RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 RNF123Q5XPI4 1314 aa18.53■□□□□ 0.56
SHMT2-210ENST00000553950 C4BP0C0L5 1744 aa18.53■□□□□ 0.56
SHMT2-210ENST00000553950 EIF2S2P20042 333 aaKnown RBP18.53■□□□□ 0.56
SHMT2-210ENST00000553950 RRP1P56182 461 aaKnown RBP18.53■□□□□ 0.56
SHMT2-210ENST00000553950 HYPKQ9NX55 129 aa18.53■□□□□ 0.56
SHMT2-210ENST00000553950 PXDNLA1KZ92 1463 aa18.52■□□□□ 0.56
SHMT2-210ENST00000553950 NEFLP07196 543 aa18.52■□□□□ 0.56
SHMT2-210ENST00000553950 ATP6V1AP38606 617 aa18.52■□□□□ 0.56
SHMT2-210ENST00000553950 SF3B2Q13435 895 aaKnown RBP18.52■□□□□ 0.56
SHMT2-210ENST00000553950 DDX21Q9NR30 783 aaKnown RBP eCLIP18.52■□□□□ 0.56
SHMT2-210ENST00000553950 PLSCR1O15162 318 aa18.51■□□□□ 0.55
SHMT2-210ENST00000553950 MRPL50Q8N5N7 158 aaKnown RBP18.51■□□□□ 0.55
SHMT2-210ENST00000553950 ARHGAP45Q92619 1136 aa18.51■□□□□ 0.55
SHMT2-210ENST00000553950 BCL2L13Q9BXK5 485 aa18.51■□□□□ 0.55
SHMT2-210ENST00000553950 CHPF2Q9P2E5 772 aa18.51■□□□□ 0.55
SHMT2-210ENST00000553950 CCNL1Q9UK58 526 aaPredicted RBP18.51■□□□□ 0.55
SHMT2-210ENST00000553950 EP400Q96L91 3159 aa18.5■□□□□ 0.55
SHMT2-210ENST00000553950 ARFGEF2Q9Y6D5 1785 aa18.5■□□□□ 0.55
SHMT2-210ENST00000553950 BCAR3O75815 825 aa18.5■□□□□ 0.55
SHMT2-210ENST00000553950 ZKSCAN2Q63HK3 967 aa18.5■□□□□ 0.55
SHMT2-210ENST00000553950 DNAJC10Q8IXB1 793 aa18.5■□□□□ 0.55
SHMT2-210ENST00000553950 API5Q9BZZ5 524 aaKnown RBP18.5■□□□□ 0.55
SHMT2-210ENST00000553950 SUPT16HQ9Y5B9 1047 aaKnown RBP18.5■□□□□ 0.55
SHMT2-210ENST00000553950 MYH14Q7Z406 1995 aaKnown RBP18.5■□□□□ 0.55
SHMT2-210ENST00000553950 CNTNAP4Q9C0A0 1308 aa18.49■□□□□ 0.55
SHMT2-210ENST00000553950 NUP188Q5SRE5 1749 aa18.49■□□□□ 0.55
SHMT2-210ENST00000553950 SLC4A2P04920 1241 aa18.49■□□□□ 0.55
SHMT2-210ENST00000553950 NPM2Q86SE8 214 aaKnown RBP18.49■□□□□ 0.55
SHMT2-210ENST00000553950 CCDC125Q86Z20 511 aa18.49■□□□□ 0.55
SHMT2-210ENST00000553950 USP16Q9Y5T5 823 aa18.49■□□□□ 0.55
SHMT2-210ENST00000553950 BCORQ6W2J9 1755 aa18.48■□□□□ 0.55
SHMT2-210ENST00000553950 PRAMEF22A3QJZ6 481 aa18.48■□□□□ 0.55
SHMT2-210ENST00000553950 DDX58O95786 925 aaKnown RBP18.48■□□□□ 0.55
SHMT2-210ENST00000553950 APBA3O96018 575 aa18.48■□□□□ 0.55
SHMT2-210ENST00000553950 CYP19A1P11511 503 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-210ENST00000553950 NECTIN2Q92692 538 aa18.48■□□□□ 0.55
SHMT2-210ENST00000553950 FRAT1Q92837 279 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-210ENST00000553950 ANKRD36CQ5JPF3 1778 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 FLIIQ13045 1269 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 ATF7IPQ6VMQ6 1270 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 PTF1AQ7RTS3 328 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 FTSJ3Q8IY81 847 aaKnown RBP18.47■□□□□ 0.55
SHMT2-210ENST00000553950 SLC4A9Q96Q91 983 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 CCDC87Q9NVE4 849 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 UBR3Q6ZT12 1888 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 SCN7AQ01118 1682 aa18.47■□□□□ 0.55
SHMT2-210ENST00000553950 QSER1Q2KHR3 1735 aa18.46■□□□□ 0.55
SHMT2-210ENST00000553950 BAG6P46379 1132 aa18.46■□□□□ 0.55
SHMT2-210ENST00000553950 PDE3AQ14432 1141 aa18.46■□□□□ 0.55
SHMT2-210ENST00000553950 IL6STP40189 918 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-210ENST00000553950 FKBP5Q13451 457 aaPredicted RBP18.45■□□□□ 0.54
SHMT2-210ENST00000553950 ITPK1Q13572 414 aa18.45■□□□□ 0.54
SHMT2-210ENST00000553950 RC3H1Q5TC82 1133 aaKnown RBP18.45■□□□□ 0.54
SHMT2-210ENST00000553950 NOB1Q9ULX3 412 aaKnown RBP18.45■□□□□ 0.54
SHMT2-210ENST00000553950 AFDNP55196 1824 aaKnown RBP18.44■□□□□ 0.54
SHMT2-210ENST00000553950 C4AP0C0L4 1744 aa18.44■□□□□ 0.54
SHMT2-210ENST00000553950 TCERG1O14776 1098 aaKnown RBP18.44■□□□□ 0.54
SHMT2-210ENST00000553950 CRKLP46109 303 aaKnown RBP18.44■□□□□ 0.54
SHMT2-210ENST00000553950 MYL6BP14649 208 aa18.43■□□□□ 0.54
SHMT2-210ENST00000553950 PDIA6Q15084 440 aa18.43■□□□□ 0.54
SHMT2-210ENST00000553950 TXNRD1Q16881 649 aa18.43■□□□□ 0.54
SHMT2-210ENST00000553950 ABCC4O15439 1325 aa18.43■□□□□ 0.54
SHMT2-210ENST00000553950 A0A087WZG4 1122 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 A1BGP04217 495 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 TRIM27P14373 513 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 KIF6Q6ZMV9 814 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 DZIP1LQ8IYY4 767 aaKnown RBP18.42■□□□□ 0.54
SHMT2-210ENST00000553950 LINC00116Q8NCU8 138 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 AK7Q96M32 723 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 ZBTB1Q9Y2K1 713 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 TUBGCP6Q96RT7 1819 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 COL15A1P39059 1388 aa18.42■□□□□ 0.54
SHMT2-210ENST00000553950 ATP10DQ9P241 1426 aa18.41■□□□□ 0.54
SHMT2-210ENST00000553950 PROSER3Q2NL68 480 aa18.41■□□□□ 0.54
SHMT2-210ENST00000553950 CHMP4BQ9H444 224 aaKnown RBP18.41■□□□□ 0.54
SHMT2-210ENST00000553950 NUP98P52948 1817 aa18.41■□□□□ 0.54
SHMT2-210ENST00000553950 NBPF26B4DH59 902 aa18.4■□□□□ 0.54
SHMT2-210ENST00000553950 RGL2O15211 777 aa18.4■□□□□ 0.54
SHMT2-210ENST00000553950 ADRA2BP18089 450 aa18.4■□□□□ 0.54
SHMT2-210ENST00000553950 NBPF14Q5TI25 921 aa18.4■□□□□ 0.54
SHMT2-210ENST00000553950 NBPF10Q6P3W6 841 aaKnown RBP18.4■□□□□ 0.54
SHMT2-210ENST00000553950 LRP10Q7Z4F1 713 aa18.4■□□□□ 0.54
SHMT2-210ENST00000553950 NBPF15Q8N660 670 aa18.4■□□□□ 0.54
SHMT2-210ENST00000553950 IBTKQ9P2D0 1353 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-210ENST00000553950 CCT4P50991 539 aaKnown RBP18.39■□□□□ 0.53
SHMT2-210ENST00000553950 INTS5Q6P9B9 1019 aaKnown RBP18.39■□□□□ 0.53
SHMT2-210ENST00000553950 KSR2Q6VAB6 950 aa18.39■□□□□ 0.53
SHMT2-210ENST00000553950 XAGE3Q8WTP9 111 aa18.39■□□□□ 0.53
SHMT2-210ENST00000553950 PHAXQ9H814 394 aaKnown RBP18.39■□□□□ 0.53
SHMT2-210ENST00000553950 PLIN1O60240 522 aa18.38■□□□□ 0.53
SHMT2-210ENST00000553950 ANXA1P04083 346 aa18.38■□□□□ 0.53
SHMT2-210ENST00000553950 NEXNQ0ZGT2 675 aa18.38■□□□□ 0.53
SHMT2-210ENST00000553950 COPS6Q7L5N1 327 aa18.38■□□□□ 0.53
SHMT2-210ENST00000553950 G2E3Q7L622 706 aa18.38■□□□□ 0.53
SHMT2-210ENST00000553950 PLBD2Q8NHP8 589 aa18.38■□□□□ 0.53
SHMT2-210ENST00000553950 RTCBQ9Y3I0 505 aaKnown RBP18.38■□□□□ 0.53
SHMT2-210ENST00000553950 GNPATO15228 680 aa18.37■□□□□ 0.53
SHMT2-210ENST00000553950 RPS6KA4O75676 772 aa18.37■□□□□ 0.53
SHMT2-210ENST00000553950 EIF5P55010 431 aaKnown RBP18.37■□□□□ 0.53
SHMT2-210ENST00000553950 AAMPQ13685 434 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms