RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 THUMPD2Q9BTF0 503 aaKnown RBP16.28■□□□□ 0.2
VPS33A-207ENST00000542790 SCN11AQ9UI33 1791 aa16.28■□□□□ 0.2
VPS33A-207ENST00000542790 PNPLA7Q6ZV29 1317 aa16.27■□□□□ 0.2
VPS33A-207ENST00000542790 TEX13AQ9BXU3 409 aaPredicted RBP16.27■□□□□ 0.2
VPS33A-207ENST00000542790 PDGFDQ9GZP0 370 aaPredicted RBP16.27■□□□□ 0.2
VPS33A-207ENST00000542790 CNTNAP4Q9C0A0 1308 aa16.26■□□□□ 0.19
VPS33A-207ENST00000542790 GNPATO15228 680 aa16.26■□□□□ 0.19
VPS33A-207ENST00000542790 DNAJC10Q8IXB1 793 aa16.26■□□□□ 0.19
VPS33A-207ENST00000542790 MIER1Q8N108 512 aa16.26■□□□□ 0.19
VPS33A-207ENST00000542790 SLC16A10Q8TF71 515 aa16.26■□□□□ 0.19
VPS33A-207ENST00000542790 TRIM35Q9UPQ4 493 aa16.26■□□□□ 0.19
VPS33A-207ENST00000542790 CCER2I3L3R5 266 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 KCNQ3O43525 872 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 STARD3NLO95772 234 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 SSFA2P28290 1259 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 FAM9BQ8IZU0 186 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 SP7Q8TDD2 431 aaPredicted RBP16.25■□□□□ 0.19
VPS33A-207ENST00000542790 MTFR1LQ9H019 292 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 SPON1Q9HCB6 807 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 BABAM1Q9NWV8 329 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 MIS18AQ9NYP9 233 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 RTCBQ9Y3I0 505 aaKnown RBP16.25■□□□□ 0.19
VPS33A-207ENST00000542790 HEG1Q9ULI3 1381 aa16.25■□□□□ 0.19
VPS33A-207ENST00000542790 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.24■□□□□ 0.19
VPS33A-207ENST00000542790 ZBTB7AO95365 584 aa16.24■□□□□ 0.19
VPS33A-207ENST00000542790 COL23A1Q86Y22 540 aaPredicted RBP16.24■□□□□ 0.19
VPS33A-207ENST00000542790 RPS6KA4O75676 772 aa16.23■□□□□ 0.19
VPS33A-207ENST00000542790 PHF14O94880 888 aa16.23■□□□□ 0.19
VPS33A-207ENST00000542790 SNRPA1P09661 255 aaKnown RBP16.23■□□□□ 0.19
VPS33A-207ENST00000542790 CYP19A1P11511 503 aaPredicted RBP16.23■□□□□ 0.19
VPS33A-207ENST00000542790 CRKLP46109 303 aaKnown RBP16.23■□□□□ 0.19
VPS33A-207ENST00000542790 TRAPPC3LQ5T215 181 aa16.23■□□□□ 0.19
VPS33A-207ENST00000542790 KCPQ6ZWJ8 1503 aa16.23■□□□□ 0.19
VPS33A-207ENST00000542790 CALD1Q05682 793 aaKnown RBP16.22■□□□□ 0.19
VPS33A-207ENST00000542790 INTS5Q6P9B9 1019 aaKnown RBP16.22■□□□□ 0.19
VPS33A-207ENST00000542790 CCDC87Q9NVE4 849 aa16.22■□□□□ 0.19
VPS33A-207ENST00000542790 TSPYL4Q9UJ04 414 aa16.22■□□□□ 0.19
VPS33A-207ENST00000542790 FBXO3Q9UK99 471 aa16.22■□□□□ 0.19
VPS33A-207ENST00000542790 AMIGO3Q86WK7 504 aa16.21■□□□□ 0.19
VPS33A-207ENST00000542790 ZNF831Q5JPB2 1677 aa16.21■□□□□ 0.18
VPS33A-207ENST00000542790 C4BP0C0L5 1744 aa16.2■□□□□ 0.18
VPS33A-207ENST00000542790 CD44P16070 742 aaKnown RBP16.2■□□□□ 0.18
VPS33A-207ENST00000542790 EIF4A1P60842 406 aaKnown RBP16.2■□□□□ 0.18
VPS33A-207ENST00000542790 CCDC27Q2M243 656 aa16.2■□□□□ 0.18
VPS33A-207ENST00000542790 C5P01031 1676 aa16.2■□□□□ 0.18
VPS33A-207ENST00000542790 CHL1O00533 1208 aa16.19■□□□□ 0.18
VPS33A-207ENST00000542790 SMIM5Q71RC9 77 aa16.19■□□□□ 0.18
VPS33A-207ENST00000542790 CFAP44Q96MT7 982 aa16.19■□□□□ 0.18
VPS33A-207ENST00000542790 LAS1LQ9Y4W2 734 aaKnown RBP16.19■□□□□ 0.18
VPS33A-207ENST00000542790 RFC4P35249 363 aa16.18■□□□□ 0.18
VPS33A-207ENST00000542790 PLCD3Q8N3E9 789 aa16.18■□□□□ 0.18
VPS33A-207ENST00000542790 NGEFQ8N5V2 710 aa16.18■□□□□ 0.18
VPS33A-207ENST00000542790 ARHGEF1Q92888 912 aaKnown RBP16.18■□□□□ 0.18
VPS33A-207ENST00000542790 USP16Q9Y5T5 823 aa16.18■□□□□ 0.18
VPS33A-207ENST00000542790 GIGYF1O75420 1035 aaPredicted RBP16.17■□□□□ 0.18
VPS33A-207ENST00000542790 CANXP27824 592 aaKnown RBP16.17■□□□□ 0.18
VPS33A-207ENST00000542790 POLD1P28340 1107 aa16.17■□□□□ 0.18
VPS33A-207ENST00000542790 PTGER2P43116 358 aa16.17■□□□□ 0.18
VPS33A-207ENST00000542790 PPP1R1BQ9UD71 204 aaPredicted RBP16.17■□□□□ 0.18
VPS33A-207ENST00000542790 ZBTB1Q9Y2K1 713 aa16.17■□□□□ 0.18
VPS33A-207ENST00000542790 PRAMEF22A3QJZ6 481 aa16.16■□□□□ 0.18
VPS33A-207ENST00000542790 GNAI1P63096 354 aa16.16■□□□□ 0.18
VPS33A-207ENST00000542790 NPM2Q86SE8 214 aaKnown RBP16.16■□□□□ 0.18
VPS33A-207ENST00000542790 WWC1Q8IX03 1113 aa16.16■□□□□ 0.18
VPS33A-207ENST00000542790 IFT57Q9NWB7 429 aa16.16■□□□□ 0.18
VPS33A-207ENST00000542790 SOS1Q07889 1333 aaPredicted RBP16.16■□□□□ 0.18
VPS33A-207ENST00000542790 SIPA1L3O60292 1781 aaPredicted RBP16.15■□□□□ 0.18
VPS33A-207ENST00000542790 SENP3-EIF4A1A0A087X0R7 540 aa16.15■□□□□ 0.18
VPS33A-207ENST00000542790 A1BGP04217 495 aa16.15■□□□□ 0.18
VPS33A-207ENST00000542790 SGIP1Q9BQI5 828 aa16.15■□□□□ 0.18
VPS33A-207ENST00000542790 CASZ1Q86V15 1759 aa16.15■□□□□ 0.18
VPS33A-207ENST00000542790 CICQ96RK0 1608 aaPredicted RBP16.15■□□□□ 0.18
VPS33A-207ENST00000542790 A0A087WZG4 1122 aa16.14■□□□□ 0.17
VPS33A-207ENST00000542790 ZNF853P0CG23 659 aa16.14■□□□□ 0.17
VPS33A-207ENST00000542790 IL6STP40189 918 aaPredicted RBP16.14■□□□□ 0.17
VPS33A-207ENST00000542790 EIF5P55010 431 aaKnown RBP16.14■□□□□ 0.17
VPS33A-207ENST00000542790 NLGN1Q8N2Q7 840 aa16.14■□□□□ 0.17
VPS33A-207ENST00000542790 TAF1LQ8IZX4 1826 aa16.13■□□□□ 0.17
VPS33A-207ENST00000542790 ZPR1O75312 459 aa16.13■□□□□ 0.17
VPS33A-207ENST00000542790 MSL1Q68DK7 614 aa16.13■□□□□ 0.17
VPS33A-207ENST00000542790 ARXQ96QS3 562 aa16.13■□□□□ 0.17
VPS33A-207ENST00000542790 MBIPQ9NS73 344 aa16.13■□□□□ 0.17
VPS33A-207ENST00000542790 SALL2Q9Y467 1007 aaPredicted RBP16.13■□□□□ 0.17
VPS33A-207ENST00000542790 TJP1Q07157 1748 aa16.13■□□□□ 0.17
VPS33A-207ENST00000542790 UBR2Q8IWV8 1755 aa16.13■□□□□ 0.17
VPS33A-207ENST00000542790 WDR63Q8IWG1 891 aa16.12■□□□□ 0.17
VPS33A-207ENST00000542790 ZNF330Q9Y3S2 320 aaPredicted RBP16.12■□□□□ 0.17
VPS33A-207ENST00000542790 IL16Q14005 1332 aa16.12■□□□□ 0.17
VPS33A-207ENST00000542790 USP42Q9H9J4 1324 aaKnown RBP16.12■□□□□ 0.17
VPS33A-207ENST00000542790 LRP5O75197 1615 aa16.12■□□□□ 0.17
VPS33A-207ENST00000542790 COL15A1P39059 1388 aa16.12■□□□□ 0.17
VPS33A-207ENST00000542790 DLG5Q8TDM6 1919 aa16.11■□□□□ 0.17
VPS33A-207ENST00000542790 COL5A3P25940 1745 aaPredicted RBP16.11■□□□□ 0.17
VPS33A-207ENST00000542790 QSER1Q2KHR3 1735 aa16.11■□□□□ 0.17
VPS33A-207ENST00000542790 GYS1P13807 737 aa16.11■□□□□ 0.17
VPS33A-207ENST00000542790 NARFQ9UHQ1 456 aa16.11■□□□□ 0.17
VPS33A-207ENST00000542790 HOXB7P09629 217 aa16.1■□□□□ 0.17
VPS33A-207ENST00000542790 VASPP50552 380 aaPredicted RBP16.1■□□□□ 0.17
VPS33A-207ENST00000542790 SRP68Q9UHB9 627 aaKnown RBP16.1■□□□□ 0.17
VPS33A-207ENST00000542790 VIRMAQ69YN4 1812 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms