RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 CCDC87Q9NVE4 849 aa12.85□□□□□ -0.35
YBX3-212ENST00000542002 ZBTB1Q9Y2K1 713 aa12.85□□□□□ -0.35
YBX3-212ENST00000542002 ZNF831Q5JPB2 1677 aa12.85□□□□□ -0.35
YBX3-212ENST00000542002 APAF1O14727 1248 aa12.84□□□□□ -0.35
YBX3-212ENST00000542002 A1BGP04217 495 aa12.84□□□□□ -0.35
YBX3-212ENST00000542002 SYT17Q9BSW7 474 aa12.84□□□□□ -0.35
YBX3-212ENST00000542002 SRP68Q9UHB9 627 aaKnown RBP12.84□□□□□ -0.35
YBX3-212ENST00000542002 TJP1Q07157 1748 aa12.84□□□□□ -0.35
YBX3-212ENST00000542002 QSER1Q2KHR3 1735 aa12.84□□□□□ -0.35
YBX3-212ENST00000542002 SIPA1L3O60292 1781 aaPredicted RBP12.84□□□□□ -0.35
YBX3-212ENST00000542002 GYS1P13807 737 aa12.83□□□□□ -0.36
YBX3-212ENST00000542002 CANXP27824 592 aaKnown RBP12.83□□□□□ -0.36
YBX3-212ENST00000542002 MRS2Q9HD23 443 aa12.83□□□□□ -0.36
YBX3-212ENST00000542002 MYH14Q7Z406 1995 aaKnown RBP12.83□□□□□ -0.36
YBX3-212ENST00000542002 SOS1Q07889 1333 aaPredicted RBP12.83□□□□□ -0.36
YBX3-212ENST00000542002 UBR3Q6ZT12 1888 aa12.82□□□□□ -0.36
YBX3-212ENST00000542002 COL5A3P25940 1745 aaPredicted RBP12.82□□□□□ -0.36
YBX3-212ENST00000542002 STARD3NLO95772 234 aa12.82□□□□□ -0.36
YBX3-212ENST00000542002 RFC4P35249 363 aa12.82□□□□□ -0.36
YBX3-212ENST00000542002 PIP4K2AP48426 406 aaPredicted RBP12.82□□□□□ -0.36
YBX3-212ENST00000542002 EIF4A1P60842 406 aaKnown RBP12.82□□□□□ -0.36
YBX3-212ENST00000542002 VIRMAQ69YN4 1812 aaKnown RBP12.82□□□□□ -0.36
YBX3-212ENST00000542002 SNRPA1P09661 255 aaKnown RBP12.81□□□□□ -0.36
YBX3-212ENST00000542002 POLD1P28340 1107 aa12.81□□□□□ -0.36
YBX3-212ENST00000542002 EIF5P55010 431 aaKnown RBP12.81□□□□□ -0.36
YBX3-212ENST00000542002 FKBP8Q14318 412 aa12.81□□□□□ -0.36
YBX3-212ENST00000542002 TEX13AQ9BXU3 409 aaPredicted RBP12.81□□□□□ -0.36
YBX3-212ENST00000542002 BCL2L12Q9HB09 334 aa12.81□□□□□ -0.36
YBX3-212ENST00000542002 UBR2Q8IWV8 1755 aa12.81□□□□□ -0.36
YBX3-212ENST00000542002 NBPF26B4DH59 902 aa12.8□□□□□ -0.36
YBX3-212ENST00000542002 CHL1O00533 1208 aa12.8□□□□□ -0.36
YBX3-212ENST00000542002 GIGYF1O75420 1035 aaPredicted RBP12.8□□□□□ -0.36
YBX3-212ENST00000542002 NBPF10Q6P3W6 841 aaKnown RBP12.8□□□□□ -0.36
YBX3-212ENST00000542002 NBPF15Q8N660 670 aa12.8□□□□□ -0.36
YBX3-212ENST00000542002 USP42Q9H9J4 1324 aaKnown RBP12.8□□□□□ -0.36
YBX3-212ENST00000542002 CICQ96RK0 1608 aaPredicted RBP12.8□□□□□ -0.36
YBX3-212ENST00000542002 DLG5Q8TDM6 1919 aa12.8□□□□□ -0.36
YBX3-212ENST00000542002 COL24A1Q17RW2 1714 aa12.79□□□□□ -0.36
YBX3-212ENST00000542002 MMP10P09238 476 aa12.79□□□□□ -0.36
YBX3-212ENST00000542002 USPL1Q5W0Q7 1092 aa12.79□□□□□ -0.36
YBX3-212ENST00000542002 NLGN1Q8N2Q7 840 aa12.79□□□□□ -0.36
YBX3-212ENST00000542002 NLGN2Q8NFZ4 835 aa12.79□□□□□ -0.36
YBX3-212ENST00000542002 TSPYL4Q9UJ04 414 aa12.79□□□□□ -0.36
YBX3-212ENST00000542002 UTRNP46939 3433 aa12.78□□□□□ -0.36
YBX3-212ENST00000542002 TM4SF1P30408 202 aa12.78□□□□□ -0.36
YBX3-212ENST00000542002 LMOD3Q0VAK6 560 aa12.78□□□□□ -0.36
YBX3-212ENST00000542002 KRT24Q2M2I5 525 aa12.78□□□□□ -0.36
YBX3-212ENST00000542002 NARFQ9UHQ1 456 aa12.78□□□□□ -0.36
YBX3-212ENST00000542002 TBC1D2BQ9UPU7 963 aa12.78□□□□□ -0.36
YBX3-212ENST00000542002 IL6STP40189 918 aaPredicted RBP12.77□□□□□ -0.37
YBX3-212ENST00000542002 DDR1Q08345 913 aa12.77□□□□□ -0.37
YBX3-212ENST00000542002 KLHL34Q8N239 644 aa12.77□□□□□ -0.37
YBX3-212ENST00000542002 BABAM1Q9NWV8 329 aa12.77□□□□□ -0.37
YBX3-212ENST00000542002 LAS1LQ9Y4W2 734 aaKnown RBP12.77□□□□□ -0.37
YBX3-212ENST00000542002 COL15A1P39059 1388 aa12.77□□□□□ -0.37
YBX3-212ENST00000542002 ZPR1O75312 459 aa12.76□□□□□ -0.37
YBX3-212ENST00000542002 ZNF853P0CG23 659 aa12.76□□□□□ -0.37
YBX3-212ENST00000542002 ZNF330Q9Y3S2 320 aaPredicted RBP12.76□□□□□ -0.37
YBX3-212ENST00000542002 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
YBX3-212ENST00000542002 GOLGB1Q14789 3259 aaKnown RBP12.75□□□□□ -0.37
YBX3-212ENST00000542002 POLRMTO00411 1230 aaKnown RBP12.74□□□□□ -0.37
YBX3-212ENST00000542002 CAMTA2O94983 1202 aa12.74□□□□□ -0.37
YBX3-212ENST00000542002 NFIXQ14938 502 aa12.74□□□□□ -0.37
YBX3-212ENST00000542002 PDIA6Q15084 440 aa12.74□□□□□ -0.37
YBX3-212ENST00000542002 CFAP44Q96MT7 982 aa12.74□□□□□ -0.37
YBX3-212ENST00000542002 MBIPQ9NS73 344 aa12.74□□□□□ -0.37
YBX3-212ENST00000542002 CD2APQ9Y5K6 639 aa12.74□□□□□ -0.37
YBX3-212ENST00000542002 A0A087WZG4 1122 aa12.73□□□□□ -0.37
YBX3-212ENST00000542002 TBC1D9BQ66K14 1250 aa12.73□□□□□ -0.37
YBX3-212ENST00000542002 LRP10Q7Z4F1 713 aa12.73□□□□□ -0.37
YBX3-212ENST00000542002 WWC1Q8IX03 1113 aa12.73□□□□□ -0.37
YBX3-212ENST00000542002 SALL2Q9Y467 1007 aaPredicted RBP12.73□□□□□ -0.37
YBX3-212ENST00000542002 KDM3BQ7LBC6 1761 aa12.72□□□□□ -0.37
YBX3-212ENST00000542002 C4AP0C0L4 1744 aa12.72□□□□□ -0.37
YBX3-212ENST00000542002 EIF2S2P20042 333 aaKnown RBP12.72□□□□□ -0.37
YBX3-212ENST00000542002 CCDC27Q2M243 656 aa12.72□□□□□ -0.37
YBX3-212ENST00000542002 PROSER3Q2NL68 480 aa12.72□□□□□ -0.37
YBX3-212ENST00000542002 DZIP3Q86Y13 1208 aaKnown RBP12.72□□□□□ -0.37
YBX3-212ENST00000542002 NGEFQ8N5V2 710 aa12.72□□□□□ -0.37
YBX3-212ENST00000542002 PARP3Q9Y6F1 533 aa12.72□□□□□ -0.37
YBX3-212ENST00000542002 ANXA1P04083 346 aa12.71□□□□□ -0.37
YBX3-212ENST00000542002 MYL6BP14649 208 aa12.71□□□□□ -0.37
YBX3-212ENST00000542002 YBX3P16989 372 aaKnown RBP eCLIP12.71□□□□□ -0.377e-7■■□□□ 13.8
YBX3-212ENST00000542002 HLFQ16534 295 aa12.71□□□□□ -0.37
YBX3-212ENST00000542002 BICDL1Q6ZP65 573 aa12.71□□□□□ -0.37
YBX3-212ENST00000542002 TTLL7Q6ZT98 887 aa12.71□□□□□ -0.37
YBX3-212ENST00000542002 NECTIN2Q92692 538 aa12.71□□□□□ -0.37
YBX3-212ENST00000542002 IFT57Q9NWB7 429 aa12.71□□□□□ -0.37
YBX3-212ENST00000542002 A0A0G2JLW4 131 aa12.7□□□□□ -0.38
YBX3-212ENST00000542002 C8orf58Q8NAV2 365 aa12.7□□□□□ -0.38
YBX3-212ENST00000542002 WWC3Q9ULE0 1092 aa12.7□□□□□ -0.38
YBX3-212ENST00000542002 ELL2O00472 640 aaPredicted RBP12.69□□□□□ -0.38
YBX3-212ENST00000542002 SERPINB2P05120 415 aa12.69□□□□□ -0.38
YBX3-212ENST00000542002 KCNA3P22001 575 aa12.69□□□□□ -0.38
YBX3-212ENST00000542002 GNAI1P63096 354 aa12.69□□□□□ -0.38
YBX3-212ENST00000542002 NCBP3Q53F19 620 aaKnown RBP12.69□□□□□ -0.38
YBX3-212ENST00000542002 DUSP27Q5VZP5 1158 aa12.69□□□□□ -0.38
YBX3-212ENST00000542002 MIER1Q8N108 512 aa12.69□□□□□ -0.38
YBX3-212ENST00000542002 TSR2Q969E8 191 aaKnown RBP12.69□□□□□ -0.38
YBX3-212ENST00000542002 SPINK5Q9NQ38 1064 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms