RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 PXDNLA1KZ92 1463 aa12.89□□□□□ -0.35
SSBP3-215ENST00000533946 AFDNP55196 1824 aaKnown RBP12.88□□□□□ -0.35
SSBP3-215ENST00000533946 SENP3-EIF4A1A0A087X0R7 540 aa12.88□□□□□ -0.35
SSBP3-215ENST00000533946 KCNA3P22001 575 aa12.88□□□□□ -0.35
SSBP3-215ENST00000533946 TEFQ10587 303 aa12.88□□□□□ -0.35
SSBP3-215ENST00000533946 CCDC184Q52MB2 194 aa12.88□□□□□ -0.35
SSBP3-215ENST00000533946 CCDC24Q8N4L8 307 aa12.88□□□□□ -0.35
SSBP3-215ENST00000533946 ZNF784Q8NCA9 323 aaPredicted RBP12.88□□□□□ -0.35
SSBP3-215ENST00000533946 NUDCQ9Y266 331 aa12.88□□□□□ -0.35
SSBP3-215ENST00000533946 HEG1Q9ULI3 1381 aa12.88□□□□□ -0.35
SSBP3-215ENST00000533946 BTBD11A6QL63 1104 aa12.87□□□□□ -0.35
SSBP3-215ENST00000533946 DPEP1P16444 411 aa12.87□□□□□ -0.35
SSBP3-215ENST00000533946 TM4SF1P30408 202 aa12.87□□□□□ -0.35
SSBP3-215ENST00000533946 CCDC146Q8IYE0 955 aa12.87□□□□□ -0.35
SSBP3-215ENST00000533946 RRP7AQ9Y3A4 280 aaKnown RBP12.87□□□□□ -0.35
SSBP3-215ENST00000533946 COL15A1P39059 1388 aa12.86□□□□□ -0.35
SSBP3-215ENST00000533946 CHRNA5P30532 468 aa12.86□□□□□ -0.35
SSBP3-215ENST00000533946 NFIXQ14938 502 aa12.86□□□□□ -0.35
SSBP3-215ENST00000533946 TBC1D2BQ9UPU7 963 aa12.86□□□□□ -0.35
SSBP3-215ENST00000533946 C10orf71Q711Q0 1435 aa12.86□□□□□ -0.35
SSBP3-215ENST00000533946 CARMIL3Q8ND23 1372 aa12.85□□□□□ -0.35
SSBP3-215ENST00000533946 NBPF26B4DH59 902 aa12.85□□□□□ -0.35
SSBP3-215ENST00000533946 POLRMTO00411 1230 aaKnown RBP12.85□□□□□ -0.35
SSBP3-215ENST00000533946 ADRA2BP18089 450 aa12.85□□□□□ -0.35
SSBP3-215ENST00000533946 EIF5P55010 431 aaKnown RBP12.85□□□□□ -0.35
SSBP3-215ENST00000533946 NBPF10Q6P3W6 841 aaKnown RBP12.85□□□□□ -0.35
SSBP3-215ENST00000533946 NLGN1Q8N2Q7 840 aa12.85□□□□□ -0.35
SSBP3-215ENST00000533946 NBPF15Q8N660 670 aa12.85□□□□□ -0.35
SSBP3-215ENST00000533946 BRCA1P38398 1863 aaKnown RBP12.85□□□□□ -0.35
SSBP3-215ENST00000533946 DCAF8L1A6NGE4 600 aa12.84□□□□□ -0.35
SSBP3-215ENST00000533946 BICDL1Q6ZP65 573 aa12.84□□□□□ -0.35
SSBP3-215ENST00000533946 TTC5Q8N0Z6 440 aa12.84□□□□□ -0.35
SSBP3-215ENST00000533946 VSIG10Q8N0Z9 540 aa12.84□□□□□ -0.35
SSBP3-215ENST00000533946 NARFQ9UHQ1 456 aa12.84□□□□□ -0.35
SSBP3-215ENST00000533946 ZNF330Q9Y3S2 320 aaPredicted RBP12.84□□□□□ -0.35
SSBP3-215ENST00000533946 NFE2L2Q16236 605 aa12.83□□□□□ -0.36
SSBP3-215ENST00000533946 TBC1D9BQ66K14 1250 aa12.83□□□□□ -0.36
SSBP3-215ENST00000533946 KDM3BQ7LBC6 1761 aa12.83□□□□□ -0.36
SSBP3-215ENST00000533946 CEP350Q5VT06 3117 aa12.82□□□□□ -0.36
SSBP3-215ENST00000533946 RALBP1Q15311 655 aa12.82□□□□□ -0.36
SSBP3-215ENST00000533946 FMNL2Q96PY5 1086 aa12.82□□□□□ -0.36
SSBP3-215ENST00000533946 PARP3Q9Y6F1 533 aa12.82□□□□□ -0.36
SSBP3-215ENST00000533946 ANKRD31Q8N7Z5 1873 aa12.81□□□□□ -0.36
SSBP3-215ENST00000533946 ZPR1O75312 459 aa12.81□□□□□ -0.36
SSBP3-215ENST00000533946 TAF7Q15545 349 aaPredicted RBP12.81□□□□□ -0.36
SSBP3-215ENST00000533946 NEUROD2Q15784 382 aa12.81□□□□□ -0.36
SSBP3-215ENST00000533946 KRT24Q2M2I5 525 aa12.81□□□□□ -0.36
SSBP3-215ENST00000533946 PRKRIP1Q9H875 184 aaPredicted RBP12.81□□□□□ -0.36
SSBP3-215ENST00000533946 ADAMTS8Q9UP79 889 aa12.81□□□□□ -0.36
SSBP3-215ENST00000533946 NRXN2Q9P2S2 1712 aa12.81□□□□□ -0.36
SSBP3-215ENST00000533946 CAMTA2O94983 1202 aa12.8□□□□□ -0.36
SSBP3-215ENST00000533946 STARD3NLO95772 234 aa12.8□□□□□ -0.36
SSBP3-215ENST00000533946 RTF1Q92541 710 aaKnown RBP12.8□□□□□ -0.36
SSBP3-215ENST00000533946 BCS1LQ9Y276 419 aa12.8□□□□□ -0.36
SSBP3-215ENST00000533946 MYBBP1AQ9BQG0 1328 aaKnown RBP12.8□□□□□ -0.36
SSBP3-215ENST00000533946 SCN7AQ01118 1682 aa12.8□□□□□ -0.36
SSBP3-215ENST00000533946 SERPINB2P05120 415 aa12.79□□□□□ -0.36
SSBP3-215ENST00000533946 TMPOP42166 694 aaKnown RBP12.79□□□□□ -0.36
SSBP3-215ENST00000533946 PRELPP51888 382 aa12.79□□□□□ -0.36
SSBP3-215ENST00000533946 RIPK4P57078 832 aa12.79□□□□□ -0.36
SSBP3-215ENST00000533946 EIF4A1P60842 406 aaKnown RBP12.79□□□□□ -0.36
SSBP3-215ENST00000533946 SLC51AQ86UW1 340 aa12.79□□□□□ -0.36
SSBP3-215ENST00000533946 ZNF526Q8TF50 670 aaPredicted RBP12.79□□□□□ -0.36
SSBP3-215ENST00000533946 TRIM35Q9UPQ4 493 aa12.79□□□□□ -0.36
SSBP3-215ENST00000533946 ANXA1P04083 346 aa12.78□□□□□ -0.36
SSBP3-215ENST00000533946 HLFQ16534 295 aa12.78□□□□□ -0.36
SSBP3-215ENST00000533946 NGEFQ8N5V2 710 aa12.78□□□□□ -0.36
SSBP3-215ENST00000533946 BCORQ6W2J9 1755 aa12.78□□□□□ -0.36
SSBP3-215ENST00000533946 COL11A2P13942 1736 aaPredicted RBP12.77□□□□□ -0.36
SSBP3-215ENST00000533946 HTATSF1O43719 755 aaKnown RBP12.77□□□□□ -0.37
SSBP3-215ENST00000533946 SNRPA1P09661 255 aaKnown RBP12.77□□□□□ -0.37
SSBP3-215ENST00000533946 IL6STP40189 918 aaPredicted RBP12.77□□□□□ -0.37
SSBP3-215ENST00000533946 PROSER3Q2NL68 480 aa12.77□□□□□ -0.37
SSBP3-215ENST00000533946 TTLL7Q6ZT98 887 aa12.77□□□□□ -0.37
SSBP3-215ENST00000533946 ZNF428Q96B54 188 aa12.77□□□□□ -0.37
SSBP3-215ENST00000533946 ATP10DQ9P241 1426 aa12.77□□□□□ -0.37
SSBP3-215ENST00000533946 GRIN3BO60391 1043 aa12.76□□□□□ -0.37
SSBP3-215ENST00000533946 GIGYF1O75420 1035 aaPredicted RBP12.76□□□□□ -0.37
SSBP3-215ENST00000533946 HMGB2P26583 209 aaKnown RBP12.76□□□□□ -0.37
SSBP3-215ENST00000533946 TGFB2P61812 414 aa12.76□□□□□ -0.37
SSBP3-215ENST00000533946 DZIP3Q86Y13 1208 aaKnown RBP12.76□□□□□ -0.37
SSBP3-215ENST00000533946 NECTIN2Q92692 538 aa12.76□□□□□ -0.37
SSBP3-215ENST00000533946 LAMB4A4D0S4 1761 aa12.75□□□□□ -0.37
SSBP3-215ENST00000533946 FAM177BA6PVY3 158 aa12.75□□□□□ -0.37
SSBP3-215ENST00000533946 ADCY9O60503 1353 aa12.75□□□□□ -0.37
SSBP3-215ENST00000533946 PRR5LQ6MZQ0 368 aa12.75□□□□□ -0.37
SSBP3-215ENST00000533946 ARHGAP27Q6ZUM4 889 aa12.75□□□□□ -0.37
SSBP3-215ENST00000533946 MAPK8IP3Q9UPT6 1336 aa12.75□□□□□ -0.37
SSBP3-215ENST00000533946 ARFGEF1Q9Y6D6 1849 aa12.74□□□□□ -0.37
SSBP3-215ENST00000533946 TEX13AQ9BXU3 409 aaPredicted RBP12.74□□□□□ -0.37
SSBP3-215ENST00000533946 MYL6BP14649 208 aa12.73□□□□□ -0.37
SSBP3-215ENST00000533946 RASSF7Q02833 373 aa12.73□□□□□ -0.37
SSBP3-215ENST00000533946 PDIA6Q15084 440 aa12.73□□□□□ -0.37
SSBP3-215ENST00000533946 LRP10Q7Z4F1 713 aa12.73□□□□□ -0.37
SSBP3-215ENST00000533946 ZNF219Q9P2Y4 722 aaPredicted RBP12.73□□□□□ -0.37
SSBP3-215ENST00000533946 SBF1O95248 1867 aa12.73□□□□□ -0.37
SSBP3-215ENST00000533946 CACNA1SQ13698 1873 aa12.73□□□□□ -0.37
SSBP3-215ENST00000533946 DLEC1Q9Y238 1755 aa12.73□□□□□ -0.37
SSBP3-215ENST00000533946 OLFM4Q6UX06 510 aa12.72□□□□□ -0.37
SSBP3-215ENST00000533946 C2CD5Q86YS7 1000 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms