RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	PIP4K2A	P48426	406 aa	Predicted RBP	13.05	□□□□□ -0.32
CPSF7-221	ENST00000543545	TFCP2L1	Q9NZI6	479 aa		13.05	□□□□□ -0.32
CPSF7-221	ENST00000543545	KCP	Q6ZWJ8	1503 aa		13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	SOCS7	O14512	581 aa		13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	CT47B1	P0C2W7	299 aa	Predicted RBP	13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	RC3H1	Q5TC82	1133 aa	Known RBP	13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	INTS5	Q6P9B9	1019 aa	Known RBP	13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	ZBTB1	Q9Y2K1	713 aa		13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	RTCB	Q9Y3I0	505 aa	Known RBP	13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	EP400	Q96L91	3159 aa		13.04	□□□□□ -0.32
CPSF7-221	ENST00000543545	MSH5	O43196	834 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	PHF14	O94880	888 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	ANXA1	P04083	346 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	SLC4A2	P04920	1241 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	CHPF2	Q9P2E5	772 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	DBF4	Q9UBU7	674 aa	Predicted RBP	13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	BTAF1	O14981	1849 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	ITGB4	P16144	1822 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	CNTNAP4	Q9C0A0	1308 aa		13.03	□□□□□ -0.32
CPSF7-221	ENST00000543545	NBPF26	B4DH59	902 aa		13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	RPS6KA4	O75676	772 aa		13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	ZNF827	Q17R98	1081 aa		13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	NBPF10	Q6P3W6	841 aa	Known RBP	13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	NBPF15	Q8N660	670 aa		13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	ZNF428	Q96B54	188 aa		13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	BCL2L13	Q9BXK5	485 aa		13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	SMC4	Q9NTJ3	1288 aa		13.02	□□□□□ -0.33
CPSF7-221	ENST00000543545	IL6ST	P40189	918 aa	Predicted RBP	13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	AIMP1	Q12904	312 aa	Known RBP	13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	SLC15A2	Q16348	729 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	PROSER3	Q2NL68	480 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	TRAPPC3L	Q5T215	181 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	SMIM5	Q71RC9	77 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	AKT1S1	Q96B36	256 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	HYPK	Q9NX55	129 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	ERBB4	Q15303	1308 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545	SBF2	Q86WG5	1849 aa		13.01	□□□□□ -0.33
CPSF7-221	ENST00000543545		A0A087WZG4	1122 aa		13	□□□□□ -0.33
CPSF7-221	ENST00000543545	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13	□□□□□ -0.33
CPSF7-221	ENST00000543545	RFC4	P35249	363 aa		13	□□□□□ -0.33
CPSF7-221	ENST00000543545	PDIA6	Q15084	440 aa		13	□□□□□ -0.33
CPSF7-221	ENST00000543545	SSH1	Q8WYL5	1049 aa		13	□□□□□ -0.33
CPSF7-221	ENST00000543545	RARS	P54136	660 aa	Known RBP	12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	EIF5	P55010	431 aa	Known RBP	12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	ALDH1L2	Q3SY69	923 aa		12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	KIF6	Q6ZMV9	814 aa		12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	COPS6	Q7L5N1	327 aa		12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	FLAD1	Q8NFF5	587 aa		12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	XAGE3	Q8WTP9	111 aa		12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	RCAN3	Q9UKA8	241 aa		12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	TBC1D2B	Q9UPU7	963 aa		12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	SIPA1L3	O60292	1781 aa	Predicted RBP	12.99	□□□□□ -0.33
CPSF7-221	ENST00000543545	ZPR1	O75312	459 aa		12.98	□□□□□ -0.33
CPSF7-221	ENST00000543545	SSFA2	P28290	1259 aa		12.98	□□□□□ -0.33
CPSF7-221	ENST00000543545	R3HDM1	Q15032	1099 aa	Known RBP	12.98	□□□□□ -0.33
CPSF7-221	ENST00000543545	DZIP3	Q86Y13	1208 aa	Known RBP	12.98	□□□□□ -0.33
CPSF7-221	ENST00000543545	MRPL50	Q8N5N7	158 aa	Known RBP	12.98	□□□□□ -0.33
CPSF7-221	ENST00000543545	ARHGEF1	Q92888	912 aa	Known RBP	12.98	□□□□□ -0.33
CPSF7-221	ENST00000543545	PHAX	Q9H814	394 aa	Known RBP	12.98	□□□□□ -0.33
CPSF7-221	ENST00000543545	TNS1	Q9HBL0	1735 aa	Known RBP	12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	BCAR3	O75815	825 aa		12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	DDX58	O95786	925 aa	Known RBP	12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	ADRA2B	P18089	450 aa		12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	TTLL7	Q6ZT98	887 aa		12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	G2E3	Q7L622	706 aa		12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	AMIGO3	Q86WK7	504 aa		12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	FRAT1	Q92837	279 aa	Predicted RBP	12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	PAPPA	Q13219	1627 aa		12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	KDM3B	Q7LBC6	1761 aa		12.97	□□□□□ -0.33
CPSF7-221	ENST00000543545	PSD	A5PKW4	1024 aa	Predicted RBP	12.96	□□□□□ -0.33
CPSF7-221	ENST00000543545	CENPB	P07199	599 aa	Predicted RBP	12.96	□□□□□ -0.33
CPSF7-221	ENST00000543545	FLII	Q13045	1269 aa		12.96	□□□□□ -0.33
CPSF7-221	ENST00000543545	FKBP5	Q13451	457 aa	Predicted RBP	12.96	□□□□□ -0.33
CPSF7-221	ENST00000543545	RIC3	Q7Z5B4	369 aa		12.96	□□□□□ -0.33
CPSF7-221	ENST00000543545	COL23A1	Q86Y22	540 aa	Predicted RBP	12.96	□□□□□ -0.33
CPSF7-221	ENST00000543545	ZBTB3	Q9H5J0	574 aa		12.96	□□□□□ -0.33
CPSF7-221	ENST00000543545	COL15A1	P39059	1388 aa		12.95	□□□□□ -0.34
CPSF7-221	ENST00000543545	PNPLA7	Q6ZV29	1317 aa		12.95	□□□□□ -0.34
CPSF7-221	ENST00000543545	IPO8	O15397	1037 aa	Known RBP	12.95	□□□□□ -0.34
CPSF7-221	ENST00000543545	ANKRD13D	Q6ZTN6	518 aa		12.95	□□□□□ -0.34
CPSF7-221	ENST00000543545	SRP68	Q9UHB9	627 aa	Known RBP	12.95	□□□□□ -0.34
CPSF7-221	ENST00000543545	NOB1	Q9ULX3	412 aa	Known RBP	12.95	□□□□□ -0.34
CPSF7-221	ENST00000543545	USPL1	Q5W0Q7	1092 aa		12.94	□□□□□ -0.34
CPSF7-221	ENST00000543545	LRP10	Q7Z4F1	713 aa		12.94	□□□□□ -0.34
CPSF7-221	ENST00000543545	NARF	Q9UHQ1	456 aa		12.94	□□□□□ -0.34
CPSF7-221	ENST00000543545	MAP3K15	Q6ZN16	1313 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	KIF16B	Q96L93	1317 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	VIRMA	Q69YN4	1812 aa	Known RBP	12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	PI4KAP2	A4QPH2	592 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	KSR2	Q6VAB6	950 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	PI4KAP1	Q8N8J0	262 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	PLBD2	Q8NHP8	589 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	ZNF652	Q9Y2D9	606 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	UBR2	Q8IWV8	1755 aa		12.93	□□□□□ -0.34
CPSF7-221	ENST00000543545	ERVV-1	B6SEH8	477 aa		12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	CAMTA2	O94983	1202 aa		12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	HLF	Q16534	295 aa		12.92	□□□□□ -0.34
CPSF7-221	ENST00000543545	ZKSCAN2	Q63HK3	967 aa		12.92	□□□□□ -0.34

Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms