RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 CRKLP46109 303 aaKnown RBP30.01■■■□□ 2.39
SMARCD1-203ENST00000547247 AKT1S1Q96B36 256 aa30.01■■■□□ 2.39
SMARCD1-203ENST00000547247 AK7Q96M32 723 aa30.01■■■□□ 2.39
SMARCD1-203ENST00000547247 CNTNAP4Q9C0A0 1308 aa30.01■■■□□ 2.39
SMARCD1-203ENST00000547247 SLC15A2Q16348 729 aa30■■■□□ 2.39
SMARCD1-203ENST00000547247 ZNF827Q17R98 1081 aa30■■■□□ 2.39
SMARCD1-203ENST00000547247 DUSP27Q5VZP5 1158 aa29.99■■■□□ 2.39
SMARCD1-203ENST00000547247 HOXB7P09629 217 aa29.98■■■□□ 2.39
SMARCD1-203ENST00000547247 C8orf58Q8NAV2 365 aa29.98■■■□□ 2.39
SMARCD1-203ENST00000547247 CCDC87Q9NVE4 849 aa29.98■■■□□ 2.39
SMARCD1-203ENST00000547247 ELL2O00472 640 aaPredicted RBP29.98■■■□□ 2.39
SMARCD1-203ENST00000547247 INTS5Q6P9B9 1019 aaKnown RBP29.97■■■□□ 2.39
SMARCD1-203ENST00000547247 TFCP2L1Q9NZI6 479 aa29.97■■■□□ 2.39
SMARCD1-203ENST00000547247 EXOSC9Q06265 439 aaKnown RBP29.96■■■□□ 2.39
SMARCD1-203ENST00000547247 TRMT2AQ8IZ69 625 aaKnown RBP29.96■■■□□ 2.39
SMARCD1-203ENST00000547247 YTHDC1Q96MU7 727 aaKnown RBP29.96■■■□□ 2.39
SMARCD1-203ENST00000547247 LAMB4A4D0S4 1761 aa29.96■■■□□ 2.39
SMARCD1-203ENST00000547247 GNPATO15228 680 aa29.95■■■□□ 2.39
SMARCD1-203ENST00000547247 EIF2S2P20042 333 aaKnown RBP29.95■■■□□ 2.39
SMARCD1-203ENST00000547247 TSPYL6Q8N831 410 aa29.95■■■□□ 2.39
SMARCD1-203ENST00000547247 SOS1Q07889 1333 aaPredicted RBP29.95■■■□□ 2.39
SMARCD1-203ENST00000547247 MYH14Q7Z406 1995 aaKnown RBP29.95■■■□□ 2.39
SMARCD1-203ENST00000547247 A1BGP04217 495 aa29.94■■■□□ 2.38
SMARCD1-203ENST00000547247 TWISTNBQ3B726 338 aaPredicted RBP29.94■■■□□ 2.38
SMARCD1-203ENST00000547247 ZBTB1Q9Y2K1 713 aa29.94■■■□□ 2.38
SMARCD1-203ENST00000547247 RTCBQ9Y3I0 505 aaKnown RBP29.94■■■□□ 2.38
SMARCD1-203ENST00000547247 TUBGCP6Q96RT7 1819 aa29.93■■■□□ 2.38
SMARCD1-203ENST00000547247 RPS6KA4O75676 772 aa29.93■■■□□ 2.38
SMARCD1-203ENST00000547247 CANXP27824 592 aaKnown RBP29.92■■■□□ 2.38
SMARCD1-203ENST00000547247 HDGFL1Q5TGJ6 251 aa29.91■■■□□ 2.38
SMARCD1-203ENST00000547247 CHMP4AQ9BY43 222 aa29.91■■■□□ 2.38
SMARCD1-203ENST00000547247 NECTIN2Q92692 538 aa29.9■■■□□ 2.38
SMARCD1-203ENST00000547247 CASZ1Q86V15 1759 aa29.9■■■□□ 2.38
SMARCD1-203ENST00000547247 SSFA2P28290 1259 aa29.9■■■□□ 2.38
SMARCD1-203ENST00000547247 QSER1Q2KHR3 1735 aa29.89■■■□□ 2.38
SMARCD1-203ENST00000547247 UBR3Q6ZT12 1888 aa29.89■■■□□ 2.38
SMARCD1-203ENST00000547247 ERBB4Q15303 1308 aa29.89■■■□□ 2.38
SMARCD1-203ENST00000547247 FLAD1Q8NFF5 587 aa29.89■■■□□ 2.38
SMARCD1-203ENST00000547247 IL6STP40189 918 aaPredicted RBP29.88■■■□□ 2.37
SMARCD1-203ENST00000547247 AMIGO3Q86WK7 504 aa29.88■■■□□ 2.37
SMARCD1-203ENST00000547247 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP29.87■■■□□ 2.37
SMARCD1-203ENST00000547247 PHF14O94880 888 aa29.87■■■□□ 2.37
SMARCD1-203ENST00000547247 PIP4K2AP48426 406 aaPredicted RBP29.87■■■□□ 2.37
SMARCD1-203ENST00000547247 PNPLA7Q6ZV29 1317 aa29.87■■■□□ 2.37
SMARCD1-203ENST00000547247 NBPF26B4DH59 902 aa29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 VAMP4O75379 141 aa29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 ADRA2BP18089 450 aa29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 NBPF10Q6P3W6 841 aaKnown RBP29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 SMIM5Q71RC9 77 aa29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 NBPF15Q8N660 670 aa29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 EIF5P55010 431 aaKnown RBP29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 TRAPPC3LQ5T215 181 aa29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 CCDC30Q5VVM6 783 aa29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 NPM2Q86SE8 214 aaKnown RBP29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 PDGFDQ9GZP0 370 aaPredicted RBP29.86■■■□□ 2.37
SMARCD1-203ENST00000547247 ZNF330Q9Y3S2 320 aaPredicted RBP29.85■■■□□ 2.37
SMARCD1-203ENST00000547247 DBF4Q9UBU7 674 aaPredicted RBP29.84■■■□□ 2.37
SMARCD1-203ENST00000547247 MYL6BP14649 208 aa29.83■■■□□ 2.37
SMARCD1-203ENST00000547247 PDIA6Q15084 440 aa29.83■■■□□ 2.37
SMARCD1-203ENST00000547247 COL23A1Q86Y22 540 aaPredicted RBP29.83■■■□□ 2.37
SMARCD1-203ENST00000547247 DDX21Q9NR30 783 aaKnown RBP eCLIP29.83■■■□□ 2.37
SMARCD1-203ENST00000547247 CHPF2Q9P2E5 772 aa29.83■■■□□ 2.37
SMARCD1-203ENST00000547247 COL15A1P39059 1388 aa29.82■■■□□ 2.36
SMARCD1-203ENST00000547247 ARHGEF1Q92888 912 aaKnown RBP29.82■■■□□ 2.36
SMARCD1-203ENST00000547247 MSH5O43196 834 aa29.81■■■□□ 2.36
SMARCD1-203ENST00000547247 SRCAPQ6ZRS2 3230 aa29.81■■■□□ 2.36
SMARCD1-203ENST00000547247 A0A087WZG4 1122 aa29.8■■■□□ 2.36
SMARCD1-203ENST00000547247 ANXA1P04083 346 aa29.8■■■□□ 2.36
SMARCD1-203ENST00000547247 CT47B1P0C2W7 299 aaPredicted RBP29.8■■■□□ 2.36
SMARCD1-203ENST00000547247 RFC4P35249 363 aa29.8■■■□□ 2.36
SMARCD1-203ENST00000547247 PROSER3Q2NL68 480 aa29.8■■■□□ 2.36
SMARCD1-203ENST00000547247 STK31Q9BXU1 1019 aa29.8■■■□□ 2.36
SMARCD1-203ENST00000547247 LRP5O75197 1615 aa29.78■■■□□ 2.36
SMARCD1-203ENST00000547247 LRP10Q7Z4F1 713 aa29.77■■■□□ 2.36
SMARCD1-203ENST00000547247 ARXQ96QS3 562 aa29.77■■■□□ 2.36
SMARCD1-203ENST00000547247 HYPKQ9NX55 129 aa29.77■■■□□ 2.36
SMARCD1-203ENST00000547247 TCERG1O14776 1098 aaKnown RBP29.77■■■□□ 2.36
SMARCD1-203ENST00000547247 ZNF428Q96B54 188 aa29.77■■■□□ 2.36
SMARCD1-203ENST00000547247 ZBTB7AO95365 584 aa29.75■■■□□ 2.35
SMARCD1-203ENST00000547247 DZIP3Q86Y13 1208 aaKnown RBP29.75■■■□□ 2.35
SMARCD1-203ENST00000547247 SLC16A10Q8TF71 515 aa29.75■■■□□ 2.35
SMARCD1-203ENST00000547247 TBC1D2BQ9UPU7 963 aa29.75■■■□□ 2.35
SMARCD1-203ENST00000547247 ZPR1O75312 459 aa29.74■■■□□ 2.35
SMARCD1-203ENST00000547247 NARFQ9UHQ1 456 aa29.74■■■□□ 2.35
SMARCD1-203ENST00000547247 C4AP0C0L4 1744 aa29.74■■■□□ 2.35
SMARCD1-203ENST00000547247 SLC4A2P04920 1241 aa29.73■■■□□ 2.35
SMARCD1-203ENST00000547247 USP42Q9H9J4 1324 aaKnown RBP29.73■■■□□ 2.35
SMARCD1-203ENST00000547247 COPS6Q7L5N1 327 aa29.72■■■□□ 2.35
SMARCD1-203ENST00000547247 SRP68Q9UHB9 627 aaKnown RBP29.72■■■□□ 2.35
SMARCD1-203ENST00000547247 AIMP1Q12904 312 aaKnown RBP29.71■■■□□ 2.35
SMARCD1-203ENST00000547247 TTLL7Q6ZT98 887 aa29.71■■■□□ 2.35
SMARCD1-203ENST00000547247 XAGE3Q8WTP9 111 aa29.71■■■□□ 2.35
SMARCD1-203ENST00000547247 SPON1Q9HCB6 807 aa29.71■■■□□ 2.35
SMARCD1-203ENST00000547247 KIF6Q6ZMV9 814 aa29.7■■■□□ 2.35
SMARCD1-203ENST00000547247 PHAXQ9H814 394 aaKnown RBP29.7■■■□□ 2.35
SMARCD1-203ENST00000547247 ALDH1L2Q3SY69 923 aa29.69■■■□□ 2.34
SMARCD1-203ENST00000547247 USPL1Q5W0Q7 1092 aa29.69■■■□□ 2.34
SMARCD1-203ENST00000547247 MTFR1LQ9H019 292 aa29.69■■■□□ 2.34
SMARCD1-203ENST00000547247 ATF5Q9Y2D1 282 aaPredicted RBP29.69■■■□□ 2.34
SMARCD1-203ENST00000547247 CAMTA2O94983 1202 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms