SCFD1-216ENST00000555550 ABL2P42684 1182 aa9.05□□□□□ -0.96
SCFD1-216ENST00000555550 ZNF295-AS1Q8N0V1 137 aa9.05□□□□□ -0.96
SCFD1-216ENST00000555550 CABP1Q9NZU7 370 aa9.05□□□□□ -0.96
SCFD1-216ENST00000555550 PRR12Q9ULL5 1215 aa9.05□□□□□ -0.96
SCFD1-216ENST00000555550 A6NJY4 79 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 CDK2AP1O14519 115 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 ITGB7P26010 798 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 NBPF1Q3BBV0 1214 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 MAP7D1Q3KQU3 841 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 FAM182BQ5T319 152 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 TRIM11Q96F44 468 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 PLVAPQ9BX97 442 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 SEMA6BQ9H3T3 888 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 STRN4Q9NRL3 753 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 IQSEC3Q9UPP2 1182 aaPredicted RBP9.04□□□□□ -0.96
SCFD1-216ENST00000555550 GJA3Q9Y6H8 435 aa9.04□□□□□ -0.96
SCFD1-216ENST00000555550 SLC4A9Q96Q91 983 aa9.03□□□□□ -0.96
SCFD1-216ENST00000555550 TATP17735 454 aaPredicted RBP9.02□□□□□ -0.97
SCFD1-216ENST00000555550 MTFR1Q15390 333 aa9.02□□□□□ -0.97
SCFD1-216ENST00000555550 BICDL1Q6ZP65 573 aa9.02□□□□□ -0.97
SCFD1-216ENST00000555550 SEMA3FQ13275 785 aa9.01□□□□□ -0.97
SCFD1-216ENST00000555550 TPRNQ4KMQ1 711 aa9.01□□□□□ -0.97
SCFD1-216ENST00000555550 AVENQ9NQS1 362 aaPredicted RBP9.01□□□□□ -0.97
SCFD1-216ENST00000555550 MARK1Q9P0L2 795 aa9.01□□□□□ -0.97
SCFD1-216ENST00000555550 PCDHGA11Q9Y5H2 935 aa9.01□□□□□ -0.97
SCFD1-216ENST00000555550 PIK3CDO00329 1044 aa9□□□□□ -0.97
SCFD1-216ENST00000555550 TXLNAP40222 546 aa9□□□□□ -0.97
SCFD1-216ENST00000555550 ZNF468Q5VIY5 522 aaPredicted RBP9□□□□□ -0.97
SCFD1-216ENST00000555550 ZDHHC3Q9NYG2 299 aa9□□□□□ -0.97
SCFD1-216ENST00000555550 FAM157BP0CG42 384 aa8.99□□□□□ -0.97
SCFD1-216ENST00000555550 GATA4P43694 442 aa8.99□□□□□ -0.97
SCFD1-216ENST00000555550 WASHC4Q2M389 1173 aa8.98□□□□□ -0.97
SCFD1-216ENST00000555550 SYT9Q86SS6 491 aa8.97□□□□□ -0.97
SCFD1-216ENST00000555550 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.97□□□□□ -0.97
SCFD1-216ENST00000555550 ZDHHC1Q8WTX9 485 aa8.97□□□□□ -0.97
SCFD1-216ENST00000555550 KRTAP4-8Q9BYQ9 185 aa8.97□□□□□ -0.97
SCFD1-216ENST00000555550 EFSO43281 561 aa8.96□□□□□ -0.98
SCFD1-216ENST00000555550 TBCELQ5QJ74 424 aa8.96□□□□□ -0.98
SCFD1-216ENST00000555550 LRRC69Q6ZNQ3 347 aa8.96□□□□□ -0.98
SCFD1-216ENST00000555550 L3MBTL2Q969R5 705 aa8.96□□□□□ -0.98
SCFD1-216ENST00000555550 ELOA3CA0A087WX78 387 aaPredicted RBP8.95□□□□□ -0.98
SCFD1-216ENST00000555550 ELOA3DA6NLF2 546 aaPredicted RBP8.95□□□□□ -0.98
SCFD1-216ENST00000555550 SPATA31C1P0DKV0 1188 aa8.95□□□□□ -0.98
SCFD1-216ENST00000555550 ALAS2P22557 587 aa8.95□□□□□ -0.98
SCFD1-216ENST00000555550 ELOA3BQ3SY89 546 aa8.95□□□□□ -0.98
SCFD1-216ENST00000555550 SAMD5Q5TGI4 173 aa8.95□□□□□ -0.98
SCFD1-216ENST00000555550 ELOA3Q8NG57 546 aa8.95□□□□□ -0.98
SCFD1-216ENST00000555550 BACH1O14867 736 aa8.94□□□□□ -0.98
SCFD1-216ENST00000555550 SKIP12755 728 aa8.94□□□□□ -0.98
SCFD1-216ENST00000555550 SCHIP1Q9P0W5 487 aaPredicted RBP8.94□□□□□ -0.98
SCFD1-216ENST00000555550 FAM229AH3BQW9 127 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 NOS2P35228 1153 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 GTF2IP78347 998 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 PSME1Q06323 249 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 SFSWAPQ12872 951 aaKnown RBP8.93□□□□□ -0.98
SCFD1-216ENST00000555550 LAMC2Q13753 1193 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 EML3Q32P44 896 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 ZMYM1Q5SVZ6 1142 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 ZNF358Q9NW07 568 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 NOD1Q9Y239 953 aa8.93□□□□□ -0.98
SCFD1-216ENST00000555550 RSPO4Q2I0M5 234 aaPredicted RBP8.92□□□□□ -0.98
SCFD1-216ENST00000555550 C8orf86Q6ZUL3 223 aa8.92□□□□□ -0.98
SCFD1-216ENST00000555550 TNS4Q8IZW8 715 aa8.92□□□□□ -0.98
SCFD1-216ENST00000555550 C7orf43Q8WVR3 580 aa8.92□□□□□ -0.98
SCFD1-216ENST00000555550 PSMG3-AS1Q96PY0 264 aa8.92□□□□□ -0.98
SCFD1-216ENST00000555550 SLC30A3Q99726 388 aa8.92□□□□□ -0.98
SCFD1-216ENST00000555550 NEUROD4Q9HD90 331 aa8.92□□□□□ -0.98
SCFD1-216ENST00000555550 ZNF232Q9UNY5 417 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms