RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 FKBP8Q14318 412 aa4.81□□□□□ -1.64
CHD4-209ENST00000542717 RAPGEF4Q8WZA2 1011 aa4.81□□□□□ -1.64
CHD4-209ENST00000542717 ZIC5Q96T25 663 aa4.81□□□□□ -1.64
CHD4-209ENST00000542717 RNF186Q9NXI6 227 aa4.81□□□□□ -1.64
CHD4-209ENST00000542717 SAGE1Q9NXZ1 904 aa4.81□□□□□ -1.64
CHD4-209ENST00000542717 TTC21AQ8NDW8 1320 aa4.8□□□□□ -1.64
CHD4-209ENST00000542717 PCDH11XQ9BZA7 1347 aa4.8□□□□□ -1.64
CHD4-209ENST00000542717 PCDH11YQ9BZA8 1340 aa4.8□□□□□ -1.64
CHD4-209ENST00000542717 ADGRB1O14514 1584 aa4.8□□□□□ -1.64
CHD4-209ENST00000542717 TATP17735 454 aaPredicted RBP4.8□□□□□ -1.64
CHD4-209ENST00000542717 FBXO46Q6PJ61 603 aaPredicted RBP4.8□□□□□ -1.64
CHD4-209ENST00000542717 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.8□□□□□ -1.64
CHD4-209ENST00000542717 PIGBQ92521 554 aa4.8□□□□□ -1.64
CHD4-209ENST00000542717 HHIPL1Q96JK4 782 aa4.8□□□□□ -1.64
CHD4-209ENST00000542717 RBM42Q9BTD8 480 aaKnown RBP4.8□□□□□ -1.64
CHD4-209ENST00000542717 TMOD3Q9NYL9 352 aa4.8□□□□□ -1.64
CHD4-209ENST00000542717 SRP68Q9UHB9 627 aaKnown RBP4.8□□□□□ -1.64
CHD4-209ENST00000542717 DICER1Q9UPY3 1922 aaKnown RBP4.8□□□□□ -1.64
CHD4-209ENST00000542717 ZNF541Q9H0D2 1346 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 NFAT5O94916 1531 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 POTEFA5A3E0 1075 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 H0YGN5 161 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 POLRMTO00411 1230 aaKnown RBP4.79□□□□□ -1.64
CHD4-209ENST00000542717 ZPR1O75312 459 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 RPS6KA4O75676 772 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 PLA2G5P39877 138 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 HUNKP57058 714 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 KIF23Q02241 960 aaPredicted RBP4.79□□□□□ -1.64
CHD4-209ENST00000542717 ZNF692Q9BU19 519 aaPredicted RBP4.79□□□□□ -1.64
CHD4-209ENST00000542717 RBM27Q9P2N5 1060 aaKnown RBP4.79□□□□□ -1.64
CHD4-209ENST00000542717 RAPGEFL1Q9UHV5 662 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 ASAP1Q9ULH1 1129 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 GJA3Q9Y6H8 435 aa4.79□□□□□ -1.64
CHD4-209ENST00000542717 CGNL1Q0VF96 1302 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 LTBP3Q9NS15 1303 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 TRPM7Q96QT4 1865 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 AMPHP49418 695 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 SOGA3Q5TF21 947 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 INTS3Q68E01 1043 aaKnown RBP4.78□□□□□ -1.64
CHD4-209ENST00000542717 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.78□□□□□ -1.64
CHD4-209ENST00000542717 USHBP1Q8N6Y0 703 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 IP6K1Q92551 441 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 OTUD5Q96G74 571 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 USP31Q70CQ4 1352 aa4.78□□□□□ -1.64
CHD4-209ENST00000542717 COL6A3P12111 3177 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 USP42Q9H9J4 1324 aaKnown RBP4.77□□□□□ -1.65
CHD4-209ENST00000542717 SERPINB2P05120 415 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 EN2P19622 333 aaPredicted RBP4.77□□□□□ -1.65
CHD4-209ENST00000542717 RC3H1Q5TC82 1133 aaKnown RBP4.77□□□□□ -1.65
CHD4-209ENST00000542717 ANKRD13DQ6ZTN6 518 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 GPC2Q8N158 579 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 DCAF11Q8TEB1 546 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 CCDC102AQ96A19 550 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 SNX27Q96L92 541 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 GLIS2Q9BZE0 524 aaPredicted RBP4.77□□□□□ -1.65
CHD4-209ENST00000542717 LTN1O94822 1766 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 ADAMTSL1Q8N6G6 1762 aa4.77□□□□□ -1.65
CHD4-209ENST00000542717 SMG6Q86US8 1419 aaKnown RBP4.77□□□□□ -1.65
CHD4-209ENST00000542717 MKI67P46013 3256 aaKnown RBP4.76□□□□□ -1.65
CHD4-209ENST00000542717 SZT2Q5T011 3432 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 NPHP1O15259 732 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 TM4SF1P30408 202 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 EPS15P42566 896 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 ZNF157P51786 506 aaPredicted RBP4.76□□□□□ -1.65
CHD4-209ENST00000542717 EIF6P56537 245 aaKnown RBP4.76□□□□□ -1.65
CHD4-209ENST00000542717 USPL1Q5W0Q7 1092 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 RGMBQ6NW40 437 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 USP50Q70EL3 339 aaPredicted RBP4.76□□□□□ -1.65
CHD4-209ENST00000542717 NME9Q86XW9 330 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 ZNF296Q8WUU4 475 aaPredicted RBP4.76□□□□□ -1.65
CHD4-209ENST00000542717 JDP2Q8WYK2 163 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 DPF3Q92784 378 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 CNKSR1Q969H4 720 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 LRCH3Q96II8 777 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 TMEM106CQ9BVX2 250 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 ZNF277Q9NRM2 450 aaPredicted RBP4.76□□□□□ -1.65
CHD4-209ENST00000542717 ATG3Q9NT62 314 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 STXBP5LQ9Y2K9 1186 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 KTN1Q86UP2 1357 aaKnown RBP4.76□□□□□ -1.65
CHD4-209ENST00000542717 AKAP11Q9UKA4 1901 aa4.76□□□□□ -1.65
CHD4-209ENST00000542717 CD163L1Q9NR16 1453 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 CNTNAP4Q9C0A0 1308 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 ITGB4P16144 1822 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 TMEM265A0A087WTH1 108 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 CYP27B1O15528 508 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 TBC1D8O95759 1140 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 HOXD11P31277 338 aaPredicted RBP4.75□□□□□ -1.65
CHD4-209ENST00000542717 PDE6BP35913 854 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 NFIXQ14938 502 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 CCDC93Q567U6 631 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 DEFB123Q8N688 67 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 PDZRN3Q9UPQ7 1066 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 FER1L6Q2WGJ9 1857 aa4.75□□□□□ -1.65
CHD4-209ENST00000542717 KIAA0100Q14667 2235 aaKnown RBP4.74□□□□□ -1.65
CHD4-209ENST00000542717 CENPJQ9HC77 1338 aaPredicted RBP4.74□□□□□ -1.65
CHD4-209ENST00000542717 MAP2P11137 1827 aaKnown RBP4.74□□□□□ -1.65
CHD4-209ENST00000542717 FAM208AQ9UK61 1670 aaKnown RBP4.74□□□□□ -1.65
CHD4-209ENST00000542717 FAM155AB1AL88 458 aaPredicted RBP4.74□□□□□ -1.65
CHD4-209ENST00000542717 IARSP41252 1262 aaKnown RBP4.74□□□□□ -1.65
CHD4-209ENST00000542717 CRKLP46109 303 aaKnown RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms