RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-205	ENST00000535375	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.23	□□□□□ -0.77
PRKDC-205	ENST00000535375	MSX1	P28360	303 aa		10.22	□□□□□ -0.77
PRKDC-205	ENST00000535375	CUEDC1	Q9NWM3	386 aa	Predicted RBP	10.22	□□□□□ -0.77
PRKDC-205	ENST00000535375	ZNF232	Q9UNY5	417 aa		10.22	□□□□□ -0.77
PRKDC-205	ENST00000535375	USP3	Q9Y6I4	520 aa		10.22	□□□□□ -0.77
PRKDC-205	ENST00000535375	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	FAM181B	A6NEQ2	426 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	DKK1	O94907	266 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	TAT	P17735	454 aa	Predicted RBP	10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	EPHA4	P54764	986 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	FOXK2	Q01167	660 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	TBCEL	Q5QJ74	424 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	ZSCAN1	Q8NBB4	408 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	TIMELESS	Q9UNS1	1208 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	PARP3	Q9Y6F1	533 aa		10.21	□□□□□ -0.77
PRKDC-205	ENST00000535375	DBN1	Q16643	649 aa		10.2	□□□□□ -0.78
PRKDC-205	ENST00000535375	C1orf216	Q8TAB5	229 aa		10.2	□□□□□ -0.78
PRKDC-205	ENST00000535375	NUCKS1	Q9H1E3	243 aa	Known RBP	10.2	□□□□□ -0.78
PRKDC-205	ENST00000535375	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	10.2	□□□□□ -0.78
PRKDC-205	ENST00000535375	NOVA2	Q9UNW9	492 aa	Known RBP	10.2	□□□□□ -0.78
PRKDC-205	ENST00000535375	NOS2	P35228	1153 aa		10.19	□□□□□ -0.78
PRKDC-205	ENST00000535375	TEAD4	Q15561	434 aa		10.19	□□□□□ -0.78
PRKDC-205	ENST00000535375	L3MBTL2	Q969R5	705 aa		10.19	□□□□□ -0.78
PRKDC-205	ENST00000535375	PBXIP1	Q96AQ6	731 aa		10.19	□□□□□ -0.78
PRKDC-205	ENST00000535375	ZNF837	Q96EG3	531 aa	Predicted RBP	10.19	□□□□□ -0.78
PRKDC-205	ENST00000535375	RUBCNL	Q9H714	662 aa		10.19	□□□□□ -0.78
PRKDC-205	ENST00000535375	SERTM1	A2A2V5	107 aa		10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	SUPT5H	O00267	1087 aa	Known RBP	10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	PPP1R12B	O60237	982 aa	Predicted RBP	10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	ARSJ	Q5FYB0	599 aa	Predicted RBP	10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	EFHC2	Q5JST6	749 aa		10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	GPR161	Q8N6U8	529 aa	Known RBP	10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	TRERF1	Q96PN7	1200 aa		10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	C1orf115	Q9H7X2	142 aa		10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	ZDHHC3	Q9NYG2	299 aa		10.18	□□□□□ -0.78
PRKDC-205	ENST00000535375	PSMA6	P60900	246 aa	Known RBP	10.17	□□□□□ -0.78
PRKDC-205	ENST00000535375	SCG3	Q8WXD2	468 aa	Known RBP	10.17	□□□□□ -0.78
PRKDC-205	ENST00000535375	GTPBP3	Q969Y2	492 aa	Known RBP	10.17	□□□□□ -0.78
PRKDC-205	ENST00000535375	ATAD2	Q6PL18	1390 aa		10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	LBR	Q14739	615 aa	Known RBP	10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	BICDL1	Q6ZP65	573 aa		10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	ZNF295-AS1	Q8N0V1	137 aa		10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	GAS2L2	Q8NHY3	880 aa		10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	ARX	Q96QS3	562 aa		10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.16	□□□□□ -0.78
PRKDC-205	ENST00000535375	SRPK2	P78362	688 aa	Known RBP	10.15	□□□□□ -0.78
PRKDC-205	ENST00000535375	ELOA	Q14241	798 aa	Known RBP	10.15	□□□□□ -0.78
PRKDC-205	ENST00000535375	ZDHHC1	Q8WTX9	485 aa		10.15	□□□□□ -0.78
PRKDC-205	ENST00000535375	CRISPLD1	Q9H336	500 aa		10.15	□□□□□ -0.78
PRKDC-205	ENST00000535375	GJA3	Q9Y6H8	435 aa		10.15	□□□□□ -0.78
PRKDC-205	ENST00000535375	GPR25	O00155	361 aa		10.14	□□□□□ -0.79
PRKDC-205	ENST00000535375	LGR5	O75473	907 aa		10.14	□□□□□ -0.79
PRKDC-205	ENST00000535375	ATG7	O95352	703 aa		10.14	□□□□□ -0.79
PRKDC-205	ENST00000535375	LOR	P23490	312 aa	Predicted RBP	10.14	□□□□□ -0.79
PRKDC-205	ENST00000535375	CNTNAP3B	Q96NU0	1288 aa		10.14	□□□□□ -0.79
PRKDC-205	ENST00000535375	CNTNAP3	Q9BZ76	1288 aa		10.14	□□□□□ -0.79
PRKDC-205	ENST00000535375	NEUROD4	Q9HD90	331 aa		10.14	□□□□□ -0.79
PRKDC-205	ENST00000535375	ATP4A	P20648	1035 aa		10.13	□□□□□ -0.79
PRKDC-205	ENST00000535375	TXLNA	P40222	546 aa		10.13	□□□□□ -0.79
PRKDC-205	ENST00000535375	PHF24	Q9UPV7	400 aa		10.13	□□□□□ -0.79
PRKDC-205	ENST00000535375		A0A1W2PNR3	127 aa		10.12	□□□□□ -0.79
PRKDC-205	ENST00000535375	EML1	O00423	815 aa		10.12	□□□□□ -0.79
PRKDC-205	ENST00000535375	FIGNL1	Q6PIW4	674 aa		10.12	□□□□□ -0.79
PRKDC-205	ENST00000535375	HCN4	Q9Y3Q4	1203 aa		10.12	□□□□□ -0.79
PRKDC-205	ENST00000535375	ACIN1	Q9UKV3	1341 aa	Known RBP	10.11	□□□□□ -0.79
PRKDC-205	ENST00000535375	C21orf2	O43822	256 aa		10.11	□□□□□ -0.79
PRKDC-205	ENST00000535375	PPP1R15A	O75807	674 aa	Predicted RBP	10.11	□□□□□ -0.79
PRKDC-205	ENST00000535375	NLRP8	Q86W28	1048 aa		10.11	□□□□□ -0.79
PRKDC-205	ENST00000535375	ARID3A	Q99856	593 aa		10.11	□□□□□ -0.79
PRKDC-205	ENST00000535375	IGFBP4	P22692	258 aa		10.1	□□□□□ -0.79
PRKDC-205	ENST00000535375	SH3PXD2A	Q5TCZ1	1133 aa		10.1	□□□□□ -0.79
PRKDC-205	ENST00000535375	STAG2	Q8N3U4	1231 aa		10.1	□□□□□ -0.79
PRKDC-205	ENST00000535375	RHPN1	Q8TCX5	695 aa		10.1	□□□□□ -0.79
PRKDC-205	ENST00000535375	VTI1A	Q96AJ9	217 aa		10.1	□□□□□ -0.79
PRKDC-205	ENST00000535375	ZIC5	Q96T25	663 aa		10.1	□□□□□ -0.79
PRKDC-205	ENST00000535375	ZMIZ1	Q9ULJ6	1067 aa		10.1	□□□□□ -0.79
PRKDC-205	ENST00000535375	HIRA	P54198	1017 aa	Predicted RBP	10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	KRT76	Q01546	638 aa		10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	SWI5	Q1ZZU3	235 aa		10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	RNFT1	Q5M7Z0	435 aa		10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	C1orf53	Q5VUE5	145 aa		10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	NGLY1	Q96IV0	654 aa		10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	C2orf49	Q9BVC5	232 aa	Predicted RBP	10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	CFHR5	Q9BXR6	569 aa		10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	PHACTR1	Q9C0D0	580 aa		10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.09	□□□□□ -0.79
PRKDC-205	ENST00000535375	STK32A	Q8WU08	396 aa		10.08	□□□□□ -0.8
PRKDC-205	ENST00000535375	ZCCHC2	Q9C0B9	1178 aa	Known RBP	10.08	□□□□□ -0.8
PRKDC-205	ENST00000535375	PCDHGC4	Q9Y5F7	938 aa		10.08	□□□□□ -0.8
PRKDC-205	ENST00000535375	GPC6	Q9Y625	555 aa	Predicted RBP	10.08	□□□□□ -0.8
PRKDC-205	ENST00000535375	ATXN7	O15265	892 aa	Predicted RBP	10.07	□□□□□ -0.8
PRKDC-205	ENST00000535375	MX2	P20592	715 aa		10.07	□□□□□ -0.8
PRKDC-205	ENST00000535375	WEE1	P30291	646 aa		10.07	□□□□□ -0.8
PRKDC-205	ENST00000535375	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.07	□□□□□ -0.8
PRKDC-205	ENST00000535375	MBIP	Q9NS73	344 aa		10.07	□□□□□ -0.8
PRKDC-205	ENST00000535375	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	10.07	□□□□□ -0.8
PRKDC-205	ENST00000535375	THBS1	P07996	1170 aa		10.06	□□□□□ -0.8
PRKDC-205	ENST00000535375	GAS6	Q14393	721 aa		10.06	□□□□□ -0.8
PRKDC-205	ENST00000535375	LRRC69	Q6ZNQ3	347 aa		10.06	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms