RNA–Protein interactions for RNA: ENST00000542832.1

DDX47-208, Transcript of DEAD-box helicase 47, human

TSL 5

Gene DDX47, Length 554 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX47-208	ENST00000542832	RCAN3	Q9UKA8	241 aa		11.4	□□□□□ -0.58
DDX47-208	ENST00000542832	DISP2	A7MBM2	1401 aa		11.4	□□□□□ -0.58
DDX47-208	ENST00000542832	HMGB2	P26583	209 aa	Known RBP	11.39	□□□□□ -0.59
DDX47-208	ENST00000542832	DDB1	Q16531	1140 aa		11.39	□□□□□ -0.59
DDX47-208	ENST00000542832	MCM10	Q7L590	875 aa		11.39	□□□□□ -0.59
DDX47-208	ENST00000542832	EFCAB3	Q8N7B9	438 aa		11.39	□□□□□ -0.59
DDX47-208	ENST00000542832	FANCI	Q9NVI1	1328 aa		11.38	□□□□□ -0.59
DDX47-208	ENST00000542832		G3V3G9	751 aa		11.38	□□□□□ -0.59
DDX47-208	ENST00000542832	SLC52A2	Q9HAB3	445 aa		11.38	□□□□□ -0.59
DDX47-208	ENST00000542832	MBIP	Q9NS73	344 aa		11.38	□□□□□ -0.59
DDX47-208	ENST00000542832	MEGF6	O75095	1541 aa		11.38	□□□□□ -0.59
DDX47-208	ENST00000542832	MS4A1	P11836	297 aa		11.37	□□□□□ -0.59
DDX47-208	ENST00000542832	MPRIP	Q6WCQ1	1025 aa		11.37	□□□□□ -0.59
DDX47-208	ENST00000542832	QTRT2	Q9H974	415 aa	Known RBP	11.37	□□□□□ -0.59
DDX47-208	ENST00000542832	LGR6	Q9HBX8	967 aa		11.37	□□□□□ -0.59
DDX47-208	ENST00000542832	TSPYL4	Q9UJ04	414 aa		11.37	□□□□□ -0.59
DDX47-208	ENST00000542832	AFF2	P51816	1311 aa		11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	BCL9	O00512	1426 aa		11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	BTBD11	A6QL63	1104 aa		11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	VAMP4	O75379	141 aa		11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	DCTN1	Q14203	1278 aa		11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	ARHGAP45	Q92619	1136 aa		11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	RNF25	Q96BH1	459 aa	Predicted RBP	11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	USP35	Q9P2H5	1018 aa		11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	CCDC9	Q9Y3X0	531 aa	Known RBP	11.36	□□□□□ -0.59
DDX47-208	ENST00000542832	LRP6	O75581	1613 aa		11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	PARP4	Q9UKK3	1724 aa	Known RBP	11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	RIOK3	O14730	519 aa	Known RBP	11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	IPO8	O15397	1037 aa	Known RBP	11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	RARS	P54136	660 aa	Known RBP	11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	CABP4	P57796	275 aa		11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	EXOSC9	Q06265	439 aa	Known RBP	11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	AAMP	Q13685	434 aa		11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	ADAMTS7	Q9UKP4	1686 aa		11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	RGPD2	P0DJD1	1756 aa		11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	PKD1L3	Q7Z443	1732 aa		11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	ATRN	O75882	1429 aa		11.35	□□□□□ -0.59
DDX47-208	ENST00000542832	PLCH1	Q4KWH8	1693 aa		11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	HEG1	Q9ULI3	1381 aa		11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	RBM6	P78332	1123 aa	Known RBP	11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	TWISTNB	Q3B726	338 aa	Predicted RBP	11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	ZNF790	Q6PG37	636 aa		11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	NFATC2IP	Q8NCF5	419 aa		11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	DDX54	Q8TDD1	881 aa	Known RBP	11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	THUMPD2	Q9BTF0	503 aa	Known RBP	11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	LAS1L	Q9Y4W2	734 aa	Known RBP	11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	DLG5	Q8TDM6	1919 aa		11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	NRAP	Q86VF7	1730 aa		11.34	□□□□□ -0.59
DDX47-208	ENST00000542832	EMP3	P54852	163 aa		11.33	□□□□□ -0.6
DDX47-208	ENST00000542832	EIF4A1	P60842	406 aa	Known RBP	11.33	□□□□□ -0.6
DDX47-208	ENST00000542832	PDE3A	Q14432	1141 aa		11.33	□□□□□ -0.6
DDX47-208	ENST00000542832	VSIG10	Q8N0Z9	540 aa		11.33	□□□□□ -0.6
DDX47-208	ENST00000542832	TSR2	Q969E8	191 aa	Known RBP	11.33	□□□□□ -0.6
DDX47-208	ENST00000542832	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.33	□□□□□ -0.6
DDX47-208	ENST00000542832	TNS2	Q63HR2	1409 aa		11.33	□□□□□ -0.6
DDX47-208	ENST00000542832	NEFL	P07196	543 aa		11.32	□□□□□ -0.6
DDX47-208	ENST00000542832	CCDC30	Q5VVM6	783 aa		11.32	□□□□□ -0.6
DDX47-208	ENST00000542832	SENP3-EIF4A1	A0A087X0R7	540 aa		11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	SNRPA1	P09661	255 aa	Known RBP	11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	FAM98C	Q17RN3	349 aa	Known RBP	11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	TTC5	Q8N0Z6	440 aa		11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	FMNL2	Q96PY5	1086 aa		11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	CHMP4B	Q9H444	224 aa	Known RBP	11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	TMOD3	Q9NYL9	352 aa		11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	KIF16B	Q96L93	1317 aa		11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	MRC1	P22897	1456 aa		11.31	□□□□□ -0.6
DDX47-208	ENST00000542832	KDM6A	O15550	1401 aa	Predicted RBP	11.3	□□□□□ -0.6
DDX47-208	ENST00000542832	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.3	□□□□□ -0.6
DDX47-208	ENST00000542832	GIGYF1	O75420	1035 aa	Predicted RBP	11.3	□□□□□ -0.6
DDX47-208	ENST00000542832	C8orf58	Q8NAV2	365 aa		11.3	□□□□□ -0.6
DDX47-208	ENST00000542832	SMARCC1	Q92922	1105 aa	Predicted RBP	11.3	□□□□□ -0.6
DDX47-208	ENST00000542832	ZFP91	Q96JP5	570 aa	Predicted RBP	11.3	□□□□□ -0.6
DDX47-208	ENST00000542832	ERBB4	Q15303	1308 aa		11.3	□□□□□ -0.6
DDX47-208	ENST00000542832	LRRC37A3	O60309	1634 aa		11.29	□□□□□ -0.6
DDX47-208	ENST00000542832	HOXB3	P14651	431 aa	Predicted RBP	11.29	□□□□□ -0.6
DDX47-208	ENST00000542832	RRP1	P56182	461 aa	Known RBP	11.29	□□□□□ -0.6
DDX47-208	ENST00000542832	MARCH10	Q8NA82	808 aa	Predicted RBP	11.29	□□□□□ -0.6
DDX47-208	ENST00000542832	STK31	Q9BXU1	1019 aa		11.29	□□□□□ -0.6
DDX47-208	ENST00000542832	RXRB	P28702	533 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	ZKSCAN2	Q63HK3	967 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	FAM196A	Q6ZSG2	479 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	SEPT12	Q8IYM1	358 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	TSPYL6	Q8N831	410 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	SSH1	Q8WYL5	1049 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	MIS18A	Q9NYP9	233 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	DBF4	Q9UBU7	674 aa	Predicted RBP	11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	PTPRC	P08575	1304 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	SCN11A	Q9UI33	1791 aa		11.28	□□□□□ -0.6
DDX47-208	ENST00000542832	SPNS2	Q8IVW8	549 aa		11.27	□□□□□ -0.61
DDX47-208	ENST00000542832	PIGB	Q92521	554 aa		11.27	□□□□□ -0.61
DDX47-208	ENST00000542832	POTEB3	A0JP26	581 aa		11.26	□□□□□ -0.61
DDX47-208	ENST00000542832	PRIM1	P49642	420 aa	Known RBP	11.26	□□□□□ -0.61
DDX47-208	ENST00000542832	POTEB	Q6S5H4	581 aa		11.26	□□□□□ -0.61
DDX47-208	ENST00000542832	ATF7IP	Q6VMQ6	1270 aa		11.26	□□□□□ -0.61
DDX47-208	ENST00000542832	MRPL50	Q8N5N7	158 aa	Known RBP	11.26	□□□□□ -0.61
DDX47-208	ENST00000542832	HS3ST6	Q96QI5	342 aa		11.26	□□□□□ -0.61
DDX47-208	ENST00000542832	API5	Q9BZZ5	524 aa	Known RBP	11.26	□□□□□ -0.61
DDX47-208	ENST00000542832	SMC4	Q9NTJ3	1288 aa		11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms