RNA–Protein interactions for RNA: ENST00000542552.1

ECHDC2-223, Transcript of enoyl-CoA hydratase domain containing 2, humanhuman

TSL 1 (best)

Gene ECHDC2, Length 981 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC2-223ENST00000542552 KDM3BQ7LBC6 1761 aa20.41■□□□□ 0.86
ECHDC2-223ENST00000542552 RIPK4P57078 832 aa20.4■□□□□ 0.86
ECHDC2-223ENST00000542552 NLGN1Q8N2Q7 840 aa20.4■□□□□ 0.86
ECHDC2-223ENST00000542552 USP42Q9H9J4 1324 aaKnown RBP20.39■□□□□ 0.85
ECHDC2-223ENST00000542552 CCDC146Q8IYE0 955 aa20.39■□□□□ 0.85
ECHDC2-223ENST00000542552 THUMPD2Q9BTF0 503 aaKnown RBP20.39■□□□□ 0.85
ECHDC2-223ENST00000542552 PNISRQ8TF01 805 aaKnown RBP20.38■□□□□ 0.85
ECHDC2-223ENST00000542552 MIS18AQ9NYP9 233 aa20.38■□□□□ 0.85
ECHDC2-223ENST00000542552 SRP68Q9UHB9 627 aaKnown RBP20.38■□□□□ 0.85
ECHDC2-223ENST00000542552 COL15A1P39059 1388 aa20.37■□□□□ 0.85
ECHDC2-223ENST00000542552 MMP10P09238 476 aa20.37■□□□□ 0.85
ECHDC2-223ENST00000542552 EIF5P55010 431 aaKnown RBP20.37■□□□□ 0.85
ECHDC2-223ENST00000542552 CCDC184Q52MB2 194 aa20.37■□□□□ 0.85
ECHDC2-223ENST00000542552 CD2APQ9Y5K6 639 aa20.37■□□□□ 0.85
ECHDC2-223ENST00000542552 SNRPA1P09661 255 aaKnown RBP20.36■□□□□ 0.85
ECHDC2-223ENST00000542552 NLGN2Q8NFZ4 835 aa20.36■□□□□ 0.85
ECHDC2-223ENST00000542552 USP16Q9Y5T5 823 aa20.36■□□□□ 0.85
ECHDC2-223ENST00000542552 PRAMEF22A3QJZ6 481 aa20.35■□□□□ 0.85
ECHDC2-223ENST00000542552 CANXP27824 592 aaKnown RBP20.35■□□□□ 0.85
ECHDC2-223ENST00000542552 LMOD3Q0VAK6 560 aa20.35■□□□□ 0.85
ECHDC2-223ENST00000542552 KLHL34Q8N239 644 aa20.35■□□□□ 0.85
ECHDC2-223ENST00000542552 NARFQ9UHQ1 456 aa20.35■□□□□ 0.85
ECHDC2-223ENST00000542552 A1BGP04217 495 aa20.34■□□□□ 0.85
ECHDC2-223ENST00000542552 FKBP8Q14318 412 aa20.34■□□□□ 0.85
ECHDC2-223ENST00000542552 TRIM35Q9UPQ4 493 aa20.34■□□□□ 0.85
ECHDC2-223ENST00000542552 RRP7AQ9Y3A4 280 aaKnown RBP20.34■□□□□ 0.85
ECHDC2-223ENST00000542552 KIF13BQ9NQT8 1826 aa20.34■□□□□ 0.85
ECHDC2-223ENST00000542552 ANP32CO43423 234 aa20.33■□□□□ 0.85
ECHDC2-223ENST00000542552 ZPR1O75312 459 aa20.33■□□□□ 0.85
ECHDC2-223ENST00000542552 IL6STP40189 918 aaPredicted RBP20.33■□□□□ 0.85
ECHDC2-223ENST00000542552 USPL1Q5W0Q7 1092 aa20.33■□□□□ 0.85
ECHDC2-223ENST00000542552 BABAM1Q9NWV8 329 aa20.33■□□□□ 0.85
ECHDC2-223ENST00000542552 DCAF8L1A6NGE4 600 aa20.32■□□□□ 0.84
ECHDC2-223ENST00000542552 TM4SF1P30408 202 aa20.32■□□□□ 0.84
ECHDC2-223ENST00000542552 EIF4A1P60842 406 aaKnown RBP20.32■□□□□ 0.84
ECHDC2-223ENST00000542552 LAMB4A4D0S4 1761 aa20.31■□□□□ 0.84
ECHDC2-223ENST00000542552 A0A087WZG4 1122 aa20.31■□□□□ 0.84
ECHDC2-223ENST00000542552 NEUROD2Q15784 382 aa20.31■□□□□ 0.84
ECHDC2-223ENST00000542552 BCL2L12Q9HB09 334 aa20.31■□□□□ 0.84
ECHDC2-223ENST00000542552 GIGYF1O75420 1035 aaPredicted RBP20.3■□□□□ 0.84
ECHDC2-223ENST00000542552 DDR1Q08345 913 aa20.29■□□□□ 0.84
ECHDC2-223ENST00000542552 PARP3Q9Y6F1 533 aa20.29■□□□□ 0.84
ECHDC2-223ENST00000542552 SCN7AQ01118 1682 aa20.29■□□□□ 0.84
ECHDC2-223ENST00000542552 C10orf71Q711Q0 1435 aa20.28■□□□□ 0.84
ECHDC2-223ENST00000542552 KIAA1551Q9HCM1 1747 aa20.28■□□□□ 0.84
ECHDC2-223ENST00000542552 NBPF26B4DH59 902 aa20.28■□□□□ 0.84
ECHDC2-223ENST00000542552 NBPF10Q6P3W6 841 aaKnown RBP20.28■□□□□ 0.84
ECHDC2-223ENST00000542552 NBPF15Q8N660 670 aa20.28■□□□□ 0.84
ECHDC2-223ENST00000542552 TSPYL4Q9UJ04 414 aa20.28■□□□□ 0.84
ECHDC2-223ENST00000542552 POLRMTO00411 1230 aaKnown RBP20.27■□□□□ 0.84
ECHDC2-223ENST00000542552 CHL1O00533 1208 aa20.27■□□□□ 0.84
ECHDC2-223ENST00000542552 APAF1O14727 1248 aa20.27■□□□□ 0.84
ECHDC2-223ENST00000542552 PIP4K2AP48426 406 aaPredicted RBP20.26■□□□□ 0.83
ECHDC2-223ENST00000542552 NFIXQ14938 502 aa20.26■□□□□ 0.83
ECHDC2-223ENST00000542552 TBC1D2BQ9UPU7 963 aa20.26■□□□□ 0.83
ECHDC2-223ENST00000542552 NRXN2Q9P2S2 1712 aa20.26■□□□□ 0.83
ECHDC2-223ENST00000542552 BCORQ6W2J9 1755 aa20.26■□□□□ 0.83
ECHDC2-223ENST00000542552 GPR162Q16538 588 aa20.25■□□□□ 0.83
ECHDC2-223ENST00000542552 MRS2Q9HD23 443 aa20.25■□□□□ 0.83
ECHDC2-223ENST00000542552 AFDNP55196 1824 aaKnown RBP20.25■□□□□ 0.83
ECHDC2-223ENST00000542552 CAMTA2O94983 1202 aa20.24■□□□□ 0.83
ECHDC2-223ENST00000542552 TGFB2P61812 414 aa20.24■□□□□ 0.83
ECHDC2-223ENST00000542552 ZNF330Q9Y3S2 320 aaPredicted RBP20.24■□□□□ 0.83
ECHDC2-223ENST00000542552 PXDNLA1KZ92 1463 aa20.24■□□□□ 0.83
ECHDC2-223ENST00000542552 YBX3P16989 372 aaKnown RBP eCLIP20.23■□□□□ 0.83
ECHDC2-223ENST00000542552 N4BP2Q86UW6 1770 aaPredicted RBP20.22■□□□□ 0.83
ECHDC2-223ENST00000542552 NPM2Q86SE8 214 aaKnown RBP20.22■□□□□ 0.83
ECHDC2-223ENST00000542552 DZIP3Q86Y13 1208 aaKnown RBP20.22■□□□□ 0.83
ECHDC2-223ENST00000542552 RGL2O15211 777 aa20.21■□□□□ 0.83
ECHDC2-223ENST00000542552 ZNF853P0CG23 659 aa20.21■□□□□ 0.83
ECHDC2-223ENST00000542552 CFAP44Q96MT7 982 aa20.21■□□□□ 0.83
ECHDC2-223ENST00000542552 CHD4Q14839 1912 aa20.21■□□□□ 0.83
ECHDC2-223ENST00000542552 TBC1D9BQ66K14 1250 aa20.2■□□□□ 0.82
ECHDC2-223ENST00000542552 ERBB4Q15303 1308 aa20.2■□□□□ 0.82
ECHDC2-223ENST00000542552 BRCA1P38398 1863 aaKnown RBP20.2■□□□□ 0.82
ECHDC2-223ENST00000542552 SERPINB2P05120 415 aa20.19■□□□□ 0.82
ECHDC2-223ENST00000542552 CLEC4GQ6UXB4 293 aa20.19■□□□□ 0.82
ECHDC2-223ENST00000542552 PELP1Q8IZL8 1130 aaKnown RBP20.19■□□□□ 0.82
ECHDC2-223ENST00000542552 A0A0G2JLW4 131 aa20.18■□□□□ 0.82
ECHDC2-223ENST00000542552 GRIN3BO60391 1043 aa20.18■□□□□ 0.82
ECHDC2-223ENST00000542552 KCNA3P22001 575 aa20.18■□□□□ 0.82
ECHDC2-223ENST00000542552 NCBP3Q53F19 620 aaKnown RBP20.18■□□□□ 0.82
ECHDC2-223ENST00000542552 LAS1LQ9Y4W2 734 aaKnown RBP20.18■□□□□ 0.82
ECHDC2-223ENST00000542552 DPEP1P16444 411 aa20.17■□□□□ 0.82
ECHDC2-223ENST00000542552 CALD1Q05682 793 aaKnown RBP20.17■□□□□ 0.82
ECHDC2-223ENST00000542552 PDIA6Q15084 440 aa20.17■□□□□ 0.82
ECHDC2-223ENST00000542552 CCDC27Q2M243 656 aa20.17■□□□□ 0.82
ECHDC2-223ENST00000542552 LRP10Q7Z4F1 713 aa20.17■□□□□ 0.82
ECHDC2-223ENST00000542552 IFT57Q9NWB7 429 aa20.17■□□□□ 0.82
ECHDC2-223ENST00000542552 YY1P25490 414 aa20.16■□□□□ 0.82
ECHDC2-223ENST00000542552 KRT24Q2M2I5 525 aa20.16■□□□□ 0.82
ECHDC2-223ENST00000542552 BICDL1Q6ZP65 573 aa20.16■□□□□ 0.82
ECHDC2-223ENST00000542552 CARMIL3Q8ND23 1372 aa20.16■□□□□ 0.82
ECHDC2-223ENST00000542552 SETDB2Q96T68 719 aa20.15■□□□□ 0.82
ECHDC2-223ENST00000542552 MBIPQ9NS73 344 aa20.15■□□□□ 0.82
ECHDC2-223ENST00000542552 ZNF652Q9Y2D9 606 aa20.15■□□□□ 0.82
ECHDC2-223ENST00000542552 ERVV-1B6SEH8 477 aa20.14■□□□□ 0.81
ECHDC2-223ENST00000542552 HOXB7P09629 217 aa20.14■□□□□ 0.81
ECHDC2-223ENST00000542552 MYL6BP14649 208 aa20.14■□□□□ 0.81
ECHDC2-223ENST00000542552 GNAI1P63096 354 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms