RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CRKLP46109 303 aaKnown RBP15.8■□□□□ 0.12
SHMT2-209ENST00000553949 INTS5Q6P9B9 1019 aaKnown RBP15.8■□□□□ 0.12
SHMT2-209ENST00000553949 RREB1Q92766 1687 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 VAMP4O75379 141 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 A1BGP04217 495 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 ZNF827Q17R98 1081 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 RC3H1Q5TC82 1133 aaKnown RBP15.79■□□□□ 0.12
SHMT2-209ENST00000553949 HDGFL1Q5TGJ6 251 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 AKT1S1Q96B36 256 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 CCDC87Q9NVE4 849 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 C5P01031 1676 aa15.79■□□□□ 0.12
SHMT2-209ENST00000553949 NECTIN2Q92692 538 aa15.78■□□□□ 0.12
SHMT2-209ENST00000553949 AK7Q96M32 723 aa15.78■□□□□ 0.12
SHMT2-209ENST00000553949 ANO8Q9HCE9 1232 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-209ENST00000553949 ZBTB1Q9Y2K1 713 aa15.78■□□□□ 0.12
SHMT2-209ENST00000553949 C4BP0C0L5 1744 aa15.77■□□□□ 0.12
SHMT2-209ENST00000553949 GNPATO15228 680 aa15.77■□□□□ 0.12
SHMT2-209ENST00000553949 NBPF14Q5TI25 921 aa15.77■□□□□ 0.12
SHMT2-209ENST00000553949 CHMP4AQ9BY43 222 aa15.77■□□□□ 0.12
SHMT2-209ENST00000553949 STK32BQ9NY57 414 aa15.77■□□□□ 0.12
SHMT2-209ENST00000553949 COL5A3P25940 1745 aaPredicted RBP15.77■□□□□ 0.11
SHMT2-209ENST00000553949 NUP188Q5SRE5 1749 aa15.77■□□□□ 0.11
SHMT2-209ENST00000553949 ERBB4Q15303 1308 aa15.76■□□□□ 0.11
SHMT2-209ENST00000553949 NBPF26B4DH59 902 aa15.76■□□□□ 0.11
SHMT2-209ENST00000553949 CT47B1P0C2W7 299 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-209ENST00000553949 CANXP27824 592 aaKnown RBP15.76■□□□□ 0.11
SHMT2-209ENST00000553949 PIP4K2AP48426 406 aaPredicted RBP15.76■□□□□ 0.11
SHMT2-209ENST00000553949 SLC15A2Q16348 729 aa15.76■□□□□ 0.11
SHMT2-209ENST00000553949 CCDC30Q5VVM6 783 aa15.76■□□□□ 0.11
SHMT2-209ENST00000553949 NBPF10Q6P3W6 841 aaKnown RBP15.76■□□□□ 0.11
SHMT2-209ENST00000553949 NBPF15Q8N660 670 aa15.76■□□□□ 0.11
SHMT2-209ENST00000553949 LAMB4A4D0S4 1761 aa15.75■□□□□ 0.11
SHMT2-209ENST00000553949 RPS6KA4O75676 772 aa15.75■□□□□ 0.11
SHMT2-209ENST00000553949 PDIA6Q15084 440 aa15.75■□□□□ 0.11
SHMT2-209ENST00000553949 AMIGO3Q86WK7 504 aa15.75■□□□□ 0.11
SHMT2-209ENST00000553949 TFCP2L1Q9NZI6 479 aa15.75■□□□□ 0.11
SHMT2-209ENST00000553949 CHPF2Q9P2E5 772 aa15.75■□□□□ 0.11
SHMT2-209ENST00000553949 DBF4Q9UBU7 674 aaPredicted RBP15.75■□□□□ 0.11
SHMT2-209ENST00000553949 RTCBQ9Y3I0 505 aaKnown RBP15.75■□□□□ 0.11
SHMT2-209ENST00000553949 TAF1LQ8IZX4 1826 aa15.75■□□□□ 0.11
SHMT2-209ENST00000553949 TCERG1O14776 1098 aaKnown RBP15.74■□□□□ 0.11
SHMT2-209ENST00000553949 IL6STP40189 918 aaPredicted RBP15.74■□□□□ 0.11
SHMT2-209ENST00000553949 EIF5P55010 431 aaKnown RBP15.74■□□□□ 0.11
SHMT2-209ENST00000553949 PROSER3Q2NL68 480 aa15.74■□□□□ 0.11
SHMT2-209ENST00000553949 ZNF428Q96B54 188 aa15.74■□□□□ 0.11
SHMT2-209ENST00000553949 DDX21Q9NR30 783 aaKnown RBP eCLIP15.74■□□□□ 0.11
SHMT2-209ENST00000553949 ANXA1P04083 346 aa15.73■□□□□ 0.11
SHMT2-209ENST00000553949 MYL6BP14649 208 aa15.73■□□□□ 0.11
SHMT2-209ENST00000553949 SMIM5Q71RC9 77 aa15.73■□□□□ 0.11
SHMT2-209ENST00000553949 STK31Q9BXU1 1019 aa15.73■□□□□ 0.11
SHMT2-209ENST00000553949 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.72■□□□□ 0.11
SHMT2-209ENST00000553949 PHF14O94880 888 aa15.72■□□□□ 0.11
SHMT2-209ENST00000553949 ADRA2BP18089 450 aa15.72■□□□□ 0.11
SHMT2-209ENST00000553949 SSFA2P28290 1259 aa15.72■□□□□ 0.11
SHMT2-209ENST00000553949 TRAPPC3LQ5T215 181 aa15.72■□□□□ 0.11
SHMT2-209ENST00000553949 LRP10Q7Z4F1 713 aa15.72■□□□□ 0.11
SHMT2-209ENST00000553949 ZNF330Q9Y3S2 320 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-209ENST00000553949 SLC4A2P04920 1241 aa15.71■□□□□ 0.11
SHMT2-209ENST00000553949 NPM2Q86SE8 214 aaKnown RBP15.71■□□□□ 0.11
SHMT2-209ENST00000553949 HYPKQ9NX55 129 aa15.71■□□□□ 0.11
SHMT2-209ENST00000553949 COL15A1P39059 1388 aa15.71■□□□□ 0.11
SHMT2-209ENST00000553949 MYH14Q7Z406 1995 aaKnown RBP15.71■□□□□ 0.1
SHMT2-209ENST00000553949 PNPLA7Q6ZV29 1317 aa15.7■□□□□ 0.1
SHMT2-209ENST00000553949 ALDH1L2Q3SY69 923 aa15.7■□□□□ 0.1
SHMT2-209ENST00000553949 FLAD1Q8NFF5 587 aa15.7■□□□□ 0.1
SHMT2-209ENST00000553949 SSH1Q8WYL5 1049 aa15.7■□□□□ 0.1
SHMT2-209ENST00000553949 ARHGEF1Q92888 912 aaKnown RBP15.7■□□□□ 0.1
SHMT2-209ENST00000553949 A0A087WZG4 1122 aa15.69■□□□□ 0.1
SHMT2-209ENST00000553949 RARSP54136 660 aaKnown RBP15.69■□□□□ 0.1
SHMT2-209ENST00000553949 R3HDM1Q15032 1099 aaKnown RBP15.69■□□□□ 0.1
SHMT2-209ENST00000553949 COL23A1Q86Y22 540 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-209ENST00000553949 RFC4P35249 363 aa15.68■□□□□ 0.1
SHMT2-209ENST00000553949 COPS6Q7L5N1 327 aa15.68■□□□□ 0.1
SHMT2-209ENST00000553949 MRPL50Q8N5N7 158 aaKnown RBP15.68■□□□□ 0.1
SHMT2-209ENST00000553949 XAGE3Q8WTP9 111 aa15.68■□□□□ 0.1
SHMT2-209ENST00000553949 ARXQ96QS3 562 aa15.68■□□□□ 0.1
SHMT2-209ENST00000553949 BCL2L13Q9BXK5 485 aa15.68■□□□□ 0.1
SHMT2-209ENST00000553949 PHAXQ9H814 394 aaKnown RBP15.68■□□□□ 0.1
SHMT2-209ENST00000553949 SMC4Q9NTJ3 1288 aa15.68■□□□□ 0.1
SHMT2-209ENST00000553949 TBC1D2BQ9UPU7 963 aa15.68■□□□□ 0.1
SHMT2-209ENST00000553949 MSH5O43196 834 aa15.67■□□□□ 0.1
SHMT2-209ENST00000553949 AIMP1Q12904 312 aaKnown RBP15.67■□□□□ 0.1
SHMT2-209ENST00000553949 TTLL7Q6ZT98 887 aa15.67■□□□□ 0.1
SHMT2-209ENST00000553949 G2E3Q7L622 706 aa15.67■□□□□ 0.1
SHMT2-209ENST00000553949 DZIP3Q86Y13 1208 aaKnown RBP15.67■□□□□ 0.1
SHMT2-209ENST00000553949 NARFQ9UHQ1 456 aa15.67■□□□□ 0.1
SHMT2-209ENST00000553949 UBR3Q6ZT12 1888 aa15.67■□□□□ 0.1
SHMT2-209ENST00000553949 PSDA5PKW4 1024 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-209ENST00000553949 KIF6Q6ZMV9 814 aa15.66■□□□□ 0.1
SHMT2-209ENST00000553949 PDGFDQ9GZP0 370 aaPredicted RBP15.66■□□□□ 0.1
SHMT2-209ENST00000553949 USP42Q9H9J4 1324 aaKnown RBP15.66■□□□□ 0.1
SHMT2-209ENST00000553949 ZPR1O75312 459 aa15.65■□□□□ 0.1
SHMT2-209ENST00000553949 BCAR3O75815 825 aa15.65■□□□□ 0.1
SHMT2-209ENST00000553949 CAMTA2O94983 1202 aa15.65■□□□□ 0.1
SHMT2-209ENST00000553949 BRPF1P55201 1214 aaPredicted RBP15.65■□□□□ 0.1
SHMT2-209ENST00000553949 FLIIQ13045 1269 aa15.65■□□□□ 0.1
SHMT2-209ENST00000553949 SRP68Q9UHB9 627 aaKnown RBP15.65■□□□□ 0.1
SHMT2-209ENST00000553949 RCAN3Q9UKA8 241 aa15.65■□□□□ 0.1
SHMT2-209ENST00000553949 MAP3K15Q6ZN16 1313 aa15.65■□□□□ 0.1
SHMT2-209ENST00000553949 USPL1Q5W0Q7 1092 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms