RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 RC3H1Q5TC82 1133 aaKnown RBP22.11■■□□□ 1.13
LIG1-204ENST00000542460 CHMP4AQ9BY43 222 aa22.11■■□□□ 1.13
LIG1-204ENST00000542460 CNTNAP4Q9C0A0 1308 aa22.11■■□□□ 1.13
LIG1-204ENST00000542460 CRKLP46109 303 aaKnown RBP22.11■■□□□ 1.13
LIG1-204ENST00000542460 TJP1Q07157 1748 aa22.1■■□□□ 1.13
LIG1-204ENST00000542460 EIF2S2P20042 333 aaKnown RBP22.1■■□□□ 1.13
LIG1-204ENST00000542460 CCDC87Q9NVE4 849 aa22.1■■□□□ 1.13
LIG1-204ENST00000542460 HDGFL1Q5TGJ6 251 aa22.09■■□□□ 1.13
LIG1-204ENST00000542460 NBPF14Q5TI25 921 aa22.09■■□□□ 1.13
LIG1-204ENST00000542460 AK7Q96M32 723 aa22.09■■□□□ 1.13
LIG1-204ENST00000542460 NUP188Q5SRE5 1749 aa22.09■■□□□ 1.13
LIG1-204ENST00000542460 VAMP4O75379 141 aa22.08■■□□□ 1.13
LIG1-204ENST00000542460 R3HDM1Q15032 1099 aaKnown RBP22.08■■□□□ 1.13
LIG1-204ENST00000542460 INTS5Q6P9B9 1019 aaKnown RBP22.08■■□□□ 1.13
LIG1-204ENST00000542460 AKT1S1Q96B36 256 aa22.08■■□□□ 1.13
LIG1-204ENST00000542460 C5P01031 1676 aa22.08■■□□□ 1.12
LIG1-204ENST00000542460 A1BGP04217 495 aa22.07■■□□□ 1.12
LIG1-204ENST00000542460 STK32BQ9NY57 414 aa22.07■■□□□ 1.12
LIG1-204ENST00000542460 SLC15A2Q16348 729 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 ERBB4Q15303 1308 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 GNPATO15228 680 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 CT47B1P0C2W7 299 aaPredicted RBP22.06■■□□□ 1.12
LIG1-204ENST00000542460 ZNF827Q17R98 1081 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 CCDC30Q5VVM6 783 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 NECTIN2Q92692 538 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 ANO8Q9HCE9 1232 aaPredicted RBP22.06■■□□□ 1.12
LIG1-204ENST00000542460 ZBTB1Q9Y2K1 713 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 C4BP0C0L5 1744 aa22.06■■□□□ 1.12
LIG1-204ENST00000542460 TAF1LQ8IZX4 1826 aa22.05■■□□□ 1.12
LIG1-204ENST00000542460 COL5A3P25940 1745 aaPredicted RBP22.05■■□□□ 1.12
LIG1-204ENST00000542460 LRP5O75197 1615 aa22.05■■□□□ 1.12
LIG1-204ENST00000542460 RPS6KA4O75676 772 aa22.05■■□□□ 1.12
LIG1-204ENST00000542460 CANXP27824 592 aaKnown RBP22.05■■□□□ 1.12
LIG1-204ENST00000542460 TFCP2L1Q9NZI6 479 aa22.05■■□□□ 1.12
LIG1-204ENST00000542460 RTCBQ9Y3I0 505 aaKnown RBP22.05■■□□□ 1.12
LIG1-204ENST00000542460 NBPF26B4DH59 902 aa22.03■■□□□ 1.12
LIG1-204ENST00000542460 IL6STP40189 918 aaPredicted RBP22.03■■□□□ 1.12
LIG1-204ENST00000542460 NBPF10Q6P3W6 841 aaKnown RBP22.03■■□□□ 1.12
LIG1-204ENST00000542460 NBPF15Q8N660 670 aa22.03■■□□□ 1.12
LIG1-204ENST00000542460 ZNF428Q96B54 188 aa22.03■■□□□ 1.12
LIG1-204ENST00000542460 DBF4Q9UBU7 674 aaPredicted RBP22.03■■□□□ 1.12
LIG1-204ENST00000542460 LAMB4A4D0S4 1761 aa22.02■■□□□ 1.12
LIG1-204ENST00000542460 PDIA6Q15084 440 aa22.02■■□□□ 1.12
LIG1-204ENST00000542460 PIP4K2AP48426 406 aaPredicted RBP22.01■■□□□ 1.11
LIG1-204ENST00000542460 STK31Q9BXU1 1019 aa22.01■■□□□ 1.11
LIG1-204ENST00000542460 DDX21Q9NR30 783 aaKnown RBP eCLIP22.01■■□□□ 1.11
LIG1-204ENST00000542460 CHPF2Q9P2E5 772 aa22.01■■□□□ 1.11
LIG1-204ENST00000542460 MYL6BP14649 208 aa22.01■■□□□ 1.11
LIG1-204ENST00000542460 SSFA2P28290 1259 aa22.01■■□□□ 1.11
LIG1-204ENST00000542460 EIF5P55010 431 aaKnown RBP22.01■■□□□ 1.11
LIG1-204ENST00000542460 NPM2Q86SE8 214 aaKnown RBP22.01■■□□□ 1.11
LIG1-204ENST00000542460 FLAD1Q8NFF5 587 aa22.01■■□□□ 1.11
LIG1-204ENST00000542460 ADRA2BP18089 450 aa22■■□□□ 1.11
LIG1-204ENST00000542460 TRAPPC3LQ5T215 181 aa22■■□□□ 1.11
LIG1-204ENST00000542460 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.99■■□□□ 1.11
LIG1-204ENST00000542460 AMIGO3Q86WK7 504 aa21.99■■□□□ 1.11
LIG1-204ENST00000542460 HYPKQ9NX55 129 aa21.99■■□□□ 1.11
LIG1-204ENST00000542460 ZNF330Q9Y3S2 320 aaPredicted RBP21.99■■□□□ 1.11
LIG1-204ENST00000542460 MYH14Q7Z406 1995 aaKnown RBP21.98■■□□□ 1.11
LIG1-204ENST00000542460 PHF14O94880 888 aa21.98■■□□□ 1.11
LIG1-204ENST00000542460 PROSER3Q2NL68 480 aa21.98■■□□□ 1.11
LIG1-204ENST00000542460 A0A087WZG4 1122 aa21.97■■□□□ 1.11
LIG1-204ENST00000542460 TCERG1O14776 1098 aaKnown RBP21.97■■□□□ 1.11
LIG1-204ENST00000542460 ANXA1P04083 346 aa21.97■■□□□ 1.11
LIG1-204ENST00000542460 SLC4A2P04920 1241 aa21.97■■□□□ 1.11
LIG1-204ENST00000542460 LRP10Q7Z4F1 713 aa21.97■■□□□ 1.11
LIG1-204ENST00000542460 PNPLA7Q6ZV29 1317 aa21.97■■□□□ 1.11
LIG1-204ENST00000542460 ALDH1L2Q3SY69 923 aa21.96■■□□□ 1.11
LIG1-204ENST00000542460 SMIM5Q71RC9 77 aa21.96■■□□□ 1.11
LIG1-204ENST00000542460 ARHGEF1Q92888 912 aaKnown RBP21.96■■□□□ 1.11
LIG1-204ENST00000542460 COL15A1P39059 1388 aa21.96■■□□□ 1.11
LIG1-204ENST00000542460 RFC4P35249 363 aa21.95■■□□□ 1.1
LIG1-204ENST00000542460 COL23A1Q86Y22 540 aaPredicted RBP21.95■■□□□ 1.1
LIG1-204ENST00000542460 SSH1Q8WYL5 1049 aa21.94■■□□□ 1.1
LIG1-204ENST00000542460 ARXQ96QS3 562 aa21.94■■□□□ 1.1
LIG1-204ENST00000542460 MSH5O43196 834 aa21.93■■□□□ 1.1
LIG1-204ENST00000542460 RARSP54136 660 aaKnown RBP21.93■■□□□ 1.1
LIG1-204ENST00000542460 COPS6Q7L5N1 327 aa21.93■■□□□ 1.1
LIG1-204ENST00000542460 DZIP3Q86Y13 1208 aaKnown RBP21.93■■□□□ 1.1
LIG1-204ENST00000542460 XAGE3Q8WTP9 111 aa21.93■■□□□ 1.1
LIG1-204ENST00000542460 UBR3Q6ZT12 1888 aa21.93■■□□□ 1.1
LIG1-204ENST00000542460 PHAXQ9H814 394 aaKnown RBP21.92■■□□□ 1.1
LIG1-204ENST00000542460 NARFQ9UHQ1 456 aa21.92■■□□□ 1.1
LIG1-204ENST00000542460 TBC1D2BQ9UPU7 963 aa21.92■■□□□ 1.1
LIG1-204ENST00000542460 ZPR1O75312 459 aa21.91■■□□□ 1.1
LIG1-204ENST00000542460 AIMP1Q12904 312 aaKnown RBP21.91■■□□□ 1.1
LIG1-204ENST00000542460 MRPL50Q8N5N7 158 aaKnown RBP21.91■■□□□ 1.1
LIG1-204ENST00000542460 SMC4Q9NTJ3 1288 aa21.91■■□□□ 1.1
LIG1-204ENST00000542460 KIF6Q6ZMV9 814 aa21.9■■□□□ 1.1
LIG1-204ENST00000542460 TTLL7Q6ZT98 887 aa21.9■■□□□ 1.1
LIG1-204ENST00000542460 BCL2L13Q9BXK5 485 aa21.9■■□□□ 1.1
LIG1-204ENST00000542460 USP42Q9H9J4 1324 aaKnown RBP21.9■■□□□ 1.1
LIG1-204ENST00000542460 G2E3Q7L622 706 aa21.9■■□□□ 1.1
LIG1-204ENST00000542460 BRPF1P55201 1214 aaPredicted RBP21.89■■□□□ 1.09
LIG1-204ENST00000542460 FLIIQ13045 1269 aa21.89■■□□□ 1.09
LIG1-204ENST00000542460 ERVV-1B6SEH8 477 aa21.88■■□□□ 1.09
LIG1-204ENST00000542460 DDX58O95786 925 aaKnown RBP21.88■■□□□ 1.09
LIG1-204ENST00000542460 USPL1Q5W0Q7 1092 aa21.88■■□□□ 1.09
LIG1-204ENST00000542460 ANKRD13DQ6ZTN6 518 aa21.88■■□□□ 1.09
LIG1-204ENST00000542460 SLC16A10Q8TF71 515 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms